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CBS51388_010627-T1, CBS51388_010627-T1 (mRNA) Aspergillus niger CBS 513.88

Overview
NameCBS51388_010627-T1
Unique NameCBS51388_010627-T1
TypemRNA
OrganismAspergillus niger CBS 513.88
Sequences
The following sequences are available for this feature:

mRNA from alignment at An17:430283..431316+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>CBS51388_010627-T1 ID=CBS51388_010627-T1|Name=CBS51388_010627-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=1034bp|location=Sequence derived from alignment at An17:430283..431316+ (Aspergillus niger CBS 513.88)
ATGGCGGTCCGCGCGCAGTTCGAGAACTCCAACGAGTGAGACGCACCCCG
GAGAATTTTCTGCTGGCCTGCTTGACCATGCGGCCCAGACCTCGCAGCTT
CTGGAATCTTAACTAACGTATTCCTTGTTTTCCAGAGTCGGTGTTTTCTC
CCGTCTCACCAACTCGTACGCTATTGTTGCCATTGGCGCCTCCGAGAACT
TCTACAGGTGCTTATATACCCGTTTCTGCCAGAACCACAAACCAGTCCCA
TTAACGCTCCTTCCAGTGTATTCGAGGCCGAATTGCAAGATGTCATTCCC
ATCTGCCACGCAACCATTGCCGGAACCCGCATCGTTGGCCGTCTGACGGC
AGGGTATGTCTAGATCCGATATCCATTTGGATCTCTGTATCAACCCCGCT
GACCATCTTGCCCCCAATATCAGAAACCGTAATGGTCTCCTCGTCCCCAC
CACCACGACAGACCAAGAGCTTCAACATCTCCGGAATACGCTACCCGAAT
CGGTAAAGATTCAACGTATAGAGGAACGTCTATCGGCTCTGGGGAACGTC
ATCTGCTGCAATGACCATGTTGCGCTGATCCACCCGGATCTCGAGCGGGA
AACCGAAGAGATGTATGTCGTGCTGCCAATATCTGCAAGTACTGCGCTCA
ATGCTAACATGCTAAACCAACAGCATCGCCGATGTCCTCGGTGTCGAAGT
CTTCCGTCAAACCGTCGCCGATAACGTCCTGACTGGCTCCTACATGGCCC
TCTCCAACCAAGGTGGTATCGTCCACCCCAAGACCTCCATCCGTGACCAG
GATGAACTTTCCTCCCTCCTGCAAGTGCCCCTCGTCGCTGGTAGTGTCAA
CCGCGGTAGCCCCGTCGTCGGTGCCGGCATGGTCGTGAACGACTGGCTCG
CTGTCACGGGTCTGGACACGACAGCCACGGAATTGAGTGTCATTGAAAGT
GTCTTCCGTCTGGGTGAGATGGGTCCCCGTGGTGTTGGAATGGGCGACGC
CAACAAGGAGAGTATTGTGGAGAGTTTCTACTAG
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Coding sequence (CDS) from alignment at An17:430283..431316+

>CBS51388_010627-T1 ID=CBS51388_010627-T1|Name=CBS51388_010627-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=3720bp|location=Sequence derived from alignment at An17:430283..431316+ (Aspergillus niger CBS 513.88)
ATGGCGGTCCGCGCGCAGTTCGAGAACTCCAACGAAGTCGGTGTTTTCTC
CCGTCTCACCAACTCGTACGCTATTGTTGCCATTGGCGCCTCCGAGAACT
TCTACAGTGTATTCGAGGCCGAATTGCAAGATGTCATTCCCATCTGCCAC
GCAACCATTGCCGGAACCCGCATCGTTGGCCGTCTGACGGCAGGAAACCG
TAATGGTCTCCTCGTCCCCACCACCACGACAGACCAAGAGCTTCAACATC
TCCGGAATACGCTACCCGAATCGGTAAAGATTCAACGTATAGAGGAACGT
CTATCGGCTCTGGGGAACGTCATCTGCTGCAATGACCATGTTGCGCTGAT
CCACCCGGATCTCGAGCGGGAAACCGAAGAGATCATCGCCGATGTCCTCG
GTGTCGAAGTCTTCCGTCAAACCGTCGCCGATAACGTCCTGACTGGCTCC
TACATGGCCCTCTCCAACCAAGGTGGTATCGTCCACCCCAAGACCTCCAT
CCGTGACCAGGATGAACTTTCCTCCCTCCTGCAAGTGCCCCTCGTCGCTG
GTAGTGTCAACCGCGGTAGCCCCGTCGTCGGTGCCGGCATGGTCGTGAAC
GACTGGCTCGCTGTCACGGGTCTGGACACGACAGCCACGGAATTGAGTGT
CATTGAAAGTGTCTTCCGTCTGGGTGAGATGGGTCCCCGTGGTGTTGGAA
TGGGCGACGCCAACAAGGAGAGTATTGTGGAGAGTTTCTACTAGATGGCG
GTCCGCGCGCAGTTCGAGAACTCCAACGAAGTCGGTGTTTTCTCCCGTCT
CACCAACTCGTACGCTATTGTTGCCATTGGCGCCTCCGAGAACTTCTACA
GTGTATTCGAGGCCGAATTGCAAGATGTCATTCCCATCTGCCACGCAACC
ATTGCCGGAACCCGCATCGTTGGCCGTCTGACGGCAGGAAACCGTAATGG
TCTCCTCGTCCCCACCACCACGACAGACCAAGAGCTTCAACATCTCCGGA
ATACGCTACCCGAATCGGTAAAGATTCAACGTATAGAGGAACGTCTATCG
GCTCTGGGGAACGTCATCTGCTGCAATGACCATGTTGCGCTGATCCACCC
GGATCTCGAGCGGGAAACCGAAGAGATCATCGCCGATGTCCTCGGTGTCG
AAGTCTTCCGTCAAACCGTCGCCGATAACGTCCTGACTGGCTCCTACATG
GCCCTCTCCAACCAAGGTGGTATCGTCCACCCCAAGACCTCCATCCGTGA
CCAGGATGAACTTTCCTCCCTCCTGCAAGTGCCCCTCGTCGCTGGTAGTG
TCAACCGCGGTAGCCCCGTCGTCGGTGCCGGCATGGTCGTGAACGACTGG
CTCGCTGTCACGGGTCTGGACACGACAGCCACGGAATTGAGTGTCATTGA
AAGTGTCTTCCGTCTGGGTGAGATGGGTCCCCGTGGTGTTGGAATGGGCG
ACGCCAACAAGGAGAGTATTGTGGAGAGTTTCTACTAGATGGCGGTCCGC
GCGCAGTTCGAGAACTCCAACGAAGTCGGTGTTTTCTCCCGTCTCACCAA
CTCGTACGCTATTGTTGCCATTGGCGCCTCCGAGAACTTCTACAGTGTAT
TCGAGGCCGAATTGCAAGATGTCATTCCCATCTGCCACGCAACCATTGCC
GGAACCCGCATCGTTGGCCGTCTGACGGCAGGAAACCGTAATGGTCTCCT
CGTCCCCACCACCACGACAGACCAAGAGCTTCAACATCTCCGGAATACGC
TACCCGAATCGGTAAAGATTCAACGTATAGAGGAACGTCTATCGGCTCTG
GGGAACGTCATCTGCTGCAATGACCATGTTGCGCTGATCCACCCGGATCT
CGAGCGGGAAACCGAAGAGATCATCGCCGATGTCCTCGGTGTCGAAGTCT
TCCGTCAAACCGTCGCCGATAACGTCCTGACTGGCTCCTACATGGCCCTC
TCCAACCAAGGTGGTATCGTCCACCCCAAGACCTCCATCCGTGACCAGGA
TGAACTTTCCTCCCTCCTGCAAGTGCCCCTCGTCGCTGGTAGTGTCAACC
GCGGTAGCCCCGTCGTCGGTGCCGGCATGGTCGTGAACGACTGGCTCGCT
GTCACGGGTCTGGACACGACAGCCACGGAATTGAGTGTCATTGAAAGTGT
CTTCCGTCTGGGTGAGATGGGTCCCCGTGGTGTTGGAATGGGCGACGCCA
ACAAGGAGAGTATTGTGGAGAGTTTCTACTAGATGGCGGTCCGCGCGCAG
TTCGAGAACTCCAACGAAGTCGGTGTTTTCTCCCGTCTCACCAACTCGTA
CGCTATTGTTGCCATTGGCGCCTCCGAGAACTTCTACAGTGTATTCGAGG
CCGAATTGCAAGATGTCATTCCCATCTGCCACGCAACCATTGCCGGAACC
CGCATCGTTGGCCGTCTGACGGCAGGAAACCGTAATGGTCTCCTCGTCCC
CACCACCACGACAGACCAAGAGCTTCAACATCTCCGGAATACGCTACCCG
AATCGGTAAAGATTCAACGTATAGAGGAACGTCTATCGGCTCTGGGGAAC
GTCATCTGCTGCAATGACCATGTTGCGCTGATCCACCCGGATCTCGAGCG
GGAAACCGAAGAGATCATCGCCGATGTCCTCGGTGTCGAAGTCTTCCGTC
AAACCGTCGCCGATAACGTCCTGACTGGCTCCTACATGGCCCTCTCCAAC
CAAGGTGGTATCGTCCACCCCAAGACCTCCATCCGTGACCAGGATGAACT
TTCCTCCCTCCTGCAAGTGCCCCTCGTCGCTGGTAGTGTCAACCGCGGTA
GCCCCGTCGTCGGTGCCGGCATGGTCGTGAACGACTGGCTCGCTGTCACG
GGTCTGGACACGACAGCCACGGAATTGAGTGTCATTGAAAGTGTCTTCCG
TCTGGGTGAGATGGGTCCCCGTGGTGTTGGAATGGGCGACGCCAACAAGG
AGAGTATTGTGGAGAGTTTCTACTAGATGGCGGTCCGCGCGCAGTTCGAG
AACTCCAACGAAGTCGGTGTTTTCTCCCGTCTCACCAACTCGTACGCTAT
TGTTGCCATTGGCGCCTCCGAGAACTTCTACAGTGTATTCGAGGCCGAAT
TGCAAGATGTCATTCCCATCTGCCACGCAACCATTGCCGGAACCCGCATC
GTTGGCCGTCTGACGGCAGGAAACCGTAATGGTCTCCTCGTCCCCACCAC
CACGACAGACCAAGAGCTTCAACATCTCCGGAATACGCTACCCGAATCGG
TAAAGATTCAACGTATAGAGGAACGTCTATCGGCTCTGGGGAACGTCATC
TGCTGCAATGACCATGTTGCGCTGATCCACCCGGATCTCGAGCGGGAAAC
CGAAGAGATCATCGCCGATGTCCTCGGTGTCGAAGTCTTCCGTCAAACCG
TCGCCGATAACGTCCTGACTGGCTCCTACATGGCCCTCTCCAACCAAGGT
GGTATCGTCCACCCCAAGACCTCCATCCGTGACCAGGATGAACTTTCCTC
CCTCCTGCAAGTGCCCCTCGTCGCTGGTAGTGTCAACCGCGGTAGCCCCG
TCGTCGGTGCCGGCATGGTCGTGAACGACTGGCTCGCTGTCACGGGTCTG
GACACGACAGCCACGGAATTGAGTGTCATTGAAAGTGTCTTCCGTCTGGG
TGAGATGGGTCCCCGTGGTGTTGGAATGGGCGACGCCAACAAGGAGAGTA
TTGTGGAGAGTTTCTACTAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0042256mature ribosome assembly
Vocabulary: Molecular Function
TermDefinition
GO:0043022ribosome binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
TIF6CBS51388_010627Aspergillus niger CBS 513.88gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_010627-T1CBS51388_010627-T1-proteinAspergillus niger CBS 513.88polypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_010627-T1.exon1CBS51388_010627-T1.exon1Aspergillus niger CBS 513.88exon
CBS51388_010627-T1.exon2CBS51388_010627-T1.exon2Aspergillus niger CBS 513.88exon
CBS51388_010627-T1.exon3CBS51388_010627-T1.exon3Aspergillus niger CBS 513.88exon
CBS51388_010627-T1.exon4CBS51388_010627-T1.exon4Aspergillus niger CBS 513.88exon
CBS51388_010627-T1.exon5CBS51388_010627-T1.exon5Aspergillus niger CBS 513.88exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_010627-T1.cdsCBS51388_010627-T1.cdsAspergillus niger CBS 513.88CDS


Properties
Property NameValue
NoteBUSCO:EOG092644O2
DBxrefInterPro:IPR002769
DBxrefPFAM:PF01912
ProductEukaryotic translation initiation factor 6
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger CBS 513.88 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
An17supercontigAn17:430283..431316 +
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