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CAN33_19260-T1, CAN33_19260-T1 (mRNA) Aspergillus niger FDAARGOS_311

Overview
NameCAN33_19260-T1
Unique NameCAN33_19260-T1
TypemRNA
OrganismAspergillus niger FDAARGOS_311
Sequences
The following sequences are available for this feature:

mRNA from alignment at NKJJ01000011.1:1987151..1988762-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>CAN33_19260-T1 ID=CAN33_19260-T1|Name=CAN33_19260-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=1612bp|location=Sequence derived from alignment at NKJJ01000011.1:1987151..1988762- (Aspergillus niger FDAARGOS_311)
ATGGCCTCCACTGCTACGTGAGACTCCCTTTGAGATTCCCCTGCGGCTGA
TCGCTCGAGGTGCCTGTGAGGTTACAGATATAGTCGTCCTTTCTCGCTGG
AGATGCTGCGACCAGAAACGGTTGCTGAGCACCAGCTCGATTTTTCCCGC
GACCGCGCTTCGCCCTTGAATCGCCTAAGACTTTGTTAGGAATATGAGGA
TTGGGTGCGGCACGGTCTGGGGTATTGAGGTTGAAGGCACTGTGAACCTT
CTCCTTGAAAACAATTGTTGTGAGCTATCGTCGTGTACCATTGCGCCGTG
ATAGGGCATGATACGGGCGAAAAGCGTCAACACCACTTCCCGAGCGTTAT
GCTTGGGGTTTTGTCGGATGAGAATTATCATACTTGGTCGTAGTCGCCGC
GGGCTTGCGAACGTTGCTGCTGAGAATGCGTGACTGGTAGTGAGCTGGAT
CGCGCGGGCTCGTCAAGTGAAGAAGAAAATTTTTCTTCTACCTCACCGAT
CAAATGCATGTCGTCGAGTGCTTTTTTATCCATTGCCTTCAGTATGAGAA
TGTGGCACTATAGCTGCAATTCTTACACTCGGCGAAAGTCTGTGTAATCA
TTACGGACAGACTGTACTGACCTTAACAGCACTGTCCCCACCAAGGAGCA
GGTTCTCGTCCCCGAGACCCTCCTGAAGAAGCGCAAGAGCCAGGAGCAGG
CTCGCGCTGTCGCCCGTGAGGAGGCCGAGAAGAAGAAGGCCGTAAGTTTT
CCCTCTTTTTTCATATATCCTCTTTCCCTCTTCCTTCTATAGTGATGACA
ACAACCACCACGCGACTAGACTACGGTCGATGCTGTCGCTTCGTTAACCA
TCTTTCGGGGCTGAAAATGAAGCTTCAAATGATTTTATTTCACGAGTCAT
TTGCAAAGACCATCTGCTAACAGATGAATCCAGGCCAACAAGGAGAAGCG
CGCCGTTATCTTCAAGCGTGCCGAGTCCTACGTCAAGGAGTACCGCGATG
CTGAGCGCGAGAAGATCCGCCTTGCCCGCGTTGCTCGCAAGGAGGGTAAC
TTCTACGTTGCTGACGAGCCCAAGCTTGTCTTCGTTATCCGTATCAAGGG
GTAAGTTAATTTAGCATGCCATATGAATGTCATGATATTAACAACTTGAT
AGTATCAACAAGATCCCTCCCCAGCCCCGCAAGATCCTCCAGCTGCTCCG
TCTGCTCCAGATCAACAACGGTACCTTCGTCCGTCTTACCAAGGCTACCC
AGGAGATGTTGACCATCATCAACCCCTACATTGCCTACGGTTACCCCAAC
CTCAAGTCCGTCCGTGAGCTCGTCTACAAGCGCGGTTACGGAAAGGTCGA
CAAGCAGCGTGTTCCCCTCACCGACAACCAGATCATTGAGGAGAACCTCG
GCAAGTACGGCATTGTCTGCATGGAGGATCTGATCCACGAGATCTACACC
GTTGGCCCCAACTTCAAGCAGGCCAACAACTTCCTGTGGCCCTTCAAGCT
CTCCAACCCCACTGGTGGCTTCCACACCCGCAAGTTCAAGCACTTCATCG
AGGGTGGTGACTACGGTAACCGTGAGGAGAACATCAACGGCCTCATCCGC
CAGATGAACTAG
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Coding sequence (CDS) from alignment at NKJJ01000011.1:1987151..1988762-

>CAN33_19260-T1 ID=CAN33_19260-T1|Name=CAN33_19260-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=3024bp|location=Sequence derived from alignment at NKJJ01000011.1:1987151..1988762- (Aspergillus niger FDAARGOS_311)
TATCAACAAGATCCCTCCCCAGCCCCGCAAGATCCTCCAGCTGCTCCGTC
TGCTCCAGATCAACAACGGTACCTTCGTCCGTCTTACCAAGGCTACCCAG
GAGATGTTGACCATCATCAACCCCTACATTGCCTACGGTTACCCCAACCT
CAAGTCCGTCCGTGAGCTCGTCTACAAGCGCGGTTACGGAAAGGTCGACA
AGCAGCGTGTTCCCCTCACCGACAACCAGATCATTGAGGAGAACCTCGGC
AAGTACGGCATTGTCTGCATGGAGGATCTGATCCACGAGATCTACACCGT
TGGCCCCAACTTCAAGCAGGCCAACAACTTCCTGTGGCCCTTCAAGCTCT
CCAACCCCACTGGTGGCTTCCACACCCGCAAGTTCAAGCACTTCATCGAG
GGTGGTGACTACGGTAACCGTGAGGAGAACATCAACGGCCTCATCCGCCA
GATGAACTAGGCCAACAAGGAGAAGCGCGCCGTTATCTTCAAGCGTGCCG
AGTCCTACGTCAAGGAGTACCGCGATGCTGAGCGCGAGAAGATCCGCCTT
GCCCGCGTTGCTCGCAAGGAGGGTAACTTCTACGTTGCTGACGAGCCCAA
GCTTGTCTTCGTTATCCGTATCAAGGGCACTGTCCCCACCAAGGAGCAGG
TTCTCGTCCCCGAGACCCTCCTGAAGAAGCGCAAGAGCCAGGAGCAGGCT
CGCGCTGTCGCCCGTGAGGAGGCCGAGAAGAAGAAGGCCATGGCCTCCAC
TGCTACTATCAACAAGATCCCTCCCCAGCCCCGCAAGATCCTCCAGCTGC
TCCGTCTGCTCCAGATCAACAACGGTACCTTCGTCCGTCTTACCAAGGCT
ACCCAGGAGATGTTGACCATCATCAACCCCTACATTGCCTACGGTTACCC
CAACCTCAAGTCCGTCCGTGAGCTCGTCTACAAGCGCGGTTACGGAAAGG
TCGACAAGCAGCGTGTTCCCCTCACCGACAACCAGATCATTGAGGAGAAC
CTCGGCAAGTACGGCATTGTCTGCATGGAGGATCTGATCCACGAGATCTA
CACCGTTGGCCCCAACTTCAAGCAGGCCAACAACTTCCTGTGGCCCTTCA
AGCTCTCCAACCCCACTGGTGGCTTCCACACCCGCAAGTTCAAGCACTTC
ATCGAGGGTGGTGACTACGGTAACCGTGAGGAGAACATCAACGGCCTCAT
CCGCCAGATGAACTAGGCCAACAAGGAGAAGCGCGCCGTTATCTTCAAGC
GTGCCGAGTCCTACGTCAAGGAGTACCGCGATGCTGAGCGCGAGAAGATC
CGCCTTGCCCGCGTTGCTCGCAAGGAGGGTAACTTCTACGTTGCTGACGA
GCCCAAGCTTGTCTTCGTTATCCGTATCAAGGGCACTGTCCCCACCAAGG
AGCAGGTTCTCGTCCCCGAGACCCTCCTGAAGAAGCGCAAGAGCCAGGAG
CAGGCTCGCGCTGTCGCCCGTGAGGAGGCCGAGAAGAAGAAGGCCATGGC
CTCCACTGCTACTATCAACAAGATCCCTCCCCAGCCCCGCAAGATCCTCC
AGCTGCTCCGTCTGCTCCAGATCAACAACGGTACCTTCGTCCGTCTTACC
AAGGCTACCCAGGAGATGTTGACCATCATCAACCCCTACATTGCCTACGG
TTACCCCAACCTCAAGTCCGTCCGTGAGCTCGTCTACAAGCGCGGTTACG
GAAAGGTCGACAAGCAGCGTGTTCCCCTCACCGACAACCAGATCATTGAG
GAGAACCTCGGCAAGTACGGCATTGTCTGCATGGAGGATCTGATCCACGA
GATCTACACCGTTGGCCCCAACTTCAAGCAGGCCAACAACTTCCTGTGGC
CCTTCAAGCTCTCCAACCCCACTGGTGGCTTCCACACCCGCAAGTTCAAG
CACTTCATCGAGGGTGGTGACTACGGTAACCGTGAGGAGAACATCAACGG
CCTCATCCGCCAGATGAACTAGGCCAACAAGGAGAAGCGCGCCGTTATCT
TCAAGCGTGCCGAGTCCTACGTCAAGGAGTACCGCGATGCTGAGCGCGAG
AAGATCCGCCTTGCCCGCGTTGCTCGCAAGGAGGGTAACTTCTACGTTGC
TGACGAGCCCAAGCTTGTCTTCGTTATCCGTATCAAGGGCACTGTCCCCA
CCAAGGAGCAGGTTCTCGTCCCCGAGACCCTCCTGAAGAAGCGCAAGAGC
CAGGAGCAGGCTCGCGCTGTCGCCCGTGAGGAGGCCGAGAAGAAGAAGGC
CATGGCCTCCACTGCTACTATCAACAAGATCCCTCCCCAGCCCCGCAAGA
TCCTCCAGCTGCTCCGTCTGCTCCAGATCAACAACGGTACCTTCGTCCGT
CTTACCAAGGCTACCCAGGAGATGTTGACCATCATCAACCCCTACATTGC
CTACGGTTACCCCAACCTCAAGTCCGTCCGTGAGCTCGTCTACAAGCGCG
GTTACGGAAAGGTCGACAAGCAGCGTGTTCCCCTCACCGACAACCAGATC
ATTGAGGAGAACCTCGGCAAGTACGGCATTGTCTGCATGGAGGATCTGAT
CCACGAGATCTACACCGTTGGCCCCAACTTCAAGCAGGCCAACAACTTCC
TGTGGCCCTTCAAGCTCTCCAACCCCACTGGTGGCTTCCACACCCGCAAG
TTCAAGCACTTCATCGAGGGTGGTGACTACGGTAACCGTGAGGAGAACAT
CAACGGCCTCATCCGCCAGATGAACTAGGCCAACAAGGAGAAGCGCGCCG
TTATCTTCAAGCGTGCCGAGTCCTACGTCAAGGAGTACCGCGATGCTGAG
CGCGAGAAGATCCGCCTTGCCCGCGTTGCTCGCAAGGAGGGTAACTTCTA
CGTTGCTGACGAGCCCAAGCTTGTCTTCGTTATCCGTATCAAGGGCACTG
TCCCCACCAAGGAGCAGGTTCTCGTCCCCGAGACCCTCCTGAAGAAGCGC
AAGAGCCAGGAGCAGGCTCGCGCTGTCGCCCGTGAGGAGGCCGAGAAGAA
GAAGGCCATGGCCTCCACTGCTAC
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0022625cytosolic large ribosomal subunit
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0000463maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RPL7CAN33_19260Aspergillus niger FDAARGOS_311gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CAN33_19260-T1CAN33_19260-T1-proteinAspergillus niger FDAARGOS_311polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_19260-T1.cdsCAN33_19260-T1.cdsAspergillus niger FDAARGOS_311CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_19260-T1.exon4CAN33_19260-T1.exon4Aspergillus niger FDAARGOS_311exon
CAN33_19260-T1.exon3CAN33_19260-T1.exon3Aspergillus niger FDAARGOS_311exon
CAN33_19260-T1.exon2CAN33_19260-T1.exon2Aspergillus niger FDAARGOS_311exon
CAN33_19260-T1.exon1CAN33_19260-T1.exon1Aspergillus niger FDAARGOS_311exon


Properties
Property NameValue
NoteBUSCO:EOG09264P3R
DBxrefInterPro:IPR035808
DBxrefInterPro:IPR018038
DBxrefInterPro:IPR012988
DBxrefInterPro:IPR016082
DBxrefInterPro:IPR005998
DBxrefInterPro:IPR023106
DBxrefInterPro:IPR036919
DBxrefPFAM:PF08079
DBxrefPFAM:PF00327
Product60S ribosomal protein L7
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger FDAARGOS_311 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NKJJ01000011.1supercontigNKJJ01000011.1:1987151..1988762 -
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