You are here

Home

CBS51388_010208-T1, CBS51388_010208-T1 (mRNA) Aspergillus niger CBS 513.88

Overview
NameCBS51388_010208-T1
Unique NameCBS51388_010208-T1
TypemRNA
OrganismAspergillus niger CBS 513.88
Sequences
The following sequences are available for this feature:

mRNA from alignment at An16:1210645..1211637+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>CBS51388_010208-T1 ID=CBS51388_010208-T1|Name=CBS51388_010208-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=993bp|location=Sequence derived from alignment at An16:1210645..1211637+ (Aspergillus niger CBS 513.88)
ATGCTTCCATCAGCAGCGCCCTACCTACTACGACCTACTAGTAACCGTGC
CGCTTTGCGCCGGCTACAACTACAGCACATCGGTCTTCTTCCCCGCAGCA
CAACAACAATCACAGGAACAACAGCATCATCATCACTAGTACGAAAATAT
GCCACAACGCAAGGCGCCGCCCCGAAACGGCGAAACGTGACTGTTCTATC
GGACGATGGACGATACGAGTGGGGAGAATTGAGCGGGAGGGAGAAAGTTG
CGAGGGCGACGCAGCAGTCGGTGAATTTCGTGGTGATTATTGCGGGGGCG
GTTTTGACGGTTCGTTCAAGCTATATATAATCCGGACCGTTGGGGTGTGA
TTGCTGATGTGTGTTATTGAGTAGGGCGGGGTCTTCTACCTTCTCTTCAC
GGAGGTCTTTTCCCCGAATAGCAAGACATGGCAGTTTGAAAAAGCTGTCG
AGCGCATCAAGGATGATGTTCGGTGTACGAACCTCCTGGGTGATCGGAGG
GAGATCAAGGCTTATGGGGAGAATACGTGGAGTAGATGGGCGAGGAATAG
GCCTATTGCGTACGTTAATTTTCTTTGCCATTGTCTACTGGTGTGAGGGA
ACGGGGTGATGCTGACTGGGATATAGGACGTCTGTCTATCAGGACAGAGT
GGGTCGGGAACACCTGAAGATGAACTTCCACGTATGCGATGCTCTCTTCT
TCCTCTGGGTTGTGTGTGGTATACTGATTGGTTGGTGATATAGGTCGAAG
GTCCTCTTAATTCCGGAACCGTGTTTGTGCACATGATGAAGCCGTTGAAT
GAGCATCACTGGGAGTATCAGCTTCTTGCTTTGGAAGTGCCGGGTTAGTT
TGATCCATATAGCACCCTTTGCTTCAGTTATCCTTGGGGTTGGACTGACT
TGTGTAGGACATTCCCGGGTTGTGCTTGAAGAAGCGCGCGAGAAGCCTGG
CGTTGGGCAAGCACTGAAGATCTTTGGCATTAAGTGGCGGTAG
back to top

Coding sequence (CDS) from alignment at An16:1210645..1211637+

>CBS51388_010208-T1 ID=CBS51388_010208-T1|Name=CBS51388_010208-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=3675bp|location=Sequence derived from alignment at An16:1210645..1211637+ (Aspergillus niger CBS 513.88)
ATGCTTCCATCAGCAGCGCCCTACCTACTACGACCTACTAGTAACCGTGC
CGCTTTGCGCCGGCTACAACTACAGCACATCGGTCTTCTTCCCCGCAGCA
CAACAACAATCACAGGAACAACAGCATCATCATCACTAGTACGAAAATAT
GCCACAACGCAAGGCGCCGCCCCGAAACGGCGAAACGTGACTGTTCTATC
GGACGATGGACGATACGAGTGGGGAGAATTGAGCGGGAGGGAGAAAGTTG
CGAGGGCGACGCAGCAGTCGGTGAATTTCGTGGTGATTATTGCGGGGGCG
GTTTTGACGGGCGGGGTCTTCTACCTTCTCTTCACGGAGGTCTTTTCCCC
GAATAGCAAGACATGGCAGTTTGAAAAAGCTGTCGAGCGCATCAAGGATG
ATGTTCGGTGTACGAACCTCCTGGGTGATCGGAGGGAGATCAAGGCTTAT
GGGGAGAATACGTGGAGTAGATGGGCGAGGAATAGGCCTATTGCGACGTC
TGTCTATCAGGACAGAGTGGGTCGGGAACACCTGAAGATGAACTTCCACG
TCGAAGGTCCTCTTAATTCCGGAACCGTGTTTGTGCACATGATGAAGCCG
TTGAATGAGCATCACTGGGAGTATCAGCTTCTTGCTTTGGAAGTGCCGGG
ACATTCCCGGGTTGTGCTTGAAGAAGCGCGCGAGAAGCCTGGCGTTGGGC
AAGCACTGAAGATCTTTGGCATTAAGTGGCGGTAGATGCTTCCATCAGCA
GCGCCCTACCTACTACGACCTACTAGTAACCGTGCCGCTTTGCGCCGGCT
ACAACTACAGCACATCGGTCTTCTTCCCCGCAGCACAACAACAATCACAG
GAACAACAGCATCATCATCACTAGTACGAAAATATGCCACAACGCAAGGC
GCCGCCCCGAAACGGCGAAACGTGACTGTTCTATCGGACGATGGACGATA
CGAGTGGGGAGAATTGAGCGGGAGGGAGAAAGTTGCGAGGGCGACGCAGC
AGTCGGTGAATTTCGTGGTGATTATTGCGGGGGCGGTTTTGACGGGCGGG
GTCTTCTACCTTCTCTTCACGGAGGTCTTTTCCCCGAATAGCAAGACATG
GCAGTTTGAAAAAGCTGTCGAGCGCATCAAGGATGATGTTCGGTGTACGA
ACCTCCTGGGTGATCGGAGGGAGATCAAGGCTTATGGGGAGAATACGTGG
AGTAGATGGGCGAGGAATAGGCCTATTGCGACGTCTGTCTATCAGGACAG
AGTGGGTCGGGAACACCTGAAGATGAACTTCCACGTCGAAGGTCCTCTTA
ATTCCGGAACCGTGTTTGTGCACATGATGAAGCCGTTGAATGAGCATCAC
TGGGAGTATCAGCTTCTTGCTTTGGAAGTGCCGGGACATTCCCGGGTTGT
GCTTGAAGAAGCGCGCGAGAAGCCTGGCGTTGGGCAAGCACTGAAGATCT
TTGGCATTAAGTGGCGGTAGATGCTTCCATCAGCAGCGCCCTACCTACTA
CGACCTACTAGTAACCGTGCCGCTTTGCGCCGGCTACAACTACAGCACAT
CGGTCTTCTTCCCCGCAGCACAACAACAATCACAGGAACAACAGCATCAT
CATCACTAGTACGAAAATATGCCACAACGCAAGGCGCCGCCCCGAAACGG
CGAAACGTGACTGTTCTATCGGACGATGGACGATACGAGTGGGGAGAATT
GAGCGGGAGGGAGAAAGTTGCGAGGGCGACGCAGCAGTCGGTGAATTTCG
TGGTGATTATTGCGGGGGCGGTTTTGACGGGCGGGGTCTTCTACCTTCTC
TTCACGGAGGTCTTTTCCCCGAATAGCAAGACATGGCAGTTTGAAAAAGC
TGTCGAGCGCATCAAGGATGATGTTCGGTGTACGAACCTCCTGGGTGATC
GGAGGGAGATCAAGGCTTATGGGGAGAATACGTGGAGTAGATGGGCGAGG
AATAGGCCTATTGCGACGTCTGTCTATCAGGACAGAGTGGGTCGGGAACA
CCTGAAGATGAACTTCCACGTCGAAGGTCCTCTTAATTCCGGAACCGTGT
TTGTGCACATGATGAAGCCGTTGAATGAGCATCACTGGGAGTATCAGCTT
CTTGCTTTGGAAGTGCCGGGACATTCCCGGGTTGTGCTTGAAGAAGCGCG
CGAGAAGCCTGGCGTTGGGCAAGCACTGAAGATCTTTGGCATTAAGTGGC
GGTAGATGCTTCCATCAGCAGCGCCCTACCTACTACGACCTACTAGTAAC
CGTGCCGCTTTGCGCCGGCTACAACTACAGCACATCGGTCTTCTTCCCCG
CAGCACAACAACAATCACAGGAACAACAGCATCATCATCACTAGTACGAA
AATATGCCACAACGCAAGGCGCCGCCCCGAAACGGCGAAACGTGACTGTT
CTATCGGACGATGGACGATACGAGTGGGGAGAATTGAGCGGGAGGGAGAA
AGTTGCGAGGGCGACGCAGCAGTCGGTGAATTTCGTGGTGATTATTGCGG
GGGCGGTTTTGACGGGCGGGGTCTTCTACCTTCTCTTCACGGAGGTCTTT
TCCCCGAATAGCAAGACATGGCAGTTTGAAAAAGCTGTCGAGCGCATCAA
GGATGATGTTCGGTGTACGAACCTCCTGGGTGATCGGAGGGAGATCAAGG
CTTATGGGGAGAATACGTGGAGTAGATGGGCGAGGAATAGGCCTATTGCG
ACGTCTGTCTATCAGGACAGAGTGGGTCGGGAACACCTGAAGATGAACTT
CCACGTCGAAGGTCCTCTTAATTCCGGAACCGTGTTTGTGCACATGATGA
AGCCGTTGAATGAGCATCACTGGGAGTATCAGCTTCTTGCTTTGGAAGTG
CCGGGACATTCCCGGGTTGTGCTTGAAGAAGCGCGCGAGAAGCCTGGCGT
TGGGCAAGCACTGAAGATCTTTGGCATTAAGTGGCGGTAGATGCTTCCAT
CAGCAGCGCCCTACCTACTACGACCTACTAGTAACCGTGCCGCTTTGCGC
CGGCTACAACTACAGCACATCGGTCTTCTTCCCCGCAGCACAACAACAAT
CACAGGAACAACAGCATCATCATCACTAGTACGAAAATATGCCACAACGC
AAGGCGCCGCCCCGAAACGGCGAAACGTGACTGTTCTATCGGACGATGGA
CGATACGAGTGGGGAGAATTGAGCGGGAGGGAGAAAGTTGCGAGGGCGAC
GCAGCAGTCGGTGAATTTCGTGGTGATTATTGCGGGGGCGGTTTTGACGG
GCGGGGTCTTCTACCTTCTCTTCACGGAGGTCTTTTCCCCGAATAGCAAG
ACATGGCAGTTTGAAAAAGCTGTCGAGCGCATCAAGGATGATGTTCGGTG
TACGAACCTCCTGGGTGATCGGAGGGAGATCAAGGCTTATGGGGAGAATA
CGTGGAGTAGATGGGCGAGGAATAGGCCTATTGCGACGTCTGTCTATCAG
GACAGAGTGGGTCGGGAACACCTGAAGATGAACTTCCACGTCGAAGGTCC
TCTTAATTCCGGAACCGTGTTTGTGCACATGATGAAGCCGTTGAATGAGC
ATCACTGGGAGTATCAGCTTCTTGCTTTGGAAGTGCCGGGACATTCCCGG
GTTGTGCTTGAAGAAGCGCGCGAGAAGCCTGGCGTTGGGCAAGCACTGAA
GATCTTTGGCATTAAGTGGCGGTAG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005744TIM23 mitochondrial import inner membrane translocase complex
Vocabulary: Biological Process
TermDefinition
GO:0030150protein import into mitochondrial matrix
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
TIM21CBS51388_010208Aspergillus niger CBS 513.88gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_010208-T1CBS51388_010208-T1-proteinAspergillus niger CBS 513.88polypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_010208-T1.exon1CBS51388_010208-T1.exon1Aspergillus niger CBS 513.88exon
CBS51388_010208-T1.exon2CBS51388_010208-T1.exon2Aspergillus niger CBS 513.88exon
CBS51388_010208-T1.exon3CBS51388_010208-T1.exon3Aspergillus niger CBS 513.88exon
CBS51388_010208-T1.exon4CBS51388_010208-T1.exon4Aspergillus niger CBS 513.88exon
CBS51388_010208-T1.exon5CBS51388_010208-T1.exon5Aspergillus niger CBS 513.88exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_010208-T1.cdsCBS51388_010208-T1.cdsAspergillus niger CBS 513.88CDS


Properties
Property NameValue
DBxrefInterPro:IPR038552
DBxrefInterPro:IPR013261
DBxrefPFAM:PF08294
DBxrefPFAM:PF08695
Productmitochondrial import inner membrane translocase subunit tim21
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger CBS 513.88 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
An16supercontigAn16:1210645..1211637 +
Powered by Drupal