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CAN33_14355-T1, CAN33_14355-T1 (mRNA) Aspergillus niger FDAARGOS_311

Overview
NameCAN33_14355-T1
Unique NameCAN33_14355-T1
TypemRNA
OrganismAspergillus niger FDAARGOS_311
Sequences
The following sequences are available for this feature:

mRNA from alignment at NKJJ01000010.1:1411695..1412953-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>CAN33_14355-T1 ID=CAN33_14355-T1|Name=CAN33_14355-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=1259bp|location=Sequence derived from alignment at NKJJ01000010.1:1411695..1412953- (Aspergillus niger FDAARGOS_311)
ATGTCAGCCGCTACCGATAAGGCACGCTTCTTTCTGGAGAAGTCGGTCCC
TGAGCTCAAGGAGTTTGAGCGGAAGAAAATCTTCTCCAAGGTAAATTGGT
GCCCATGATCATTATCTACCCACATCGATGCGCTTAGGAAACTGACATGC
CGTTTGATCTGCCTGCAGGAGGAAATTACAGCCATCATCAAGAAACGGTC
CGATTTTGAGCACAAGCTGAATGCACGTGGCGCCCTGCCTGTTGACTTCG
TCCGATATGCGCAATACGAGATGAACCTAGACACCCTGCGCCGGAAGAGG
GTGAAGCGGTTGGGAATCAGATCGGCAGGATACACTGGGCAAAGGCGCAT
CTTCTTCATCCTTGACCGCGCAACTCGCAAGTTTCATGGTGATGTGGGCT
TGTGGGTGCAGTACCTCGAATACGCGAAACAACAGAAAGCCTACAAAAAG
GTCTCGACCATCCTTACGGACGCCTTGCGGTTACATCCCGCCAACGTCGA
CTTGTGGCTATATGCTGCGCAGTACTCTGTGGATGAGCATGCGGATATGA
CACAATCTAGGGTTACATGCAGCGCGGTTTGCGCTTCTGCAAAAGCTCCA
AGAAGCTGTGGCTCCACTATGCCAAACTGGAATTGATATATATCGCCAAG
CTGGTTGCTCGACAGCGGATCTTGGGTCTCGATAAGCCGATCGAAGCCCC
GAAGCCAGCGCAGGAGGACGATTTAGATGCCGACATGATTGCTATGCCCA
AGATCACTGGAGAAGATATCAACCCCGGCGCTGGAGAGGATGGCGGTGTG
GATCAAGTGGCTTTGGACAACCTTGCCAACACCCCAGCCCTGAGTGGTGC
TATCCCTCTCGCCATCTTCGATACGGCCATGAAGAACTTCGAAAATGACG
ACCGTTTCGGTCATGAGTTCTACGATATGGCGGTCGAGTTCGACGACCTG
CCCTGTCTGCACAAAATTCTCGGCCATGTGGTCGACGTGATGCAGCAGAC
CAAGCCAAACAGTCCTCATACGCAAATTTGCTACATCAAATTCCCCACCG
CTGGACTCCGGGTTACTTCACCCGAATTCCCACGTGCGTTTAGTGCGTCA
TTTGCCCGTCTCAAGGAGTACCGGAATAACCCCAACGTCGCCAAGGAGAT
CGTCAGCTGGCTACAGCCCCTTGAGAAGACAGAAGGCGTGGATGCCTCCC
TCCAAAAGGCGATTTCGGCCACTATCCGTAATGCGGAACGCACTGTACAG
GAAGCATAG
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Coding sequence (CDS) from alignment at NKJJ01000010.1:1411695..1412953-

>CAN33_14355-T1 ID=CAN33_14355-T1|Name=CAN33_14355-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=3447bp|location=Sequence derived from alignment at NKJJ01000010.1:1411695..1412953- (Aspergillus niger FDAARGOS_311)
GGTTACATGCAGCGCGGTTTGCGCTTCTGCAAAAGCTCCAAGAAGCTGTG
GCTCCACTATGCCAAACTGGAATTGATATATATCGCCAAGCTGGTTGCTC
GACAGCGGATCTTGGGTCTCGATAAGCCGATCGAAGCCCCGAAGCCAGCG
CAGGAGGACGATTTAGATGCCGACATGATTGCTATGCCCAAGATCACTGG
AGAAGATATCAACCCCGGCGCTGGAGAGGATGGCGGTGTGGATCAAGTGG
CTTTGGACAACCTTGCCAACACCCCAGCCCTGAGTGGTGCTATCCCTCTC
GCCATCTTCGATACGGCCATGAAGAACTTCGAAAATGACGACCGTTTCGG
TCATGAGTTCTACGATATGGCGGTCGAGTTCGACGACCTGCCCTGTCTGC
ACAAAATTCTCGGCCATGTGGTCGACGTGATGCAGCAGACCAAGCCAAAC
AGTCCTCATACGCAAATTTGCTACATCAAATTCCCCACCGCTGGACTCCG
GGTTACTTCACCCGAATTCCCACGTGCGTTTAGTGCGTCATTTGCCCGTC
TCAAGGAGTACCGGAATAACCCCAACGTCGCCAAGGAGATCGTCAGCTGG
CTACAGCCCCTTGAGAAGACAGAAGGCGTGGATGCCTCCCTCCAAAAGGC
GATTTCGGCCACTATCCGTAATGCGGAACGCACTGTACAGGAAGCATAGG
AGGAAATTACAGCCATCATCAAGAAACGGTCCGATTTTGAGCACAAGCTG
AATGCACGTGGCGCCCTGCCTGTTGACTTCGTCCGATATGCGCAATACGA
GATGAACCTAGACACCCTGCGCCGGAAGAGGGTGAAGCGGTTGGGAATCA
GATCGGCAGGATACACTGGGCAAAGGCGCATCTTCTTCATCCTTGACCGC
GCAACTCGCAAGTTTCATGGTGATGTGGGCTTGTGGGTGCAGTACCTCGA
ATACGCGAAACAACAGAAAGCCTACAAAAAGGTCTCGACCATCCTTACGG
ACGCCTTGCGGTTACATCCCGCCAACGTCGACTTGTGGCTATATGCTGCG
CAGTACTCTATGTCAGCCGCTACCGATAAGGCACGCTTCTTTCTGGAGAA
GTCGGTCCCTGAGCTCAAGGAGTTTGAGCGGAAGAAAATCTTCTCCAAGG
GTTACATGCAGCGCGGTTTGCGCTTCTGCAAAAGCTCCAAGAAGCTGTGG
CTCCACTATGCCAAACTGGAATTGATATATATCGCCAAGCTGGTTGCTCG
ACAGCGGATCTTGGGTCTCGATAAGCCGATCGAAGCCCCGAAGCCAGCGC
AGGAGGACGATTTAGATGCCGACATGATTGCTATGCCCAAGATCACTGGA
GAAGATATCAACCCCGGCGCTGGAGAGGATGGCGGTGTGGATCAAGTGGC
TTTGGACAACCTTGCCAACACCCCAGCCCTGAGTGGTGCTATCCCTCTCG
CCATCTTCGATACGGCCATGAAGAACTTCGAAAATGACGACCGTTTCGGT
CATGAGTTCTACGATATGGCGGTCGAGTTCGACGACCTGCCCTGTCTGCA
CAAAATTCTCGGCCATGTGGTCGACGTGATGCAGCAGACCAAGCCAAACA
GTCCTCATACGCAAATTTGCTACATCAAATTCCCCACCGCTGGACTCCGG
GTTACTTCACCCGAATTCCCACGTGCGTTTAGTGCGTCATTTGCCCGTCT
CAAGGAGTACCGGAATAACCCCAACGTCGCCAAGGAGATCGTCAGCTGGC
TACAGCCCCTTGAGAAGACAGAAGGCGTGGATGCCTCCCTCCAAAAGGCG
ATTTCGGCCACTATCCGTAATGCGGAACGCACTGTACAGGAAGCATAGGA
GGAAATTACAGCCATCATCAAGAAACGGTCCGATTTTGAGCACAAGCTGA
ATGCACGTGGCGCCCTGCCTGTTGACTTCGTCCGATATGCGCAATACGAG
ATGAACCTAGACACCCTGCGCCGGAAGAGGGTGAAGCGGTTGGGAATCAG
ATCGGCAGGATACACTGGGCAAAGGCGCATCTTCTTCATCCTTGACCGCG
CAACTCGCAAGTTTCATGGTGATGTGGGCTTGTGGGTGCAGTACCTCGAA
TACGCGAAACAACAGAAAGCCTACAAAAAGGTCTCGACCATCCTTACGGA
CGCCTTGCGGTTACATCCCGCCAACGTCGACTTGTGGCTATATGCTGCGC
AGTACTCTATGTCAGCCGCTACCGATAAGGCACGCTTCTTTCTGGAGAAG
TCGGTCCCTGAGCTCAAGGAGTTTGAGCGGAAGAAAATCTTCTCCAAGGG
TTACATGCAGCGCGGTTTGCGCTTCTGCAAAAGCTCCAAGAAGCTGTGGC
TCCACTATGCCAAACTGGAATTGATATATATCGCCAAGCTGGTTGCTCGA
CAGCGGATCTTGGGTCTCGATAAGCCGATCGAAGCCCCGAAGCCAGCGCA
GGAGGACGATTTAGATGCCGACATGATTGCTATGCCCAAGATCACTGGAG
AAGATATCAACCCCGGCGCTGGAGAGGATGGCGGTGTGGATCAAGTGGCT
TTGGACAACCTTGCCAACACCCCAGCCCTGAGTGGTGCTATCCCTCTCGC
CATCTTCGATACGGCCATGAAGAACTTCGAAAATGACGACCGTTTCGGTC
ATGAGTTCTACGATATGGCGGTCGAGTTCGACGACCTGCCCTGTCTGCAC
AAAATTCTCGGCCATGTGGTCGACGTGATGCAGCAGACCAAGCCAAACAG
TCCTCATACGCAAATTTGCTACATCAAATTCCCCACCGCTGGACTCCGGG
TTACTTCACCCGAATTCCCACGTGCGTTTAGTGCGTCATTTGCCCGTCTC
AAGGAGTACCGGAATAACCCCAACGTCGCCAAGGAGATCGTCAGCTGGCT
ACAGCCCCTTGAGAAGACAGAAGGCGTGGATGCCTCCCTCCAAAAGGCGA
TTTCGGCCACTATCCGTAATGCGGAACGCACTGTACAGGAAGCATAGGAG
GAAATTACAGCCATCATCAAGAAACGGTCCGATTTTGAGCACAAGCTGAA
TGCACGTGGCGCCCTGCCTGTTGACTTCGTCCGATATGCGCAATACGAGA
TGAACCTAGACACCCTGCGCCGGAAGAGGGTGAAGCGGTTGGGAATCAGA
TCGGCAGGATACACTGGGCAAAGGCGCATCTTCTTCATCCTTGACCGCGC
AACTCGCAAGTTTCATGGTGATGTGGGCTTGTGGGTGCAGTACCTCGAAT
ACGCGAAACAACAGAAAGCCTACAAAAAGGTCTCGACCATCCTTACGGAC
GCCTTGCGGTTACATCCCGCCAACGTCGACTTGTGGCTATATGCTGCGCA
GTACTCTATGTCAGCCGCTACCGATAAGGCACGCTTCTTTCTGGAGAAGT
CGGTCCCTGAGCTCAAGGAGTTTGAGCGGAAGAAAATCTTCTCCAAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0000462maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
Vocabulary: Molecular Function
TermDefinition
GO:0030515snoRNA binding
GO:0005515protein binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CAN33_14355CAN33_14355Aspergillus niger FDAARGOS_311gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CAN33_14355-T1CAN33_14355-T1-proteinAspergillus niger FDAARGOS_311polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_14355-T1.cdsCAN33_14355-T1.cdsAspergillus niger FDAARGOS_311CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_14355-T1.exon3CAN33_14355-T1.exon3Aspergillus niger FDAARGOS_311exon
CAN33_14355-T1.exon2CAN33_14355-T1.exon2Aspergillus niger FDAARGOS_311exon
CAN33_14355-T1.exon1CAN33_14355-T1.exon1Aspergillus niger FDAARGOS_311exon


Properties
Property NameValue
DBxrefInterPro:IPR013949
DBxrefInterPro:IPR011990
DBxrefPFAM:PF08640
ProductU3 small nucleolar RNA-associated protein 6 family protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger FDAARGOS_311 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NKJJ01000010.1supercontigNKJJ01000010.1:1411695..1412953 -
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