You are here

Home

CAN33_12515-T1, CAN33_12515-T1 (mRNA) Aspergillus niger FDAARGOS_311

Overview
NameCAN33_12515-T1
Unique NameCAN33_12515-T1
TypemRNA
OrganismAspergillus niger FDAARGOS_311
Sequences
The following sequences are available for this feature:

mRNA from alignment at NKJJ01000010.1:212973..213756+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>CAN33_12515-T1 ID=CAN33_12515-T1|Name=CAN33_12515-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=784bp|location=Sequence derived from alignment at NKJJ01000010.1:212973..213756+ (Aspergillus niger FDAARGOS_311)
ATGGATCTTCCCCCACTCTCACAAGAGCAACTGACCGCCGTCGTTGCCTC
TGCTAAAACGCCGACGGAGCTCTACGAAACACTATCAGACTATGAAAGCC
AGGCTTGTCTGCTCTCCATGCAAAAGGGCAAACATGCAGAACTACTAAGT
CTTTACTACTCTACATACTTCTTCTCCAACCTTCTCATAGACAAAACGTA
AGCTATTCCCCCGGCTATCCCCACAAGTTGGCAAATCGCTAATCCGCAAG
TTATGCAGCATCGAAGCTCGCCTAACGACACAACGCATGCCACAAGAATT
ATTACAAAATGACTCGTCGCTACAGAATTGTTTGACGCTTCTCCGAGCCG
TTTGGCAACGGAAATATGAGCAAGTCTATAAGATCCTGCGAGAACTGCCG
TGGCCAGAAGCACTCCAACCCATAGTCCAAAGTTATGAATGTAAGGCGAA
CCATTCTCTCGAATATGCCTTGCCTTTTGCTACGTCATTCACTTGCTGAC
TCTATTTAGCTCATTTCCAGGAAAAGACGTTAAAGGAAGTCAGCAGAGCC
TATGAGGCGATAAGGCCAACAGCCGCTGCAACCTATCTCGGCCTTGATCC
TGCCGCCGCACAACAGGGTGATCCGGCCATCATGCAAAAGTTCATAGCGT
ATGGATGGACGTGGGATCAGGAGAAAGGGTTGTTGCACCCGAAACCGATC
GTTGATGAAGTCCCTCAGAAAGATGTTCGACTGTACAATGAACTGAGTGA
GGTCATGGCGCTGATCGGAAATCGCCGGAGTTAA
back to top

Coding sequence (CDS) from alignment at NKJJ01000010.1:212973..213756+

>CAN33_12515-T1 ID=CAN33_12515-T1|Name=CAN33_12515-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=1962bp|location=Sequence derived from alignment at NKJJ01000010.1:212973..213756+ (Aspergillus niger FDAARGOS_311)
ATGGATCTTCCCCCACTCTCACAAGAGCAACTGACCGCCGTCGTTGCCTC
TGCTAAAACGCCGACGGAGCTCTACGAAACACTATCAGACTATGAAAGCC
AGGCTTGTCTGCTCTCCATGCAAAAGGGCAAACATGCAGAACTACTAAGT
CTTTACTACTCTACATACTTCTTCTCCAACCTTCTCATAGACAAAACCAT
CGAAGCTCGCCTAACGACACAACGCATGCCACAAGAATTATTACAAAATG
ACTCGTCGCTACAGAATTGTTTGACGCTTCTCCGAGCCGTTTGGCAACGG
AAATATGAGCAAGTCTATAAGATCCTGCGAGAACTGCCGTGGCCAGAAGC
ACTCCAACCCATAGTCCAAAGTTATGAATCTCATTTCCAGGAAAAGACGT
TAAAGGAAGTCAGCAGAGCCTATGAGGCGATAAGGCCAACAGCCGCTGCA
ACCTATCTCGGCCTTGATCCTGCCGCCGCACAACAGGGTGATCCGGCCAT
CATGCAAAAGTTCATAGCGTATGGATGGACGTGGGATCAGGAGAAAGGGT
TGTTGCACCCGAAACCGATCGTTGATGAAGTCCCTCAGAAAGATGTTCGA
CTGTACAATGAACTGAGTGAGGTCATGGCGCTGATCGGAAATCGCCGGAG
TTAAATGGATCTTCCCCCACTCTCACAAGAGCAACTGACCGCCGTCGTTG
CCTCTGCTAAAACGCCGACGGAGCTCTACGAAACACTATCAGACTATGAA
AGCCAGGCTTGTCTGCTCTCCATGCAAAAGGGCAAACATGCAGAACTACT
AAGTCTTTACTACTCTACATACTTCTTCTCCAACCTTCTCATAGACAAAA
CCATCGAAGCTCGCCTAACGACACAACGCATGCCACAAGAATTATTACAA
AATGACTCGTCGCTACAGAATTGTTTGACGCTTCTCCGAGCCGTTTGGCA
ACGGAAATATGAGCAAGTCTATAAGATCCTGCGAGAACTGCCGTGGCCAG
AAGCACTCCAACCCATAGTCCAAAGTTATGAATCTCATTTCCAGGAAAAG
ACGTTAAAGGAAGTCAGCAGAGCCTATGAGGCGATAAGGCCAACAGCCGC
TGCAACCTATCTCGGCCTTGATCCTGCCGCCGCACAACAGGGTGATCCGG
CCATCATGCAAAAGTTCATAGCGTATGGATGGACGTGGGATCAGGAGAAA
GGGTTGTTGCACCCGAAACCGATCGTTGATGAAGTCCCTCAGAAAGATGT
TCGACTGTACAATGAACTGAGTGAGGTCATGGCGCTGATCGGAAATCGCC
GGAGTTAAATGGATCTTCCCCCACTCTCACAAGAGCAACTGACCGCCGTC
GTTGCCTCTGCTAAAACGCCGACGGAGCTCTACGAAACACTATCAGACTA
TGAAAGCCAGGCTTGTCTGCTCTCCATGCAAAAGGGCAAACATGCAGAAC
TACTAAGTCTTTACTACTCTACATACTTCTTCTCCAACCTTCTCATAGAC
AAAACCATCGAAGCTCGCCTAACGACACAACGCATGCCACAAGAATTATT
ACAAAATGACTCGTCGCTACAGAATTGTTTGACGCTTCTCCGAGCCGTTT
GGCAACGGAAATATGAGCAAGTCTATAAGATCCTGCGAGAACTGCCGTGG
CCAGAAGCACTCCAACCCATAGTCCAAAGTTATGAATCTCATTTCCAGGA
AAAGACGTTAAAGGAAGTCAGCAGAGCCTATGAGGCGATAAGGCCAACAG
CCGCTGCAACCTATCTCGGCCTTGATCCTGCCGCCGCACAACAGGGTGAT
CCGGCCATCATGCAAAAGTTCATAGCGTATGGATGGACGTGGGATCAGGA
GAAAGGGTTGTTGCACCCGAAACCGATCGTTGATGAAGTCCCTCAGAAAG
ATGTTCGACTGTACAATGAACTGAGTGAGGTCATGGCGCTGATCGGAAAT
CGCCGGAGTTAA
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CAN33_12515CAN33_12515Aspergillus niger FDAARGOS_311gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_12515-T1.exon1CAN33_12515-T1.exon1Aspergillus niger FDAARGOS_311exon
CAN33_12515-T1.exon2CAN33_12515-T1.exon2Aspergillus niger FDAARGOS_311exon
CAN33_12515-T1.exon3CAN33_12515-T1.exon3Aspergillus niger FDAARGOS_311exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_12515-T1.cdsCAN33_12515-T1.cdsAspergillus niger FDAARGOS_311CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CAN33_12515-T1CAN33_12515-T1-proteinAspergillus niger FDAARGOS_311polypeptide


Properties
Property NameValue
DBxrefInterPro:IPR033464
DBxrefPFAM:PF10075
ProductCOP9 signalosome subunit CSN8 family protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger FDAARGOS_311 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NKJJ01000010.1supercontigNKJJ01000010.1:212973..213756 +
Powered by Drupal