|
|
Sequences
The following sequences are available for this feature:
mRNA from alignment at An17:200535..201761+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >CBS51388_010559-T1 ID=CBS51388_010559-T1|Name=CBS51388_010559-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=1227bp|location=Sequence derived from alignment at An17:200535..201761+ (Aspergillus niger CBS 513.88)
ATGGCTGAAGCAACACCCCCAACTGAAACAGTAACCCCTCCTACGGAGGA
GGTCGTCGAAGACCAACAACAAACCCAGCAACAAGAAAACGAAACAACAG
AAGAAACCACCGCCCTAACAACCACCGCCGACGGCGCCGTCGAACCGCAA
AAGAAGACCAAAAAGATAATCCGACGCAAGCGCCGCCCAGCACGCCCACA
AGTCGACCCAGCGACAATCAAATCCGAGCCCCCACCCCAAGTCGGCACAA
TCTTCAACATCTGGTACAACAAATGGAGCGGCGGTGACCGCGAAAACTCC
TACCTAAGCAAGACGGCAGCACCCTCACGATGCAACATCGCGCGCGACAG
CGGCTACACACGGGCCGATAAAGTGCCCGGGTCATACTTCTGCCTGTTCT
TCGCGCGCGGGATATGCCCGCGCGGCGCAGAGTGCGAATACCTGCACCGT
TTACCAACACTGCACGACATATTCAACCCGAACGTGGATTGCTTTGGACG
GGACAAGTTCAGTGACTATCGGGATGATATGGGTGGTGTAGGATCATTCA
TGAGACAGAATCGCACGTTGTATGTGGGACGGATTCATGTGACGGACTCG
ATTGAGGAGGTGGTGGCGAGGAATTTCCAGGAATGGGGACAGATTGATCG
GATTCGGGTGCTTACGTCCCGGGGTGTTGCGTTCGTGACGTATACAAATG
AGGCGAATGCGCAGTTTGCGAAGGAGGCGATGGCGCATCAGAGTTTGGAT
CATAATGAGATTCTGAATGTGAGGTGGGCTACGGTCGATCCGAATCCGTT
GGCGCAGAAGAGGGAGGCGAGACGGCTGGAAGAGCAGGCTGCTGAGGCGG
TTAGGAGGGCGTTGCCGGCGGAGTTTGTGGCTGAGTTGGAAGGCAGGGAT
CCTGAGGCCAAGAAGAGGAAGAAGATTGAGGGGAGTTATGGGTTGCAGGG
GTATGAGCCGCCGGATGAGGTGTGGTTCTCGCGTGCGAAGGAGTTGGAGG
ATGCGAATGCGATTGCGCAATTGGAGGCTCCAGAGCAGCCGCTGATGATT
GAGGGTGCCTCTGAGACTGCTGCTGCTGCTCCGCAGGAGGAACAGGCCGG
AGGGATCTTCTCCAGCTCTGCTGTTGCGGCGTTGAAGGGCCTGGCTGGCG
GTGCTGTCACGACGCAGCAGGCGCCTAAAGCTGCTGGACCTCTGGTGGCG
TACGGGAGTGACGATGATAGCGAGTAA back to topCoding sequence (CDS) from alignment at An17:200535..201761+ >CBS51388_010559-T1 ID=CBS51388_010559-T1|Name=CBS51388_010559-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=1227bp|location=Sequence derived from alignment at An17:200535..201761+ (Aspergillus niger CBS 513.88)
ATGGCTGAAGCAACACCCCCAACTGAAACAGTAACCCCTCCTACGGAGGA
GGTCGTCGAAGACCAACAACAAACCCAGCAACAAGAAAACGAAACAACAG
AAGAAACCACCGCCCTAACAACCACCGCCGACGGCGCCGTCGAACCGCAA
AAGAAGACCAAAAAGATAATCCGACGCAAGCGCCGCCCAGCACGCCCACA
AGTCGACCCAGCGACAATCAAATCCGAGCCCCCACCCCAAGTCGGCACAA
TCTTCAACATCTGGTACAACAAATGGAGCGGCGGTGACCGCGAAAACTCC
TACCTAAGCAAGACGGCAGCACCCTCACGATGCAACATCGCGCGCGACAG
CGGCTACACACGGGCCGATAAAGTGCCCGGGTCATACTTCTGCCTGTTCT
TCGCGCGCGGGATATGCCCGCGCGGCGCAGAGTGCGAATACCTGCACCGT
TTACCAACACTGCACGACATATTCAACCCGAACGTGGATTGCTTTGGACG
GGACAAGTTCAGTGACTATCGGGATGATATGGGTGGTGTAGGATCATTCA
TGAGACAGAATCGCACGTTGTATGTGGGACGGATTCATGTGACGGACTCG
ATTGAGGAGGTGGTGGCGAGGAATTTCCAGGAATGGGGACAGATTGATCG
GATTCGGGTGCTTACGTCCCGGGGTGTTGCGTTCGTGACGTATACAAATG
AGGCGAATGCGCAGTTTGCGAAGGAGGCGATGGCGCATCAGAGTTTGGAT
CATAATGAGATTCTGAATGTGAGGTGGGCTACGGTCGATCCGAATCCGTT
GGCGCAGAAGAGGGAGGCGAGACGGCTGGAAGAGCAGGCTGCTGAGGCGG
TTAGGAGGGCGTTGCCGGCGGAGTTTGTGGCTGAGTTGGAAGGCAGGGAT
CCTGAGGCCAAGAAGAGGAAGAAGATTGAGGGGAGTTATGGGTTGCAGGG
GTATGAGCCGCCGGATGAGGTGTGGTTCTCGCGTGCGAAGGAGTTGGAGG
ATGCGAATGCGATTGCGCAATTGGAGGCTCCAGAGCAGCCGCTGATGATT
GAGGGTGCCTCTGAGACTGCTGCTGCTGCTCCGCAGGAGGAACAGGCCGG
AGGGATCTTCTCCAGCTCTGCTGTTGCGGCGTTGAAGGGCCTGGCTGGCG
GTGCTGTCACGACGCAGCAGGCGCCTAAAGCTGCTGGACCTCTGGTGGCG
TACGGGAGTGACGATGATAGCGAGTAA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003723 | RNA binding |
| GO:0046872 | metal ion binding |
| GO:0003676 | nucleic acid binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR035979 |
| DBxref | InterPro:IPR036855 |
| DBxref | InterPro:IPR034181 |
| DBxref | InterPro:IPR000571 |
| DBxref | InterPro:IPR032297 |
| DBxref | InterPro:IPR012677 |
| DBxref | InterPro:IPR000504 |
| DBxref | PFAM:PF00642 |
| DBxref | PFAM:PF16131 |
| DBxref | PFAM:PF00076 |
| Product | Pre-mRNA-splicing factor |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| An17 | supercontig | An17:200535..201761 + |
|
