You are here

Home

CAN33_2180-T1, CAN33_2180-T1 (mRNA) Aspergillus niger FDAARGOS_311

Overview
NameCAN33_2180-T1
Unique NameCAN33_2180-T1
TypemRNA
OrganismAspergillus niger FDAARGOS_311
Sequences
The following sequences are available for this feature:

mRNA from alignment at NKJJ01000004.1:1326016..1326588+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>CAN33_2180-T1 ID=CAN33_2180-T1|Name=CAN33_2180-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=573bp|location=Sequence derived from alignment at NKJJ01000004.1:1326016..1326588+ (Aspergillus niger FDAARGOS_311)
ATGGCGGCGACCGATCTGCCCATGACCCAACCCTCTTTCGAACCATCCTC
CTACGAATCCACCTCCTTCACCTCATCCGTCAATTCCTCCCCTTTCAACG
CCTACTACAACTTCACTCCTTCTCTTATGTATTCGCCGGAAGCATACACT
TTTCTTCAAACACAAACACCTCCGGTGCCTGTATCGGGCGGGGAATGGGT
TGCGCCGCAATCCACCACTCCCAGCACCGAGGTCGTATACTCTCCGGAAG
AGACTTGCGACGCATTAGACAACTCTAGGTATGGTTTCCGCCCTAACAGA
AAATTTTCCGACCGTAATCTAATAGACCTGTCTAGACCCGTCAAACCCTT
CTCGTGCCGCGACTGCGGCAAGGCGTTCACACGTCCCGCCGACCTGAAAC
GGCATCACACCAGTGTCCACAACCCCGTGTTTCAGGACTGCCCGGTACAA
GAATGCCTACGCAAGGATGGCAATGGGTTTCCGCGTCGCGACCATCTGAT
TGAACACCTGCGCTCGTTTCACCACTGGGACGTTCCTAAGCGTCGGACGA
CCAAGCGATCGCGAACTGATTAG
back to top

Coding sequence (CDS) from alignment at NKJJ01000004.1:1326016..1326588+

>CAN33_2180-T1 ID=CAN33_2180-T1|Name=CAN33_2180-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=1032bp|location=Sequence derived from alignment at NKJJ01000004.1:1326016..1326588+ (Aspergillus niger FDAARGOS_311)
ATGGCGGCGACCGATCTGCCCATGACCCAACCCTCTTTCGAACCATCCTC
CTACGAATCCACCTCCTTCACCTCATCCGTCAATTCCTCCCCTTTCAACG
CCTACTACAACTTCACTCCTTCTCTTATGTATTCGCCGGAAGCATACACT
TTTCTTCAAACACAAACACCTCCGGTGCCTGTATCGGGCGGGGAATGGGT
TGCGCCGCAATCCACCACTCCCAGCACCGAGGTCGTATACTCTCCGGAAG
AGACTTGCGACGCATTAGACAACTCTAGACCCGTCAAACCCTTCTCGTGC
CGCGACTGCGGCAAGGCGTTCACACGTCCCGCCGACCTGAAACGGCATCA
CACCAGTGTCCACAACCCCGTGTTTCAGGACTGCCCGGTACAAGAATGCC
TACGCAAGGATGGCAATGGGTTTCCGCGTCGCGACCATCTGATTGAACAC
CTGCGCTCGTTTCACCACTGGGACGTTCCTAAGCGTCGGACGACCAAGCG
ATCGCGAACTGATTAGATGGCGGCGACCGATCTGCCCATGACCCAACCCT
CTTTCGAACCATCCTCCTACGAATCCACCTCCTTCACCTCATCCGTCAAT
TCCTCCCCTTTCAACGCCTACTACAACTTCACTCCTTCTCTTATGTATTC
GCCGGAAGCATACACTTTTCTTCAAACACAAACACCTCCGGTGCCTGTAT
CGGGCGGGGAATGGGTTGCGCCGCAATCCACCACTCCCAGCACCGAGGTC
GTATACTCTCCGGAAGAGACTTGCGACGCATTAGACAACTCTAGACCCGT
CAAACCCTTCTCGTGCCGCGACTGCGGCAAGGCGTTCACACGTCCCGCCG
ACCTGAAACGGCATCACACCAGTGTCCACAACCCCGTGTTTCAGGACTGC
CCGGTACAAGAATGCCTACGCAAGGATGGCAATGGGTTTCCGCGTCGCGA
CCATCTGATTGAACACCTGCGCTCGTTTCACCACTGGGACGTTCCTAAGC
GTCGGACGACCAAGCGATCGCGAACTGATTAG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CAN33_2180CAN33_2180Aspergillus niger FDAARGOS_311gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_2180-T1.exon1CAN33_2180-T1.exon1Aspergillus niger FDAARGOS_311exon
CAN33_2180-T1.exon2CAN33_2180-T1.exon2Aspergillus niger FDAARGOS_311exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_2180-T1.cdsCAN33_2180-T1.cdsAspergillus niger FDAARGOS_311CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CAN33_2180-T1CAN33_2180-T1-proteinAspergillus niger FDAARGOS_311polypeptide


Properties
Property NameValue
NoteEggNog:ENOG41
DBxrefInterPro:IPR036236
DBxrefInterPro:IPR013087
DBxrefPFAM:PF00096
ProductZinc finger C2H2 type family protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger FDAARGOS_311 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NKJJ01000004.1supercontigNKJJ01000004.1:1326016..1326588 +
Powered by Drupal