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CBS51388_010973-T1, CBS51388_010973-T1 (mRNA) Aspergillus niger CBS 513.88

Overview
NameCBS51388_010973-T1
Unique NameCBS51388_010973-T1
TypemRNA
OrganismAspergillus niger CBS 513.88
Sequences
The following sequences are available for this feature:

mRNA from alignment at An18:868936..870062-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>CBS51388_010973-T1 ID=CBS51388_010973-T1|Name=CBS51388_010973-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=1127bp|location=Sequence derived from alignment at An18:868936..870062- (Aspergillus niger CBS 513.88)
ATGTCCGCCATCGAGCCAGTCGTGCGTACCGCCCCATCCCGAAACTATCA
TCCACATACAATCTCCTTGAAATTGAATACACATGTGTCAAATGAGGGCG
TTCAGGGTCCTGGAGTCGGAAATTCATATACAGAAGTACATTTGTCGCTG
ACTTGAATTCTTGGGTTTTCGCAGGTCGTCATTGACGGCAAGGGACACCT
CTTGGGTCGCCTGGCCAGCACTGTTGCTAAGCAGCTGCTCAACGGTCAGA
AGATTGTCGTCGTGAGATGTGAAGCCCTCAACATCTCCGGCGAGTTCTTC
CGTGCGAAGCGTATGTTCTATCCGACCCGGTTTCTTTCGATTTCATTCTG
CAATATGGATTTTCTTTGGGATGAATGGGAGTGCGACGGTTTTCGACATA
TGGAGGAGGACATCGGCAATTGATTGGAATATCTCTGGAGGAACAAGCAA
CACATCTGTGCTGGTGGACAACGGGCTGACCTGGATTTCGCGATATAGTC
AAGTACCACGCCTACCTTCGCAAGATGACTCGTTTCAACCCCACCCGCGG
AGGTGAGACTACCCGATGACTTTCCCCCTCTGATGGGGAAAGACGACACT
TATATCTTTTGCGGGACTCCGTGCTGAATCGCTACAGGTCCCTTCCACTT
CCGTGCCCCCTCCCGCATCTTCTACAAGGCTGTCCGCGGCATGATCCCCC
ACAAGACCGCCCGTGGTGCCGCCGCTATGGAGCGCCTGAAGGTTTTCGAG
GGTGTTCCTCCCCCCTACGACAAGAAGAAGCGCGTTGTCGTTCCCCAGGC
TCTGCGTGTTCTCCGCCTGCGCCCCGGCCGCAAGTACTGCACCGTTGGTC
GTCTCAGCCACGAGGTTGGCTGGAAGTACCAGGACGTTGTTGCCAGGTAC
GTTTATGCTGAAGTGGAGAGGATAAAATGGGAGATGTTGGAATATTGGGT
GCAGAAGGCTAACGGATTCGTTTTTTCTACTCTTACAGACTTGAGGAGCG
CAGAAAGGTTAAGAGCAGTGCATACTACGAGCGCAAGAAGGCCGCTCGCC
GCCAACTCGTCCACGCCCAGAAGTCGGCGGGTGTTAACGAGCAGACCAAG
AGCCAGCTCGCTCAGTACGGATACTAG
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Coding sequence (CDS) from alignment at An18:868936..870062-

>CBS51388_010973-T1 ID=CBS51388_010973-T1|Name=CBS51388_010973-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=3045bp|location=Sequence derived from alignment at An18:868936..870062- (Aspergillus niger CBS 513.88)
ACTTGAGGAGCGCAGAAAGGTTAAGAGCAGTGCATACTACGAGCGCAAGA
AGGCCGCTCGCCGCCAACTCGTCCACGCCCAGAAGTCGGCGGGTGTTAAC
GAGCAGACCAAGAGCCAGCTCGCTCAGTACGGATACTAGGTCCCTTCCAC
TTCCGTGCCCCCTCCCGCATCTTCTACAAGGCTGTCCGCGGCATGATCCC
CCACAAGACCGCCCGTGGTGCCGCCGCTATGGAGCGCCTGAAGGTTTTCG
AGGGTGTTCCTCCCCCCTACGACAAGAAGAAGCGCGTTGTCGTTCCCCAG
GCTCTGCGTGTTCTCCGCCTGCGCCCCGGCCGCAAGTACTGCACCGTTGG
TCGTCTCAGCCACGAGGTTGGCTGGAAGTACCAGGACGTTGTTGCCAGTC
AAGTACCACGCCTACCTTCGCAAGATGACTCGTTTCAACCCCACCCGCGG
AGGTCGTCATTGACGGCAAGGGACACCTCTTGGGTCGCCTGGCCAGCACT
GTTGCTAAGCAGCTGCTCAACGGTCAGAAGATTGTCGTCGTGAGATGTGA
AGCCCTCAACATCTCCGGCGAGTTCTTCCGTGCGAAGCATGTCCGCCATC
GAGCCAGTCACTTGAGGAGCGCAGAAAGGTTAAGAGCAGTGCATACTACG
AGCGCAAGAAGGCCGCTCGCCGCCAACTCGTCCACGCCCAGAAGTCGGCG
GGTGTTAACGAGCAGACCAAGAGCCAGCTCGCTCAGTACGGATACTAGGT
CCCTTCCACTTCCGTGCCCCCTCCCGCATCTTCTACAAGGCTGTCCGCGG
CATGATCCCCCACAAGACCGCCCGTGGTGCCGCCGCTATGGAGCGCCTGA
AGGTTTTCGAGGGTGTTCCTCCCCCCTACGACAAGAAGAAGCGCGTTGTC
GTTCCCCAGGCTCTGCGTGTTCTCCGCCTGCGCCCCGGCCGCAAGTACTG
CACCGTTGGTCGTCTCAGCCACGAGGTTGGCTGGAAGTACCAGGACGTTG
TTGCCAGTCAAGTACCACGCCTACCTTCGCAAGATGACTCGTTTCAACCC
CACCCGCGGAGGTCGTCATTGACGGCAAGGGACACCTCTTGGGTCGCCTG
GCCAGCACTGTTGCTAAGCAGCTGCTCAACGGTCAGAAGATTGTCGTCGT
GAGATGTGAAGCCCTCAACATCTCCGGCGAGTTCTTCCGTGCGAAGCATG
TCCGCCATCGAGCCAGTCACTTGAGGAGCGCAGAAAGGTTAAGAGCAGTG
CATACTACGAGCGCAAGAAGGCCGCTCGCCGCCAACTCGTCCACGCCCAG
AAGTCGGCGGGTGTTAACGAGCAGACCAAGAGCCAGCTCGCTCAGTACGG
ATACTAGGTCCCTTCCACTTCCGTGCCCCCTCCCGCATCTTCTACAAGGC
TGTCCGCGGCATGATCCCCCACAAGACCGCCCGTGGTGCCGCCGCTATGG
AGCGCCTGAAGGTTTTCGAGGGTGTTCCTCCCCCCTACGACAAGAAGAAG
CGCGTTGTCGTTCCCCAGGCTCTGCGTGTTCTCCGCCTGCGCCCCGGCCG
CAAGTACTGCACCGTTGGTCGTCTCAGCCACGAGGTTGGCTGGAAGTACC
AGGACGTTGTTGCCAGTCAAGTACCACGCCTACCTTCGCAAGATGACTCG
TTTCAACCCCACCCGCGGAGGTCGTCATTGACGGCAAGGGACACCTCTTG
GGTCGCCTGGCCAGCACTGTTGCTAAGCAGCTGCTCAACGGTCAGAAGAT
TGTCGTCGTGAGATGTGAAGCCCTCAACATCTCCGGCGAGTTCTTCCGTG
CGAAGCATGTCCGCCATCGAGCCAGTCACTTGAGGAGCGCAGAAAGGTTA
AGAGCAGTGCATACTACGAGCGCAAGAAGGCCGCTCGCCGCCAACTCGTC
CACGCCCAGAAGTCGGCGGGTGTTAACGAGCAGACCAAGAGCCAGCTCGC
TCAGTACGGATACTAGGTCCCTTCCACTTCCGTGCCCCCTCCCGCATCTT
CTACAAGGCTGTCCGCGGCATGATCCCCCACAAGACCGCCCGTGGTGCCG
CCGCTATGGAGCGCCTGAAGGTTTTCGAGGGTGTTCCTCCCCCCTACGAC
AAGAAGAAGCGCGTTGTCGTTCCCCAGGCTCTGCGTGTTCTCCGCCTGCG
CCCCGGCCGCAAGTACTGCACCGTTGGTCGTCTCAGCCACGAGGTTGGCT
GGAAGTACCAGGACGTTGTTGCCAGTCAAGTACCACGCCTACCTTCGCAA
GATGACTCGTTTCAACCCCACCCGCGGAGGTCGTCATTGACGGCAAGGGA
CACCTCTTGGGTCGCCTGGCCAGCACTGTTGCTAAGCAGCTGCTCAACGG
TCAGAAGATTGTCGTCGTGAGATGTGAAGCCCTCAACATCTCCGGCGAGT
TCTTCCGTGCGAAGCATGTCCGCCATCGAGCCAGTCACTTGAGGAGCGCA
GAAAGGTTAAGAGCAGTGCATACTACGAGCGCAAGAAGGCCGCTCGCCGC
CAACTCGTCCACGCCCAGAAGTCGGCGGGTGTTAACGAGCAGACCAAGAG
CCAGCTCGCTCAGTACGGATACTAGGTCCCTTCCACTTCCGTGCCCCCTC
CCGCATCTTCTACAAGGCTGTCCGCGGCATGATCCCCCACAAGACCGCCC
GTGGTGCCGCCGCTATGGAGCGCCTGAAGGTTTTCGAGGGTGTTCCTCCC
CCCTACGACAAGAAGAAGCGCGTTGTCGTTCCCCAGGCTCTGCGTGTTCT
CCGCCTGCGCCCCGGCCGCAAGTACTGCACCGTTGGTCGTCTCAGCCACG
AGGTTGGCTGGAAGTACCAGGACGTTGTTGCCAGTCAAGTACCACGCCTA
CCTTCGCAAGATGACTCGTTTCAACCCCACCCGCGGAGGTCGTCATTGAC
GGCAAGGGACACCTCTTGGGTCGCCTGGCCAGCACTGTTGCTAAGCAGCT
GCTCAACGGTCAGAAGATTGTCGTCGTGAGATGTGAAGCCCTCAACATCT
CCGGCGAGTTCTTCCGTGCGAAGCATGTCCGCCATCGAGCCAGTC
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0015934large ribosomal subunit
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CRP46CBS51388_010973Aspergillus niger CBS 513.88gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_010973-T1CBS51388_010973-T1-proteinAspergillus niger CBS 513.88polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_010973-T1.cdsCBS51388_010973-T1.cdsAspergillus niger CBS 513.88CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_010973-T1.exon5CBS51388_010973-T1.exon5Aspergillus niger CBS 513.88exon
CBS51388_010973-T1.exon4CBS51388_010973-T1.exon4Aspergillus niger CBS 513.88exon
CBS51388_010973-T1.exon3CBS51388_010973-T1.exon3Aspergillus niger CBS 513.88exon
CBS51388_010973-T1.exon2CBS51388_010973-T1.exon2Aspergillus niger CBS 513.88exon
CBS51388_010973-T1.exon1CBS51388_010973-T1.exon1Aspergillus niger CBS 513.88exon


Properties
Property NameValue
DBxrefInterPro:IPR023563
DBxrefInterPro:IPR005755
DBxrefInterPro:IPR036899
DBxrefInterPro:IPR005822
DBxrefPFAM:PF00572
Product60S ribosomal protein L16
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger CBS 513.88 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
An18supercontigAn18:868936..870062 -
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