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Sequences
The following sequences are available for this feature:
mRNA from alignment at An15:266769..268931+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >CBS51388_009247-T1 ID=CBS51388_009247-T1|Name=CBS51388_009247-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=2163bp|location=Sequence derived from alignment at An15:266769..268931+ (Aspergillus niger CBS 513.88)
ATGGCTTTTCGGGCTCGCTCCGTCGCCCTTCTTCGTTGGGGGTTGGAGCC
GAGATCATCCCAGCTGAGTGTGCTGGGTAGGAGACGTGGGTTGGCGACAG
TGTCAGATGGGACGCGGTATGTTTTTCCATCCTGTACGTGGTTTTCTTTG
GTGGTTAGGTGCTAATTCTGGTTTGTTCACAGGGCATATGATGTGGTGGT
CATTGGAGGAGGCCATGCTGGCTCCGAAGCCTGTGCCGCGGCTGCTCGTT
CAGGCGCCCGAACCGCATTAATCACGCCCTCGCTATCCAACATCGGTGTC
TGTTCGTGTAATCCGAGTTTCGGTGGAATCGGAAAGGGTACCATGATACG
AGAAGTTGATGCGATGGACGGAGTCGCGGGACGAATTATTGATAAGGCCG
GTATTATGTTTCGCACGCTGAACCGATCCAAGGGCCCAGCTGTTTGGGGT
CCCCGTGCTCAGATTGATCGCGATCTGTATAAGAAGTATATGCAGGAGGA
GTTGCAGGGGACGGAAGGATTGAGCATCGTCGAGGGTAAGGTTGCGGATA
TCGTGGTGTCGAAGGATGGGGTCGAGCATACTCCCGGGGCGCAGGGCAAG
ATTGTTGGTGTTAGGCTGGAGTCTGGCGAGGTTATACCCACTGGCAAGGT
GGTTATCACAACGGGCACGTTCTTGGGTGGGGAGATTCATATTGGGCTTG
AAGCATACCCGTCTGGTCGGATGGGTGAAGCTGCTACCTTCGGACTCAGT
AAGTCCTTGCGGGATGCCGGGTTCACGTTGGGTCGTTTGAAGACGGGCAC
ACCTCCGCGGTTGGATAGAAAGACGATCAATTTTGCGCCTCTGGAAGTTC
AGGAGGGTGATCACCCCCCGAGTCCGTTCTCCTATCTCAATGGCAGGGTT
CAGGTCGACGATGAGGCCCAGCTTACTTGCTGGATGACCTACACTAATGA
CGATGTTCACGATATTGTCCGAGCGAACCTGGACAAGACCATTCACATCC
GCGAGACCGTTAGGGGCCCCAGATACTGTCCTTCGCTCGAGTCTAAGATC
ATCCGCTTCACCGATAAGAAGCGCCATCTGATCTGGCTCGAGCCAGAGGG
TTTCGCGCCAAACGACGTCATCTACCCTAACGGTATCTCCATGACCATTC
CCGCCGATGCCCAGTACGCCATGCTGCGAAAGGTCCACGGTCTCGAGAAC
GTGACCATGCTTCAACCCGGCTACGGAGTCGAGTACGACTACATCGACCC
GCGCAATCTCCGACCCACGCTCGAAACCAAACTCATCAGCGGTCTCTACC
TTGCCGGTCAGATCAACGGTACCACCGGCTACGAAGAAGCCGCTGGACAA
GGTATCATCGCTGGTACCAACGCTGGATTATCCGCCCAAGGTCGGGAACC
GCTCACTCTCCGCCGGTCCGACGCATTCATCGGCATCATGATCGACGACC
TCACCACAAAGGGCGTCTCCGAGCCCTACCGCATGTTCACAACGCGAAGC
GAATACCGCATTACCACTCGCTCCGACAACGCCGATCTCCGTCTCACCCG
GATGGCCCGCGAAGCCGGAATCGTCTCCGACAAGCGCTGGCGACACTTCA
CGGAAACGGAAGCGCAAATCAACGAGCTTCAAACCCTCCTCGAGAACACC
AAAATGTCCTCCTACGCCTGGGCTCGCAAAGGCTTCAAGGCCCGCATCGA
CCCCTCTCAACGCTCCGCTCTCGACCTCCTCTGTCTCCGCGAGAGCGATA
TTGACTCCCTCATCCCACATATTGAGTCCCCCACCGGCACCGTCTACTCT
GCCTCTTCCTTCCCTCCGGAGATCCGTAACCGTGTCTCCATTGAAGGCCG
CTACGCTCCCTTTGTGATCCGCCAGGAAAACGCAGCCAAGAAATCCCTCC
GCGACGAAAATTTGTCTATCCCTGCTGACTTGGACTATGCTACTGTTCAG
GGCATCAGCATCGAGGAAAAGCAGGCCCTGGAGCGCGTCCGTCCCGTCAG
TATCGGCATGGCGAGGCGCATCGAGGGCGTTACTCCGTCCGGTGTCCTGA
GGGTGCTCATGCATGTGCATAGGACCAGTAGGGATAGGACTGCTGCTTCT
GCTCCTCCTGCTTCGGAGGGGCTTGAGGAGACCCCTGATGATGTTATCAG
CCAGGCACCTTGA back to topCoding sequence (CDS) from alignment at An15:266769..268931+ >CBS51388_009247-T1 ID=CBS51388_009247-T1|Name=CBS51388_009247-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=4194bp|location=Sequence derived from alignment at An15:266769..268931+ (Aspergillus niger CBS 513.88)
ATGGCTTTTCGGGCTCGCTCCGTCGCCCTTCTTCGTTGGGGGTTGGAGCC
GAGATCATCCCAGCTGAGTGTGCTGGGTAGGAGACGTGGGTTGGCGACAG
TGTCAGATGGGACGCGGGCATATGATGTGGTGGTCATTGGAGGAGGCCAT
GCTGGCTCCGAAGCCTGTGCCGCGGCTGCTCGTTCAGGCGCCCGAACCGC
ATTAATCACGCCCTCGCTATCCAACATCGGTGTCTGTTCGTGTAATCCGA
GTTTCGGTGGAATCGGAAAGGGTACCATGATACGAGAAGTTGATGCGATG
GACGGAGTCGCGGGACGAATTATTGATAAGGCCGGTATTATGTTTCGCAC
GCTGAACCGATCCAAGGGCCCAGCTGTTTGGGGTCCCCGTGCTCAGATTG
ATCGCGATCTGTATAAGAAGTATATGCAGGAGGAGTTGCAGGGGACGGAA
GGATTGAGCATCGTCGAGGGTAAGGTTGCGGATATCGTGGTGTCGAAGGA
TGGGGTCGAGCATACTCCCGGGGCGCAGGGCAAGATTGTTGGTGTTAGGC
TGGAGTCTGGCGAGGTTATACCCACTGGCAAGGTGGTTATCACAACGGGC
ACGTTCTTGGGTGGGGAGATTCATATTGGGCTTGAAGCATACCCGTCTGG
TCGGATGGGTGAAGCTGCTACCTTCGGACTCAGTAAGTCCTTGCGGGATG
CCGGGTTCACGTTGGGTCGTTTGAAGACGGGCACACCTCCGCGGTTGGAT
AGAAAGACGATCAATTTTGCGCCTCTGGAAGTTCAGGAGGGTGATCACCC
CCCGAGTCCGTTCTCCTATCTCAATGGCAGGGTTCAGGTCGACGATGAGG
CCCAGCTTACTTGCTGGATGACCTACACTAATGACGATGTTCACGATATT
GTCCGAGCGAACCTGGACAAGACCATTCACATCCGCGAGACCGTTAGGGG
CCCCAGATACTGTCCTTCGCTCGAGTCTAAGATCATCCGCTTCACCGATA
AGAAGCGCCATCTGATCTGGCTCGAGCCAGAGGGTTTCGCGCCAAACGAC
GTCATCTACCCTAACGGTATCTCCATGACCATTCCCGCCGATGCCCAGTA
CGCCATGCTGCGAAAGGTCCACGGTCTCGAGAACGTGACCATGCTTCAAC
CCGGCTACGGAGTCGAGTACGACTACATCGACCCGCGCAATCTCCGACCC
ACGCTCGAAACCAAACTCATCAGCGGTCTCTACCTTGCCGGTCAGATCAA
CGGTACCACCGGCTACGAAGAAGCCGCTGGACAAGGTATCATCGCTGGTA
CCAACGCTGGATTATCCGCCCAAGGTCGGGAACCGCTCACTCTCCGCCGG
TCCGACGCATTCATCGGCATCATGATCGACGACCTCACCACAAAGGGCGT
CTCCGAGCCCTACCGCATGTTCACAACGCGAAGCGAATACCGCATTACCA
CTCGCTCCGACAACGCCGATCTCCGTCTCACCCGGATGGCCCGCGAAGCC
GGAATCGTCTCCGACAAGCGCTGGCGACACTTCACGGAAACGGAAGCGCA
AATCAACGAGCTTCAAACCCTCCTCGAGAACACCAAAATGTCCTCCTACG
CCTGGGCTCGCAAAGGCTTCAAGGCCCGCATCGACCCCTCTCAACGCTCC
GCTCTCGACCTCCTCTGTCTCCGCGAGAGCGATATTGACTCCCTCATCCC
ACATATTGAGTCCCCCACCGGCACCGTCTACTCTGCCTCTTCCTTCCCTC
CGGAGATCCGTAACCGTGTCTCCATTGAAGGCCGCTACGCTCCCTTTGTG
ATCCGCCAGGAAAACGCAGCCAAGAAATCCCTCCGCGACGAAAATTTGTC
TATCCCTGCTGACTTGGACTATGCTACTGTTCAGGGCATCAGCATCGAGG
AAAAGCAGGCCCTGGAGCGCGTCCGTCCCGTCAGTATCGGCATGGCGAGG
CGCATCGAGGGCGTTACTCCGTCCGGTGTCCTGAGGGTGCTCATGCATGT
GCATAGGACCAGTAGGGATAGGACTGCTGCTTCTGCTCCTCCTGCTTCGG
AGGGGCTTGAGGAGACCCCTGATGATGTTATCAGCCAGGCACCTTGAATG
GCTTTTCGGGCTCGCTCCGTCGCCCTTCTTCGTTGGGGGTTGGAGCCGAG
ATCATCCCAGCTGAGTGTGCTGGGTAGGAGACGTGGGTTGGCGACAGTGT
CAGATGGGACGCGGGCATATGATGTGGTGGTCATTGGAGGAGGCCATGCT
GGCTCCGAAGCCTGTGCCGCGGCTGCTCGTTCAGGCGCCCGAACCGCATT
AATCACGCCCTCGCTATCCAACATCGGTGTCTGTTCGTGTAATCCGAGTT
TCGGTGGAATCGGAAAGGGTACCATGATACGAGAAGTTGATGCGATGGAC
GGAGTCGCGGGACGAATTATTGATAAGGCCGGTATTATGTTTCGCACGCT
GAACCGATCCAAGGGCCCAGCTGTTTGGGGTCCCCGTGCTCAGATTGATC
GCGATCTGTATAAGAAGTATATGCAGGAGGAGTTGCAGGGGACGGAAGGA
TTGAGCATCGTCGAGGGTAAGGTTGCGGATATCGTGGTGTCGAAGGATGG
GGTCGAGCATACTCCCGGGGCGCAGGGCAAGATTGTTGGTGTTAGGCTGG
AGTCTGGCGAGGTTATACCCACTGGCAAGGTGGTTATCACAACGGGCACG
TTCTTGGGTGGGGAGATTCATATTGGGCTTGAAGCATACCCGTCTGGTCG
GATGGGTGAAGCTGCTACCTTCGGACTCAGTAAGTCCTTGCGGGATGCCG
GGTTCACGTTGGGTCGTTTGAAGACGGGCACACCTCCGCGGTTGGATAGA
AAGACGATCAATTTTGCGCCTCTGGAAGTTCAGGAGGGTGATCACCCCCC
GAGTCCGTTCTCCTATCTCAATGGCAGGGTTCAGGTCGACGATGAGGCCC
AGCTTACTTGCTGGATGACCTACACTAATGACGATGTTCACGATATTGTC
CGAGCGAACCTGGACAAGACCATTCACATCCGCGAGACCGTTAGGGGCCC
CAGATACTGTCCTTCGCTCGAGTCTAAGATCATCCGCTTCACCGATAAGA
AGCGCCATCTGATCTGGCTCGAGCCAGAGGGTTTCGCGCCAAACGACGTC
ATCTACCCTAACGGTATCTCCATGACCATTCCCGCCGATGCCCAGTACGC
CATGCTGCGAAAGGTCCACGGTCTCGAGAACGTGACCATGCTTCAACCCG
GCTACGGAGTCGAGTACGACTACATCGACCCGCGCAATCTCCGACCCACG
CTCGAAACCAAACTCATCAGCGGTCTCTACCTTGCCGGTCAGATCAACGG
TACCACCGGCTACGAAGAAGCCGCTGGACAAGGTATCATCGCTGGTACCA
ACGCTGGATTATCCGCCCAAGGTCGGGAACCGCTCACTCTCCGCCGGTCC
GACGCATTCATCGGCATCATGATCGACGACCTCACCACAAAGGGCGTCTC
CGAGCCCTACCGCATGTTCACAACGCGAAGCGAATACCGCATTACCACTC
GCTCCGACAACGCCGATCTCCGTCTCACCCGGATGGCCCGCGAAGCCGGA
ATCGTCTCCGACAAGCGCTGGCGACACTTCACGGAAACGGAAGCGCAAAT
CAACGAGCTTCAAACCCTCCTCGAGAACACCAAAATGTCCTCCTACGCCT
GGGCTCGCAAAGGCTTCAAGGCCCGCATCGACCCCTCTCAACGCTCCGCT
CTCGACCTCCTCTGTCTCCGCGAGAGCGATATTGACTCCCTCATCCCACA
TATTGAGTCCCCCACCGGCACCGTCTACTCTGCCTCTTCCTTCCCTCCGG
AGATCCGTAACCGTGTCTCCATTGAAGGCCGCTACGCTCCCTTTGTGATC
CGCCAGGAAAACGCAGCCAAGAAATCCCTCCGCGACGAAAATTTGTCTAT
CCCTGCTGACTTGGACTATGCTACTGTTCAGGGCATCAGCATCGAGGAAA
AGCAGGCCCTGGAGCGCGTCCGTCCCGTCAGTATCGGCATGGCGAGGCGC
ATCGAGGGCGTTACTCCGTCCGGTGTCCTGAGGGTGCTCATGCATGTGCA
TAGGACCAGTAGGGATAGGACTGCTGCTTCTGCTCCTCCTGCTTCGGAGG
GGCTTGAGGAGACCCCTGATGATGTTATCAGCCAGGCACCTTGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0002098 | tRNA wobble uridine modification |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR020595 |
| DBxref | InterPro:IPR026904 |
| DBxref | InterPro:IPR004416 |
| DBxref | InterPro:IPR036188 |
| DBxref | PFAM:PF13932 |
| DBxref | PFAM:PF01134 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| An15 | supercontig | An15:266769..268931 + |
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