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CAN33_18445-T1, CAN33_18445-T1 (mRNA) Aspergillus niger FDAARGOS_311

Overview
NameCAN33_18445-T1
Unique NameCAN33_18445-T1
TypemRNA
OrganismAspergillus niger FDAARGOS_311
Sequences
The following sequences are available for this feature:

mRNA from alignment at NKJJ01000011.1:1404864..1406341-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>CAN33_18445-T1 ID=CAN33_18445-T1|Name=CAN33_18445-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=1478bp|location=Sequence derived from alignment at NKJJ01000011.1:1404864..1406341- (Aspergillus niger FDAARGOS_311)
ATGGCTTCCAATACAATTCCTAGTCCTGCTTCGGAGACTGTTGCTCCTGG
CAAATCCGACTTTTCTCAGAAAAACAATGCCTCCCCAGCTCGTCGTTCGC
GGCCTCCAAGGCCCAATTACCGACACATCCATCGCTTCCCCTTCCCGGTC
GAGGTGCATCCTCTCCCTCCTCTCATCCCCCATAACCCTCTCTCGCTCGT
CAGTGTGCTGCTGTCCTACCTGACGTACTTTATTTCTCCCCCTCATCAGG
AAGTCTACTCCGCCTACTTTGACTCGGCCACATCCTCGGTTCATGTCACA
GACCCTAAGGCTATAAAAGCCCTCTGGGAGATGGGTTTCTTTGGTAAGGG
AACCCTGAGTCGAAGTGAGCCGAGCTGGCTTGAGCGTGAGAAGAAGAGAC
GAGGATTACTTGGGGGATGACTAGCGAAGAGGTCACACGACAGCGGCGGA
CGGAACGTCGCGAGTTGAAACTGGAGCGCGCGAGGATGGAAAAGCTTGCC
ATTGAGGAGAGACTCAAGGCCGAAGCGGCTGCCAGGGAAGGCACTGCGAC
GCCAAACGAACAGTCATCCCTCTCACCCACTCCGAATGGTGTCTCTGAAG
GCACAGTACCAATTACGGAGAAGTTCTCCCTGAGAAAAGCACGGGAAGCC
AGGGAAGCCAAGCTCCTTGAGTCACAACGTCCAGTATCACAAGACGGCAA
TACACGCACCCCTAACTCCGCCGGAAAGCGGTCACCTAGTGGCAGCAAAA
CTGTGCGGTTTTCTCCGGTTGTTCAAGCCAAGGAGTTCGCTTCTGATTCG
GCTATCTTGAGCTTGCCAGAAATGTCTGCAGATAGAAATACGGACGGAGG
TAAGGCGAATGATGAGCCAGAATTAAGTAATGAAGAGCACCTTCAATTAT
CTAACGAAGAGGCCTTCTTCCTTGCATATGGGCTGGGAGTCTTGCGTGTG
CGCGATGATACTCGCACATCCGAGATTCCTACATCTTCCCTGTTGCCATT
ATTATGTCAACACTCTTACTTCCCTCCTGGAGCTCCGTCAGCGGATCCCA
CGCCGGACGACCCATTCATGATATCCTATGTTGTGTACCACCATTTCCGG
TCTTTGGGGTGGGTTGTGCGCTCCGGAGTGAAATTCGGTGTGGACTATAT
CCTCTACAACCGTGGGCCGGTCTTCTCACATGCTGAGTTTGCTGTCGTGG
TTGTCCCGTCCTATGGTCATGGCTACTGGTCTGAAACGGCCGAGCGCAAG
GCCCAGTGTGAGGAGAAGATGGCGCGCAGTTGGTGGTGGCTGCATTGTGT
CAATCGAGTCCAGGCCCAGGTGAAGAAGAGCTTGGTAGTATGCTATGTGG
AAGTGCCTCCGCCAACGTCCTACGAGCTTGACACTCCCTCGGAAGAGGAT
ATTGGTGCAATGTTGGCTCGTTATCAAGTCCGGGAGATGGTTATTCGAAG
ATGGGTCCCCAATCGGACTCGGGACTAA
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Coding sequence (CDS) from alignment at NKJJ01000011.1:1404864..1406341-

>CAN33_18445-T1 ID=CAN33_18445-T1|Name=CAN33_18445-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=2856bp|location=Sequence derived from alignment at NKJJ01000011.1:1404864..1406341- (Aspergillus niger FDAARGOS_311)
AAGAGACGAGGATTACTTGGGGGATGACTAGCGAAGAGGTCACACGACAG
CGGCGGACGGAACGTCGCGAGTTGAAACTGGAGCGCGCGAGGATGGAAAA
GCTTGCCATTGAGGAGAGACTCAAGGCCGAAGCGGCTGCCAGGGAAGGCA
CTGCGACGCCAAACGAACAGTCATCCCTCTCACCCACTCCGAATGGTGTC
TCTGAAGGCACAGTACCAATTACGGAGAAGTTCTCCCTGAGAAAAGCACG
GGAAGCCAGGGAAGCCAAGCTCCTTGAGTCACAACGTCCAGTATCACAAG
ACGGCAATACACGCACCCCTAACTCCGCCGGAAAGCGGTCACCTAGTGGC
AGCAAAACTGTGCGGTTTTCTCCGGTTGTTCAAGCCAAGGAGTTCGCTTC
TGATTCGGCTATCTTGAGCTTGCCAGAAATGTCTGCAGATAGAAATACGG
ACGGAGGTAAGGCGAATGATGAGCCAGAATTAAGTAATGAAGAGCACCTT
CAATTATCTAACGAAGAGGCCTTCTTCCTTGCATATGGGCTGGGAGTCTT
GCGTGTGCGCGATGATACTCGCACATCCGAGATTCCTACATCTTCCCTGT
TGCCATTATTATGTCAACACTCTTACTTCCCTCCTGGAGCTCCGTCAGCG
GATCCCACGCCGGACGACCCATTCATGATATCCTATGTTGTGTACCACCA
TTTCCGGTCTTTGGGGTGGGTTGTGCGCTCCGGAGTGAAATTCGGTGTGG
ACTATATCCTCTACAACCGTGGGCCGGTCTTCTCACATGCTGAGTTTGCT
GTCGTGGTTGTCCCGTCCTATGGTCATGGCTACTGGTCTGAAACGGCCGA
GCGCAAGGCCCAGTGTGAGGAGAAGATGGCGCGCAGTTGGTGGTGGCTGC
ATTGTGTCAATCGAGTCCAGGCCCAGGTGAAGAAGAGCTTGGTAGTATGC
TATGTGGAAGTGCCTCCGCCAACGTCCTACGAGCTTGACACTCCCTCGGA
AGAGGATATTGGTGCAATGTTGGCTCGTTATCAAGTCCGGGAGATGGTTA
TTCGAAGATGGGTCCCCAATCGGACTCGGGACTAAATGGCTTCCAATACA
ATTCCTAGTCCTGCTTCGGAGACTGTTGCTCCTGGCAAATCCGACTTTTC
TCAGAAAAACAATGCCTCCCCAGCTCGTCGTTCGCGGCCTCCAAGGCCCA
ATTACCGACACATCCATCGCTTCCCCTTCCCGGTCGAGGTGCATCCTCTC
CCTCCTCTCATCCCCCATAACCCTCTCTCGCTCGTCAGTGTGCTGCTGTC
CTACCTGACGTACTTTATTTCTCCCCCTCATCAGGAAGTCTACTCCGCCT
ACTTTGACTCGGCCACATCCTCGGTTCATGTCACAGACCCTAAGGCTATA
AAAGCCCTCTGGGAGATGGGTTTCTTTGAAGAGACGAGGATTACTTGGGG
GATGACTAGCGAAGAGGTCACACGACAGCGGCGGACGGAACGTCGCGAGT
TGAAACTGGAGCGCGCGAGGATGGAAAAGCTTGCCATTGAGGAGAGACTC
AAGGCCGAAGCGGCTGCCAGGGAAGGCACTGCGACGCCAAACGAACAGTC
ATCCCTCTCACCCACTCCGAATGGTGTCTCTGAAGGCACAGTACCAATTA
CGGAGAAGTTCTCCCTGAGAAAAGCACGGGAAGCCAGGGAAGCCAAGCTC
CTTGAGTCACAACGTCCAGTATCACAAGACGGCAATACACGCACCCCTAA
CTCCGCCGGAAAGCGGTCACCTAGTGGCAGCAAAACTGTGCGGTTTTCTC
CGGTTGTTCAAGCCAAGGAGTTCGCTTCTGATTCGGCTATCTTGAGCTTG
CCAGAAATGTCTGCAGATAGAAATACGGACGGAGGTAAGGCGAATGATGA
GCCAGAATTAAGTAATGAAGAGCACCTTCAATTATCTAACGAAGAGGCCT
TCTTCCTTGCATATGGGCTGGGAGTCTTGCGTGTGCGCGATGATACTCGC
ACATCCGAGATTCCTACATCTTCCCTGTTGCCATTATTATGTCAACACTC
TTACTTCCCTCCTGGAGCTCCGTCAGCGGATCCCACGCCGGACGACCCAT
TCATGATATCCTATGTTGTGTACCACCATTTCCGGTCTTTGGGGTGGGTT
GTGCGCTCCGGAGTGAAATTCGGTGTGGACTATATCCTCTACAACCGTGG
GCCGGTCTTCTCACATGCTGAGTTTGCTGTCGTGGTTGTCCCGTCCTATG
GTCATGGCTACTGGTCTGAAACGGCCGAGCGCAAGGCCCAGTGTGAGGAG
AAGATGGCGCGCAGTTGGTGGTGGCTGCATTGTGTCAATCGAGTCCAGGC
CCAGGTGAAGAAGAGCTTGGTAGTATGCTATGTGGAAGTGCCTCCGCCAA
CGTCCTACGAGCTTGACACTCCCTCGGAAGAGGATATTGGTGCAATGTTG
GCTCGTTATCAAGTCCGGGAGATGGTTATTCGAAGATGGGTCCCCAATCG
GACTCGGGACTAAATGGCTTCCAATACAATTCCTAGTCCTGCTTCGGAGA
CTGTTGCTCCTGGCAAATCCGACTTTTCTCAGAAAAACAATGCCTCCCCA
GCTCGTCGTTCGCGGCCTCCAAGGCCCAATTACCGACACATCCATCGCTT
CCCCTTCCCGGTCGAGGTGCATCCTCTCCCTCCTCTCATCCCCCATAACC
CTCTCTCGCTCGTCAGTGTGCTGCTGTCCTACCTGACGTACTTTATTTCT
CCCCCTCATCAGGAAGTCTACTCCGCCTACTTTGACTCGGCCACATCCTC
GGTTCATGTCACAGACCCTAAGGCTATAAAAGCCCTCTGGGAGATGGGTT
TCTTTG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0000214tRNA-intron endonuclease complex
Vocabulary: Molecular Function
TermDefinition
GO:0004518nuclease activity
GO:0003676nucleic acid binding
GO:0000213tRNA-intron endonuclease activity
Vocabulary: Biological Process
TermDefinition
GO:0006388tRNA splicing, via endonucleolytic cleavage and ligation
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CAN33_18445CAN33_18445Aspergillus niger FDAARGOS_311gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CAN33_18445-T1CAN33_18445-T1-proteinAspergillus niger FDAARGOS_311polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_18445-T1.cdsCAN33_18445-T1.cdsAspergillus niger FDAARGOS_311CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_18445-T1.exon2CAN33_18445-T1.exon2Aspergillus niger FDAARGOS_311exon
CAN33_18445-T1.exon1CAN33_18445-T1.exon1Aspergillus niger FDAARGOS_311exon


Properties
Property NameValue
NoteBUSCO:EOG09262WXK
DBxrefInterPro:IPR036167
DBxrefInterPro:IPR011856
DBxrefInterPro:IPR016589
DBxrefInterPro:IPR006677
DBxrefPFAM:PF01974
ProducttRNA intron endonuclease catalytic C-terminal domain family protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger FDAARGOS_311 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NKJJ01000011.1supercontigNKJJ01000011.1:1404864..1406341 -
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