|
|
Sequences
The following sequences are available for this feature:
mRNA from alignment at An18:740333..741610- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below. >CBS51388_010931-T1 ID=CBS51388_010931-T1|Name=CBS51388_010931-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=1278bp|location=Sequence derived from alignment at An18:740333..741610- (Aspergillus niger CBS 513.88)
ATGGCTGCTGTCCAGGGAGCTATTTCGAAGCGCCGCAAGTTCGTCGCCGA
CGGTGTCTTCTATGCCGAGCTGAACGAGTTCTTCCAGCGCGAGCTGGCTG
AGGAGGGATACTCCGGCGTCGAAGTCCGTGTCACTCCCACCGTCACCGAC
ATCAGTACGTCCGCCCGATATTTCATTTTGCATTTGATTCCAGATCCTGT
GTGTTGTGTTGGAAAAGGCCGGAAATTGGAGATTGGAAGAATCGACCGGG
GAAAAGAATGGTGATCCGGGAGGAGGAAAAGAAAAACAGTTATCGGGAAT
ACGGCCGGGAATATCAACCAACCACGGGGAACTACTGGAATTGGAGACAA
TTTTATATACAAAGGAAGATGGAATATGTGCCAGTTGCTAACGGATGCTT
TCTTTACAGTCATCCGTGCCACCCACACCCAGGAGGTTCTCGGTGAGCAG
GGCCGCCGCATCCGCGAGCTCACCTCCCTCATCCAGAAGCGCTTCAAGTT
CCCCGAGAACTCCGTTTCCCTCTATGCCGCTAAGGTCCAGAACCGCGGTC
TCTCCGCCGTCGCTCAGTGCGAGTCCCTCCGCTACAAGCTTCTCAACGGT
CTGGCCGTCCGCCGTGCCTGCTACGGTGTTCTCCGTTTCATCATGGAGAG
CGGTGCCAAGGGTTGCGAGGTCGTCGTCTCCGGAAAGCTCCGTGCTGCCC
GTGCCAAGTCCATGAAGTTCACTGTACGTCTACCAACAGCGATTGATTTT
GTTTTTCGAATGGTCGGATCGGTCCCGAAGCAGTGGTGGAATTTGCGCAT
ATCCAACGACAACGATGCCTACTACGATCTGCAAGAACGAAGCAACTGTG
CAAAGGACCGGACCGAAGCTCTACACCATTCGAAACACTCCATCATATGC
ATGCTATAACGGTATCAGAAAACTAACAACAATTCTTCTCAATAGGACGG
TTTCATGATCCACTCCGGTCAGCCCGCCAAGGAATTCATCGACAGCGCTA
CCCGCCACGTTCTCCTCCGCCAGGGTGTCCTCGGTATCAAGGTTAAGATC
ATGCGCGGTTCCGACCCCGAGGGCAAGGCCGGTCCCCAGAAGACTCTCCC
CGATGCCGTCACCATCATCGAGCCCAAGGAGGAGCAGCCCGTCCTGCAGC
CCATGAGCCAGGACTACGGCGCCAAGGCTCTTGCCGCTCAGCAGGCCGCC
GAGCAGCAGCGTCTGGCCGAGCAGCAGGCCACCGAGGCCCAGGAGGGTGC
CGGTGCCGAGGCTTACGCCCAGGAGTAA back to topCoding sequence (CDS) from alignment at An18:740333..741610- >CBS51388_010931-T1 ID=CBS51388_010931-T1|Name=CBS51388_010931-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=2403bp|location=Sequence derived from alignment at An18:740333..741610- (Aspergillus niger CBS 513.88)
GACGGTTTCATGATCCACTCCGGTCAGCCCGCCAAGGAATTCATCGACAG
CGCTACCCGCCACGTTCTCCTCCGCCAGGGTGTCCTCGGTATCAAGGTTA
AGATCATGCGCGGTTCCGACCCCGAGGGCAAGGCCGGTCCCCAGAAGACT
CTCCCCGATGCCGTCACCATCATCGAGCCCAAGGAGGAGCAGCCCGTCCT
GCAGCCCATGAGCCAGGACTACGGCGCCAAGGCTCTTGCCGCTCAGCAGG
CCGCCGAGCAGCAGCGTCTGGCCGAGCAGCAGGCCACCGAGGCCCAGGAG
GGTGCCGGTGCCGAGGCTTACGCCCAGGAGTAATCATCCGTGCCACCCAC
ACCCAGGAGGTTCTCGGTGAGCAGGGCCGCCGCATCCGCGAGCTCACCTC
CCTCATCCAGAAGCGCTTCAAGTTCCCCGAGAACTCCGTTTCCCTCTATG
CCGCTAAGGTCCAGAACCGCGGTCTCTCCGCCGTCGCTCAGTGCGAGTCC
CTCCGCTACAAGCTTCTCAACGGTCTGGCCGTCCGCCGTGCCTGCTACGG
TGTTCTCCGTTTCATCATGGAGAGCGGTGCCAAGGGTTGCGAGGTCGTCG
TCTCCGGAAAGCTCCGTGCTGCCCGTGCCAAGTCCATGAAGTTCACTATG
GCTGCTGTCCAGGGAGCTATTTCGAAGCGCCGCAAGTTCGTCGCCGACGG
TGTCTTCTATGCCGAGCTGAACGAGTTCTTCCAGCGCGAGCTGGCTGAGG
AGGGATACTCCGGCGTCGAAGTCCGTGTCACTCCCACCGTCACCGACATC
AGACGGTTTCATGATCCACTCCGGTCAGCCCGCCAAGGAATTCATCGACA
GCGCTACCCGCCACGTTCTCCTCCGCCAGGGTGTCCTCGGTATCAAGGTT
AAGATCATGCGCGGTTCCGACCCCGAGGGCAAGGCCGGTCCCCAGAAGAC
TCTCCCCGATGCCGTCACCATCATCGAGCCCAAGGAGGAGCAGCCCGTCC
TGCAGCCCATGAGCCAGGACTACGGCGCCAAGGCTCTTGCCGCTCAGCAG
GCCGCCGAGCAGCAGCGTCTGGCCGAGCAGCAGGCCACCGAGGCCCAGGA
GGGTGCCGGTGCCGAGGCTTACGCCCAGGAGTAATCATCCGTGCCACCCA
CACCCAGGAGGTTCTCGGTGAGCAGGGCCGCCGCATCCGCGAGCTCACCT
CCCTCATCCAGAAGCGCTTCAAGTTCCCCGAGAACTCCGTTTCCCTCTAT
GCCGCTAAGGTCCAGAACCGCGGTCTCTCCGCCGTCGCTCAGTGCGAGTC
CCTCCGCTACAAGCTTCTCAACGGTCTGGCCGTCCGCCGTGCCTGCTACG
GTGTTCTCCGTTTCATCATGGAGAGCGGTGCCAAGGGTTGCGAGGTCGTC
GTCTCCGGAAAGCTCCGTGCTGCCCGTGCCAAGTCCATGAAGTTCACTAT
GGCTGCTGTCCAGGGAGCTATTTCGAAGCGCCGCAAGTTCGTCGCCGACG
GTGTCTTCTATGCCGAGCTGAACGAGTTCTTCCAGCGCGAGCTGGCTGAG
GAGGGATACTCCGGCGTCGAAGTCCGTGTCACTCCCACCGTCACCGACAT
CAGACGGTTTCATGATCCACTCCGGTCAGCCCGCCAAGGAATTCATCGAC
AGCGCTACCCGCCACGTTCTCCTCCGCCAGGGTGTCCTCGGTATCAAGGT
TAAGATCATGCGCGGTTCCGACCCCGAGGGCAAGGCCGGTCCCCAGAAGA
CTCTCCCCGATGCCGTCACCATCATCGAGCCCAAGGAGGAGCAGCCCGTC
CTGCAGCCCATGAGCCAGGACTACGGCGCCAAGGCTCTTGCCGCTCAGCA
GGCCGCCGAGCAGCAGCGTCTGGCCGAGCAGCAGGCCACCGAGGCCCAGG
AGGGTGCCGGTGCCGAGGCTTACGCCCAGGAGTAATCATCCGTGCCACCC
ACACCCAGGAGGTTCTCGGTGAGCAGGGCCGCCGCATCCGCGAGCTCACC
TCCCTCATCCAGAAGCGCTTCAAGTTCCCCGAGAACTCCGTTTCCCTCTA
TGCCGCTAAGGTCCAGAACCGCGGTCTCTCCGCCGTCGCTCAGTGCGAGT
CCCTCCGCTACAAGCTTCTCAACGGTCTGGCCGTCCGCCGTGCCTGCTAC
GGTGTTCTCCGTTTCATCATGGAGAGCGGTGCCAAGGGTTGCGAGGTCGT
CGTCTCCGGAAAGCTCCGTGCTGCCCGTGCCAAGTCCATGAAGTTCACTA
TGGCTGCTGTCCAGGGAGCTATTTCGAAGCGCCGCAAGTTCGTCGCCGAC
GGTGTCTTCTATGCCGAGCTGAACGAGTTCTTCCAGCGCGAGCTGGCTGA
GGAGGGATACTCCGGCGTCGAAGTCCGTGTCACTCCCACCGTCACCGACA
TCA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0015935 | small ribosomal subunit |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006412 | translation |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003735 | structural constituent of ribosome |
| GO:0003723 | RNA binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG092647L7 |
| DBxref | InterPro:IPR009019 |
| DBxref | InterPro:IPR018280 |
| DBxref | InterPro:IPR005703 |
| DBxref | InterPro:IPR001351 |
| DBxref | InterPro:IPR036419 |
| DBxref | InterPro:IPR015946 |
| DBxref | InterPro:IPR004044 |
| DBxref | PFAM:PF00189 |
| DBxref | PFAM:PF07650 |
| Product | 40S ribosomal protein S3 |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| An18 | supercontig | An18:740333..741610 - |
|
