You are here

Home

CBS51388_010152-T1, CBS51388_010152-T1 (mRNA) Aspergillus niger CBS 513.88

Overview
NameCBS51388_010152-T1
Unique NameCBS51388_010152-T1
TypemRNA
OrganismAspergillus niger CBS 513.88
Sequences
The following sequences are available for this feature:

mRNA from alignment at An16:1041882..1042715+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>CBS51388_010152-T1 ID=CBS51388_010152-T1|Name=CBS51388_010152-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=834bp|location=Sequence derived from alignment at An16:1041882..1042715+ (Aspergillus niger CBS 513.88)
ATGACTCTCGCCGAGGAGCTCCGCTCGAGAAACTTCAGTACGGACTTGCC
TTGTTTACCTGATTTATTCTTTGACATGCGAAGCAAGGGATAACTAACAA
CTCATCACTTAGGTATCTACGGACAATGGTTTGTACCGCTCTTCTCTGTT
CCATTTCTCGCCCGCTGCTGCCCAACTGTGCGCCTTTGCAACATTTGCGA
AAACAAATCATGGTTGCCTGGATCTTCAGCGCTTGGCGCTGTCATGAAAG
GACCTCCATCAGTTGCCGCCTTGGGCAACCGTGTACTCTGAATGATTGCG
CATAAATTTTGGGGGACTGCGACAACAATGGAGCAATAATTATGGCGTCT
ACCGGACTAGTTTGCTAATCGATATCTGACGTAGGACGGGCGTGATCTGC
ATCGTCTTGTGCTTGGCTCTCGGTATCGCCAACATCTTCTCGTTCGACGT
CGTGATCATCATCTTTAGTGTTCTGTGCCTGTGAGTACTCACCTGCATTT
CTTACACTGGTCTCAGACGCTTACAATACACAGCATCTCTGGTTTGATCC
TCATCTTCGCCGAAGTGCCCTTCCTCCTCAGAATATGCCCCACATCACCG
AAGTTCGATGCATTTATCCGACGCTTCACCACAAACTGGATGCGCGCTGC
AATGTATACAGTTATGAGTGTTGTGCAATGGCTTAGTCTTATCAAGTCCG
CTACCAGTTTGATTGCGGCTGCCGTCTTCCTACTCATTGCCGGTTTATTC
TATGCGCTGGCGGGTCTCAAGAGCCAGGAATTCGTCGACAGCAAGACTTT
GGGCGGCCAAGGTCTTGCGCAGATGATCGTTTAA
back to top

Coding sequence (CDS) from alignment at An16:1041882..1042715+

>CBS51388_010152-T1 ID=CBS51388_010152-T1|Name=CBS51388_010152-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=1800bp|location=Sequence derived from alignment at An16:1041882..1042715+ (Aspergillus niger CBS 513.88)
ATGACTCTCGCCGAGGAGCTCCGCTCGAGAAACTTCAGTATCTACGGACA
ATGGACGGGCGTGATCTGCATCGTCTTGTGCTTGGCTCTCGGTATCGCCA
ACATCTTCTCGTTCGACGTCGTGATCATCATCTTTAGTGTTCTGTGCCTC
ATCTCTGGTTTGATCCTCATCTTCGCCGAAGTGCCCTTCCTCCTCAGAAT
ATGCCCCACATCACCGAAGTTCGATGCATTTATCCGACGCTTCACCACAA
ACTGGATGCGCGCTGCAATGTATACAGTTATGAGTGTTGTGCAATGGCTT
AGTCTTATCAAGTCCGCTACCAGTTTGATTGCGGCTGCCGTCTTCCTACT
CATTGCCGGTTTATTCTATGCGCTGGCGGGTCTCAAGAGCCAGGAATTCG
TCGACAGCAAGACTTTGGGCGGCCAAGGTCTTGCGCAGATGATCGTTTAA
ATGACTCTCGCCGAGGAGCTCCGCTCGAGAAACTTCAGTATCTACGGACA
ATGGACGGGCGTGATCTGCATCGTCTTGTGCTTGGCTCTCGGTATCGCCA
ACATCTTCTCGTTCGACGTCGTGATCATCATCTTTAGTGTTCTGTGCCTC
ATCTCTGGTTTGATCCTCATCTTCGCCGAAGTGCCCTTCCTCCTCAGAAT
ATGCCCCACATCACCGAAGTTCGATGCATTTATCCGACGCTTCACCACAA
ACTGGATGCGCGCTGCAATGTATACAGTTATGAGTGTTGTGCAATGGCTT
AGTCTTATCAAGTCCGCTACCAGTTTGATTGCGGCTGCCGTCTTCCTACT
CATTGCCGGTTTATTCTATGCGCTGGCGGGTCTCAAGAGCCAGGAATTCG
TCGACAGCAAGACTTTGGGCGGCCAAGGTCTTGCGCAGATGATCGTTTAA
ATGACTCTCGCCGAGGAGCTCCGCTCGAGAAACTTCAGTATCTACGGACA
ATGGACGGGCGTGATCTGCATCGTCTTGTGCTTGGCTCTCGGTATCGCCA
ACATCTTCTCGTTCGACGTCGTGATCATCATCTTTAGTGTTCTGTGCCTC
ATCTCTGGTTTGATCCTCATCTTCGCCGAAGTGCCCTTCCTCCTCAGAAT
ATGCCCCACATCACCGAAGTTCGATGCATTTATCCGACGCTTCACCACAA
ACTGGATGCGCGCTGCAATGTATACAGTTATGAGTGTTGTGCAATGGCTT
AGTCTTATCAAGTCCGCTACCAGTTTGATTGCGGCTGCCGTCTTCCTACT
CATTGCCGGTTTATTCTATGCGCTGGCGGGTCTCAAGAGCCAGGAATTCG
TCGACAGCAAGACTTTGGGCGGCCAAGGTCTTGCGCAGATGATCGTTTAA
ATGACTCTCGCCGAGGAGCTCCGCTCGAGAAACTTCAGTATCTACGGACA
ATGGACGGGCGTGATCTGCATCGTCTTGTGCTTGGCTCTCGGTATCGCCA
ACATCTTCTCGTTCGACGTCGTGATCATCATCTTTAGTGTTCTGTGCCTC
ATCTCTGGTTTGATCCTCATCTTCGCCGAAGTGCCCTTCCTCCTCAGAAT
ATGCCCCACATCACCGAAGTTCGATGCATTTATCCGACGCTTCACCACAA
ACTGGATGCGCGCTGCAATGTATACAGTTATGAGTGTTGTGCAATGGCTT
AGTCTTATCAAGTCCGCTACCAGTTTGATTGCGGCTGCCGTCTTCCTACT
CATTGCCGGTTTATTCTATGCGCTGGCGGGTCTCAAGAGCCAGGAATTCG
TCGACAGCAAGACTTTGGGCGGCCAAGGTCTTGCGCAGATGATCGTTTAA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
TVP18CBS51388_010152Aspergillus niger CBS 513.88gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_010152-T1.exon1CBS51388_010152-T1.exon1Aspergillus niger CBS 513.88exon
CBS51388_010152-T1.exon2CBS51388_010152-T1.exon2Aspergillus niger CBS 513.88exon
CBS51388_010152-T1.exon3CBS51388_010152-T1.exon3Aspergillus niger CBS 513.88exon
CBS51388_010152-T1.exon4CBS51388_010152-T1.exon4Aspergillus niger CBS 513.88exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_010152-T1.cdsCBS51388_010152-T1.cdsAspergillus niger CBS 513.88CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_010152-T1CBS51388_010152-T1-proteinAspergillus niger CBS 513.88polypeptide


Properties
Property NameValue
DBxrefInterPro:IPR019365
DBxrefPFAM:PF10233
ProductGolgi apparatus membrane protein tvp18
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger CBS 513.88 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
An16supercontigAn16:1041882..1042715 +
Powered by Drupal