You are here

Home

CBS51388_008088-T1, CBS51388_008088-T1 (mRNA) Aspergillus niger CBS 513.88

Overview
NameCBS51388_008088-T1
Unique NameCBS51388_008088-T1
TypemRNA
OrganismAspergillus niger CBS 513.88
Sequences
The following sequences are available for this feature:

mRNA from alignment at An12:2143929..2145096-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>CBS51388_008088-T1 ID=CBS51388_008088-T1|Name=CBS51388_008088-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=1168bp|location=Sequence derived from alignment at An12:2143929..2145096- (Aspergillus niger CBS 513.88)
ATGGAATCTTCCACTGCGGATAAGAAGCGCAACAAGCTTGGATATCATCG
CACCTCTGTCGCATGTGGTAAGCTCTCGGTTCTCGGTGGTCTCCGTTGGA
ATACTCATTTCTTATGCGACAGTACACTGTCGGCGGCGAAAGATCCGATG
TCTTGTTGCGCCAGACGATGCTCAAGGACGATGCGAGAATTGTATCCGCC
TCCGAAAGGAATGCCAGTTCTTCCCTGTCGACCAGCAGCCCCCGATTGAG
AAGAAGTCACGTCCCAGTTCTCGTCTAGAAACCGCTTCGACGGACCCGTC
GACCGCTTCTTCGTCGCCACCGAATGTGACTGGGGTAGAGCAAGCGGAGC
CTTTCTTTACTTACCAACCCATGCCGTTGGGTTCGAATCCGGATGTGGGA
GCCTTCAATACTGCGACCTTTCCGAGTAACCCGATGGCACCATTTACTCC
AGGTTTGTGGCTCTAACGAGCAGGAGGAATGTTGAATCATGAAGTGTGTT
GACCATTGCCTGAAACAGATCGCAGCGTCGGTGCGGACTTTGTAGCGCCT
CCTTCTATGGACCCCGGGGTTCCGTGGGACGAGTATACGACCATCACAGA
CCCTCAAATGTTAGCAGCTATGCCCGCGGGGAAAGCAATGATGAATATGT
CTTCGAACGTTTGGGGTGCGACACCCAATCCCATGGCACCGATGCCAACC
ACTTCGCCCCTGCCAGGAACGCCCACAGTCCCGTCGCAGTCGCAAGGTCT
GGCACAAACACCCACGTATGCCATGCAGCCTGATGGGACGGTCTGGCAAG
TGCCCCCCCAACGCGCGATGACATTTTCGGCACAACCCGCAGACATGGCA
ATCCCGTATCCGAACCAAGGTCAATTCGTGCAGCCATCGCCTACAGATCT
TAAAAGAAGAATGACCAGCCCGGCCCAGTCTTTCCCCGGAACTCCGATCA
ACCCCCAGAGTCCTCCTGCAGCGGATCTACAGGCGGTGTCTGTCTCATAC
CCAGGCCAGCCGGCCGCTATGGGTTTCAACACCTGGCAGGATGTGAACAG
CATGTCCCCCATGAGTGTGGTCCAGTACCCGATGTACACGAACGACCCAG
CCCAGCAAGCAGGCTTTGGCAGCCCGCCACCGATGGGCCACCCCGGTCCA
GGCCAATCCCCGCAATAA
back to top

Coding sequence (CDS) from alignment at An12:2143929..2145096-

>CBS51388_008088-T1 ID=CBS51388_008088-T1|Name=CBS51388_008088-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=3141bp|location=Sequence derived from alignment at An12:2143929..2145096- (Aspergillus niger CBS 513.88)
ATCGCAGCGTCGGTGCGGACTTTGTAGCGCCTCCTTCTATGGACCCCGGG
GTTCCGTGGGACGAGTATACGACCATCACAGACCCTCAAATGTTAGCAGC
TATGCCCGCGGGGAAAGCAATGATGAATATGTCTTCGAACGTTTGGGGTG
CGACACCCAATCCCATGGCACCGATGCCAACCACTTCGCCCCTGCCAGGA
ACGCCCACAGTCCCGTCGCAGTCGCAAGGTCTGGCACAAACACCCACGTA
TGCCATGCAGCCTGATGGGACGGTCTGGCAAGTGCCCCCCCAACGCGCGA
TGACATTTTCGGCACAACCCGCAGACATGGCAATCCCGTATCCGAACCAA
GGTCAATTCGTGCAGCCATCGCCTACAGATCTTAAAAGAAGAATGACCAG
CCCGGCCCAGTCTTTCCCCGGAACTCCGATCAACCCCCAGAGTCCTCCTG
CAGCGGATCTACAGGCGGTGTCTGTCTCATACCCAGGCCAGCCGGCCGCT
ATGGGTTTCAACACCTGGCAGGATGTGAACAGCATGTCCCCCATGAGTGT
GGTCCAGTACCCGATGTACACGAACGACCCAGCCCAGCAAGCAGGCTTTG
GCAGCCCGCCACCGATGGGCCACCCCGGTCCAGGCCAATCCCCGCAATAA
TACACTGTCGGCGGCGAAAGATCCGATGTCTTGTTGCGCCAGACGATGCT
CAAGGACGATGCGAGAATTGTATCCGCCTCCGAAAGGAATGCCAGTTCTT
CCCTGTCGACCAGCAGCCCCCGATTGAGAAGAAGTCACGTCCCAGTTCTC
GTCTAGAAACCGCTTCGACGGACCCGTCGACCGCTTCTTCGTCGCCACCG
AATGTGACTGGGGTAGAGCAAGCGGAGCCTTTCTTTACTTACCAACCCAT
GCCGTTGGGTTCGAATCCGGATGTGGGAGCCTTCAATACTGCGACCTTTC
CGAGTAACCCGATGGCACCATTTACTCCAGATGGAATCTTCCACTGCGGA
TAAGAAGCGCAACAAGCTTGGATATCATCGCACCTCTGTCGCATGTGATC
GCAGCGTCGGTGCGGACTTTGTAGCGCCTCCTTCTATGGACCCCGGGGTT
CCGTGGGACGAGTATACGACCATCACAGACCCTCAAATGTTAGCAGCTAT
GCCCGCGGGGAAAGCAATGATGAATATGTCTTCGAACGTTTGGGGTGCGA
CACCCAATCCCATGGCACCGATGCCAACCACTTCGCCCCTGCCAGGAACG
CCCACAGTCCCGTCGCAGTCGCAAGGTCTGGCACAAACACCCACGTATGC
CATGCAGCCTGATGGGACGGTCTGGCAAGTGCCCCCCCAACGCGCGATGA
CATTTTCGGCACAACCCGCAGACATGGCAATCCCGTATCCGAACCAAGGT
CAATTCGTGCAGCCATCGCCTACAGATCTTAAAAGAAGAATGACCAGCCC
GGCCCAGTCTTTCCCCGGAACTCCGATCAACCCCCAGAGTCCTCCTGCAG
CGGATCTACAGGCGGTGTCTGTCTCATACCCAGGCCAGCCGGCCGCTATG
GGTTTCAACACCTGGCAGGATGTGAACAGCATGTCCCCCATGAGTGTGGT
CCAGTACCCGATGTACACGAACGACCCAGCCCAGCAAGCAGGCTTTGGCA
GCCCGCCACCGATGGGCCACCCCGGTCCAGGCCAATCCCCGCAATAATAC
ACTGTCGGCGGCGAAAGATCCGATGTCTTGTTGCGCCAGACGATGCTCAA
GGACGATGCGAGAATTGTATCCGCCTCCGAAAGGAATGCCAGTTCTTCCC
TGTCGACCAGCAGCCCCCGATTGAGAAGAAGTCACGTCCCAGTTCTCGTC
TAGAAACCGCTTCGACGGACCCGTCGACCGCTTCTTCGTCGCCACCGAAT
GTGACTGGGGTAGAGCAAGCGGAGCCTTTCTTTACTTACCAACCCATGCC
GTTGGGTTCGAATCCGGATGTGGGAGCCTTCAATACTGCGACCTTTCCGA
GTAACCCGATGGCACCATTTACTCCAGATGGAATCTTCCACTGCGGATAA
GAAGCGCAACAAGCTTGGATATCATCGCACCTCTGTCGCATGTGATCGCA
GCGTCGGTGCGGACTTTGTAGCGCCTCCTTCTATGGACCCCGGGGTTCCG
TGGGACGAGTATACGACCATCACAGACCCTCAAATGTTAGCAGCTATGCC
CGCGGGGAAAGCAATGATGAATATGTCTTCGAACGTTTGGGGTGCGACAC
CCAATCCCATGGCACCGATGCCAACCACTTCGCCCCTGCCAGGAACGCCC
ACAGTCCCGTCGCAGTCGCAAGGTCTGGCACAAACACCCACGTATGCCAT
GCAGCCTGATGGGACGGTCTGGCAAGTGCCCCCCCAACGCGCGATGACAT
TTTCGGCACAACCCGCAGACATGGCAATCCCGTATCCGAACCAAGGTCAA
TTCGTGCAGCCATCGCCTACAGATCTTAAAAGAAGAATGACCAGCCCGGC
CCAGTCTTTCCCCGGAACTCCGATCAACCCCCAGAGTCCTCCTGCAGCGG
ATCTACAGGCGGTGTCTGTCTCATACCCAGGCCAGCCGGCCGCTATGGGT
TTCAACACCTGGCAGGATGTGAACAGCATGTCCCCCATGAGTGTGGTCCA
GTACCCGATGTACACGAACGACCCAGCCCAGCAAGCAGGCTTTGGCAGCC
CGCCACCGATGGGCCACCCCGGTCCAGGCCAATCCCCGCAATAATACACT
GTCGGCGGCGAAAGATCCGATGTCTTGTTGCGCCAGACGATGCTCAAGGA
CGATGCGAGAATTGTATCCGCCTCCGAAAGGAATGCCAGTTCTTCCCTGT
CGACCAGCAGCCCCCGATTGAGAAGAAGTCACGTCCCAGTTCTCGTCTAG
AAACCGCTTCGACGGACCCGTCGACCGCTTCTTCGTCGCCACCGAATGTG
ACTGGGGTAGAGCAAGCGGAGCCTTTCTTTACTTACCAACCCATGCCGTT
GGGTTCGAATCCGGATGTGGGAGCCTTCAATACTGCGACCTTTCCGAGTA
ACCCGATGGCACCATTTACTCCAGATGGAATCTTCCACTGCGGATAAGAA
GCGCAACAAGCTTGGATATCATCGCACCTCTGTCGCATGTG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0042025host cell nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0000981DNA-binding transcription factor activity, RNA polymerase II-specific
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CBS51388_008088CBS51388_008088Aspergillus niger CBS 513.88gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_008088-T1CBS51388_008088-T1-proteinAspergillus niger CBS 513.88polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_008088-T1.cdsCBS51388_008088-T1.cdsAspergillus niger CBS 513.88CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_008088-T1.exon3CBS51388_008088-T1.exon3Aspergillus niger CBS 513.88exon
CBS51388_008088-T1.exon2CBS51388_008088-T1.exon2Aspergillus niger CBS 513.88exon
CBS51388_008088-T1.exon1CBS51388_008088-T1.exon1Aspergillus niger CBS 513.88exon


Properties
Property NameValue
DBxrefInterPro:IPR036864
DBxrefInterPro:IPR001138
DBxrefPFAM:PF00172
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger CBS 513.88 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
An12supercontigAn12:2143929..2145096 -
Powered by Drupal