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CBS51388_010661-T1, CBS51388_010661-T1 (mRNA) Aspergillus niger CBS 513.88

Overview
NameCBS51388_010661-T1
Unique NameCBS51388_010661-T1
TypemRNA
OrganismAspergillus niger CBS 513.88
Sequences
The following sequences are available for this feature:

mRNA from alignment at An17:544279..545153+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>CBS51388_010661-T1 ID=CBS51388_010661-T1|Name=CBS51388_010661-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=875bp|location=Sequence derived from alignment at An17:544279..545153+ (Aspergillus niger CBS 513.88)
ATGGCTCCCAAGGTGGAAAACAAGCAAGGTAGGTACAATTTATGCGATTC
ATCCGTCTTCTTGAAATTTGCAGATTTGTTCTTGTCGAAAACCCGGTTTT
GTGATCCTCGAATGGCATCTACATGTGGCGGTACTTCGGGGGATAAGGCC
CTCTCAGCACGAACGAAAAAAAGGCATTCCCGATGAACGATTCGAGCCCT
GTGTTTCCCCCGTTATTGTCAACTTGCATGGATCTTATTTCGAGCGAGCG
ATGGGCTATATTTTATTTTGAAGTGACGGACGGGCTGACATTCTGGATCT
ATAGGCAAGACCAAGCCCAGCGACAAGGCTGGTGCTGCCGCCAAGGCAGT
CATTAAGGGTGCTGGCGTACGTTCTCACAAGGCTTCAAATCCGCCCATGC
TCTGTTCGGTGCTAAATGTCATATAATTTTTCCAGGCGCACAAGGCTCGT
AAGGTCCGCACCTCTACGACCTTCCACCGCCCCAAGACCCTTCAGCTTTC
CCGGTCGCCCAAGTACCCCCGCAAGTCGATCCCCCATGTCCCTCGCCTCG
ATGCGCACAAGGTCATCCTCTACCCTCTCAACACCGAGAGCGCCATGAAG
AAGATCGAGGAGAACAACACCCTGGTCTTCATCGTCGACGTCAAGTCCAA
CAAGCGCCAGATCAAGCTCGCCCTCAAGAAGCTGTACGACGTTGACACCG
TCAAGGTCAACACTCTCGTCAGGTACGACGACCTATCCCATAATCATTGA
TGTACTACAGAAGTCGGAATATCTAACCTTCCTTTAGACCCGATGGACTG
AAGAAGGCCTTCGCCCGTCTAACCCCTGACGTTGATGCTCTGGACATCGC
TGCCACCAAGCTTGCCATCGTCTAG
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Coding sequence (CDS) from alignment at An17:544279..545153+

>CBS51388_010661-T1 ID=CBS51388_010661-T1|Name=CBS51388_010661-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=1860bp|location=Sequence derived from alignment at An17:544279..545153+ (Aspergillus niger CBS 513.88)
ATGGCTCCCAAGGTGGAAAACAAGCAAGGCAAGACCAAGCCCAGCGACAA
GGCTGGTGCTGCCGCCAAGGCAGTCATTAAGGGTGCTGGCGCGCACAAGG
CTCGTAAGGTCCGCACCTCTACGACCTTCCACCGCCCCAAGACCCTTCAG
CTTTCCCGGTCGCCCAAGTACCCCCGCAAGTCGATCCCCCATGTCCCTCG
CCTCGATGCGCACAAGGTCATCCTCTACCCTCTCAACACCGAGAGCGCCA
TGAAGAAGATCGAGGAGAACAACACCCTGGTCTTCATCGTCGACGTCAAG
TCCAACAAGCGCCAGATCAAGCTCGCCCTCAAGAAGCTGTACGACGTTGA
CACCGTCAAGGTCAACACTCTCGTCAGACCCGATGGACTGAAGAAGGCCT
TCGCCCGTCTAACCCCTGACGTTGATGCTCTGGACATCGCTGCCACCAAG
CTTGCCATCGTCTAGATGGCTCCCAAGGTGGAAAACAAGCAAGGCAAGAC
CAAGCCCAGCGACAAGGCTGGTGCTGCCGCCAAGGCAGTCATTAAGGGTG
CTGGCGCGCACAAGGCTCGTAAGGTCCGCACCTCTACGACCTTCCACCGC
CCCAAGACCCTTCAGCTTTCCCGGTCGCCCAAGTACCCCCGCAAGTCGAT
CCCCCATGTCCCTCGCCTCGATGCGCACAAGGTCATCCTCTACCCTCTCA
ACACCGAGAGCGCCATGAAGAAGATCGAGGAGAACAACACCCTGGTCTTC
ATCGTCGACGTCAAGTCCAACAAGCGCCAGATCAAGCTCGCCCTCAAGAA
GCTGTACGACGTTGACACCGTCAAGGTCAACACTCTCGTCAGACCCGATG
GACTGAAGAAGGCCTTCGCCCGTCTAACCCCTGACGTTGATGCTCTGGAC
ATCGCTGCCACCAAGCTTGCCATCGTCTAGATGGCTCCCAAGGTGGAAAA
CAAGCAAGGCAAGACCAAGCCCAGCGACAAGGCTGGTGCTGCCGCCAAGG
CAGTCATTAAGGGTGCTGGCGCGCACAAGGCTCGTAAGGTCCGCACCTCT
ACGACCTTCCACCGCCCCAAGACCCTTCAGCTTTCCCGGTCGCCCAAGTA
CCCCCGCAAGTCGATCCCCCATGTCCCTCGCCTCGATGCGCACAAGGTCA
TCCTCTACCCTCTCAACACCGAGAGCGCCATGAAGAAGATCGAGGAGAAC
AACACCCTGGTCTTCATCGTCGACGTCAAGTCCAACAAGCGCCAGATCAA
GCTCGCCCTCAAGAAGCTGTACGACGTTGACACCGTCAAGGTCAACACTC
TCGTCAGACCCGATGGACTGAAGAAGGCCTTCGCCCGTCTAACCCCTGAC
GTTGATGCTCTGGACATCGCTGCCACCAAGCTTGCCATCGTCTAGATGGC
TCCCAAGGTGGAAAACAAGCAAGGCAAGACCAAGCCCAGCGACAAGGCTG
GTGCTGCCGCCAAGGCAGTCATTAAGGGTGCTGGCGCGCACAAGGCTCGT
AAGGTCCGCACCTCTACGACCTTCCACCGCCCCAAGACCCTTCAGCTTTC
CCGGTCGCCCAAGTACCCCCGCAAGTCGATCCCCCATGTCCCTCGCCTCG
ATGCGCACAAGGTCATCCTCTACCCTCTCAACACCGAGAGCGCCATGAAG
AAGATCGAGGAGAACAACACCCTGGTCTTCATCGTCGACGTCAAGTCCAA
CAAGCGCCAGATCAAGCTCGCCCTCAAGAAGCTGTACGACGTTGACACCG
TCAAGGTCAACACTCTCGTCAGACCCGATGGACTGAAGAAGGCCTTCGCC
CGTCTAACCCCTGACGTTGATGCTCTGGACATCGCTGCCACCAAGCTTGC
CATCGTCTAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RPL23ACBS51388_010661Aspergillus niger CBS 513.88gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_010661-T1.exon1CBS51388_010661-T1.exon1Aspergillus niger CBS 513.88exon
CBS51388_010661-T1.exon2CBS51388_010661-T1.exon2Aspergillus niger CBS 513.88exon
CBS51388_010661-T1.exon3CBS51388_010661-T1.exon3Aspergillus niger CBS 513.88exon
CBS51388_010661-T1.exon4CBS51388_010661-T1.exon4Aspergillus niger CBS 513.88exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_010661-T1.cdsCBS51388_010661-T1.cdsAspergillus niger CBS 513.88CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_010661-T1CBS51388_010661-T1-proteinAspergillus niger CBS 513.88polypeptide


Properties
Property NameValue
NoteBUSCO:EOG092657YR
DBxrefInterPro:IPR012678
DBxrefInterPro:IPR012677
DBxrefInterPro:IPR013025
DBxrefInterPro:IPR005633
DBxrefPFAM:PF03939
DBxrefPFAM:PF00276
Product60S ribosomal protein L23A
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger CBS 513.88 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
An17supercontigAn17:544279..545153 +
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