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CAN33_12930-T1, CAN33_12930-T1 (mRNA) Aspergillus niger FDAARGOS_311

Overview
NameCAN33_12930-T1
Unique NameCAN33_12930-T1
TypemRNA
OrganismAspergillus niger FDAARGOS_311
Sequences
The following sequences are available for this feature:

mRNA from alignment at NKJJ01000010.1:476584..477291-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>CAN33_12930-T1 ID=CAN33_12930-T1|Name=CAN33_12930-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=708bp|location=Sequence derived from alignment at NKJJ01000010.1:476584..477291- (Aspergillus niger FDAARGOS_311)
ATGTTTTTCCTTAAAGAAGAGGTCAAGGTCATCACCTTGCACCCGTCCTA
CTTCGGGCCCAACATGCGCGAGTATCTCATCAACCGGTTAAACGAGGAGG
AGGAAGGACGTTGTACGGGCGACCACTTCGTAATCTGTGTGATGGACATG
GTTGATATTGGCGAAGGACGGGTGCTCCCAGGCAGCGGACAGGCAGAATA
TACTATCAAGTATCGGGCAATCATCTGGAAGCCCTTCCGCGGAGAGACCG
TACGTCTTGGAGTTGCATTGAACAGGGCTGCATTTGATTCTGACCATAGC
CTTGTAGGTCGATGCGATTGTTACGTCTGTCAAGCCCACCGGTATATTTA
CTTTGGCCGGTCCATTGTCTGTTTTTATTGCACGGAAAGTATGTCAACGA
CCGAGTTTGAGTTGGATCACTTAGCCTTATCGGTTGCTAACGAGTTGGCA
AGAACATTCCTTCCGACATCAAGTGGGAACCAAACACAGTACCGCCGCAA
TACACGGACCATGCGGACCAAGTCATCGAGAAGGGGACCAGTTTACGGCT
TAAGATTCTTGGTGTGAAGCCCGACGTTGCGGCGATCAATGCCATTGGAA
CGATCAAGGAAGATTATCTCGGGTGAGTCTCCCAAACCTTTCTGGGAATT
GGTGTCCAACACAGATGTACTGACATTCTATTTTTCTTTCCTTTCCAGAC
CATTGTAA
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Coding sequence (CDS) from alignment at NKJJ01000010.1:476584..477291-

>CAN33_12930-T1 ID=CAN33_12930-T1|Name=CAN33_12930-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=2040bp|location=Sequence derived from alignment at NKJJ01000010.1:476584..477291- (Aspergillus niger FDAARGOS_311)
ACCATTGTAAAACATTCCTTCCGACATCAAGTGGGAACCAAACACAGTAC
CGCCGCAATACACGGACCATGCGGACCAAGTCATCGAGAAGGGGACCAGT
TTACGGCTTAAGATTCTTGGTGTGAAGCCCGACGTTGCGGCGATCAATGC
CATTGGAACGATCAAGGAAGATTATCTCGGGTCGATGCGATTGTTACGTC
TGTCAAGCCCACCGGTATATTTACTTTGGCCGGTCCATTGTCTGTTTTTA
TTGCACGGAAAATGTTTTTCCTTAAAGAAGAGGTCAAGGTCATCACCTTG
CACCCGTCCTACTTCGGGCCCAACATGCGCGAGTATCTCATCAACCGGTT
AAACGAGGAGGAGGAAGGACGTTGTACGGGCGACCACTTCGTAATCTGTG
TGATGGACATGGTTGATATTGGCGAAGGACGGGTGCTCCCAGGCAGCGGA
CAGGCAGAATATACTATCAAGTATCGGGCAATCATCTGGAAGCCCTTCCG
CGGAGAGACCACCATTGTAAAACATTCCTTCCGACATCAAGTGGGAACCA
AACACAGTACCGCCGCAATACACGGACCATGCGGACCAAGTCATCGAGAA
GGGGACCAGTTTACGGCTTAAGATTCTTGGTGTGAAGCCCGACGTTGCGG
CGATCAATGCCATTGGAACGATCAAGGAAGATTATCTCGGGTCGATGCGA
TTGTTACGTCTGTCAAGCCCACCGGTATATTTACTTTGGCCGGTCCATTG
TCTGTTTTTATTGCACGGAAAATGTTTTTCCTTAAAGAAGAGGTCAAGGT
CATCACCTTGCACCCGTCCTACTTCGGGCCCAACATGCGCGAGTATCTCA
TCAACCGGTTAAACGAGGAGGAGGAAGGACGTTGTACGGGCGACCACTTC
GTAATCTGTGTGATGGACATGGTTGATATTGGCGAAGGACGGGTGCTCCC
AGGCAGCGGACAGGCAGAATATACTATCAAGTATCGGGCAATCATCTGGA
AGCCCTTCCGCGGAGAGACCACCATTGTAAAACATTCCTTCCGACATCAA
GTGGGAACCAAACACAGTACCGCCGCAATACACGGACCATGCGGACCAAG
TCATCGAGAAGGGGACCAGTTTACGGCTTAAGATTCTTGGTGTGAAGCCC
GACGTTGCGGCGATCAATGCCATTGGAACGATCAAGGAAGATTATCTCGG
GTCGATGCGATTGTTACGTCTGTCAAGCCCACCGGTATATTTACTTTGGC
CGGTCCATTGTCTGTTTTTATTGCACGGAAAATGTTTTTCCTTAAAGAAG
AGGTCAAGGTCATCACCTTGCACCCGTCCTACTTCGGGCCCAACATGCGC
GAGTATCTCATCAACCGGTTAAACGAGGAGGAGGAAGGACGTTGTACGGG
CGACCACTTCGTAATCTGTGTGATGGACATGGTTGATATTGGCGAAGGAC
GGGTGCTCCCAGGCAGCGGACAGGCAGAATATACTATCAAGTATCGGGCA
ATCATCTGGAAGCCCTTCCGCGGAGAGACCACCATTGTAAAACATTCCTT
CCGACATCAAGTGGGAACCAAACACAGTACCGCCGCAATACACGGACCAT
GCGGACCAAGTCATCGAGAAGGGGACCAGTTTACGGCTTAAGATTCTTGG
TGTGAAGCCCGACGTTGCGGCGATCAATGCCATTGGAACGATCAAGGAAG
ATTATCTCGGGTCGATGCGATTGTTACGTCTGTCAAGCCCACCGGTATAT
TTACTTTGGCCGGTCCATTGTCTGTTTTTATTGCACGGAAAATGTTTTTC
CTTAAAGAAGAGGTCAAGGTCATCACCTTGCACCCGTCCTACTTCGGGCC
CAACATGCGCGAGTATCTCATCAACCGGTTAAACGAGGAGGAGGAAGGAC
GTTGTACGGGCGACCACTTCGTAATCTGTGTGATGGACATGGTTGATATT
GGCGAAGGACGGGTGCTCCCAGGCAGCGGACAGGCAGAATATACTATCAA
GTATCGGGCAATCATCTGGAAGCCCTTCCGCGGAGAGACC
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003899DNA-directed 5'-3' RNA polymerase activity
Vocabulary: Biological Process
TermDefinition
GO:0006351transcription, DNA-templated
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CAN33_12930CAN33_12930Aspergillus niger FDAARGOS_311gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CAN33_12930-T1CAN33_12930-T1-proteinAspergillus niger FDAARGOS_311polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_12930-T1.cdsCAN33_12930-T1.cdsAspergillus niger FDAARGOS_311CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_12930-T1.exon4CAN33_12930-T1.exon4Aspergillus niger FDAARGOS_311exon
CAN33_12930-T1.exon3CAN33_12930-T1.exon3Aspergillus niger FDAARGOS_311exon
CAN33_12930-T1.exon2CAN33_12930-T1.exon2Aspergillus niger FDAARGOS_311exon
CAN33_12930-T1.exon1CAN33_12930-T1.exon1Aspergillus niger FDAARGOS_311exon


Properties
Property NameValue
NoteBUSCO:EOG09264RW6
DBxrefInterPro:IPR012340
DBxrefInterPro:IPR003029
DBxrefInterPro:IPR005576
DBxrefInterPro:IPR036898
DBxrefPFAM:PF03876
DBxrefPFAM:PF00575
ProductSHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 family protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger FDAARGOS_311 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NKJJ01000010.1supercontigNKJJ01000010.1:476584..477291 -
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