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CAN33_25930-T1, CAN33_25930-T1 (mRNA) Aspergillus niger FDAARGOS_311

Overview
NameCAN33_25930-T1
Unique NameCAN33_25930-T1
TypemRNA
OrganismAspergillus niger FDAARGOS_311
Sequences
The following sequences are available for this feature:

mRNA from alignment at NKJJ01000002.1:2572279..2573565-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>CAN33_25930-T1 ID=CAN33_25930-T1|Name=CAN33_25930-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=1287bp|location=Sequence derived from alignment at NKJJ01000002.1:2572279..2573565- (Aspergillus niger FDAARGOS_311)
ATGCCTCCCAAGAAGACTTCCACCACCGGCACCACCAAGAAGTCCGGCTC
GAGCCACGCCTCCTACCGTGGTATGTTTTGACTGATCTTCCACCACCAAC
CCATCGCGTAGAATTGAAATTAATATCGTTTTTGTCGCGAATGACTGCTG
ATTCCATGAATATAGATATGATCAAGGATGCTATCCTGAATGTGAGTTAA
TCACGCTGTTCCCGGTGCGCGTTGGGATGAACGGGCGCTGGGCGGGATCT
CCGACCGTGACACGTCTACACGGTGCTTAATTGTCCCAACGCCCCATCGG
GCTCCTGCTTGTTTCACCTCCCAAATGGGTCGCTGACTTCTTTCGCAACA
GCTGAAAGAGCGCAATGGTAGCAGGTAAGTTGTTTGGTGCTTCTTCTCCC
CCGCCCGATGCAGGGTCCCGTTCGCTGGCGACGTGGCAACCTATCACCCT
GTCCAGGTCGCGATCTCGGCTGACTCGTCTTGTTTCTCCTCGACTGTAGC
CGCCAGTCGATCAAGAAATATGTTCAGGCGAACAATAAGATTGCTTCTGC
CTCCACCAACGCCTTCGACAGCCAGTTCAACAAGGCCATCAAGGCTGGTG
TTGAGAAGGGCGAGTTCCTTCAGCCCAAGGGTAAGTCAATCCATCGCGCG
CATTTTTTGCCTTCTCATGTCGCAACGGCATTCGATACTCCTGACATGGA
AGGATGTGTCTTGACTGCCGTCGTTCGCGTCTTTCATTTTTCGGTCTTGT
TTTTGTTTGATGGGGCGTGTCAACTGACGCGTCGTCAACCAGGCCCCTCC
GGACCCGTGAAGCTTGCCAAGAAGGAAGCTGCCCCCAAGCCTGCTGCTAA
GGTAAGTCTTTATCAATGACATTTCGAACTGATAGAGAACTATTACTAAC
ACTGTCCATAGAAGACTGCCACCAAGGCTGCTACTGCTAAGAAGCCTGCT
GCCAAGAAGACCGAGAAGACTGAGAAGGCCGAGAAGGCCGAGAAGCCCAA
GACCACCAAGAAGGCCACCACCACTGCTAAGAAGCCTGTTGGCAGGCCCA
AGGCTAACACGGCCAAGCCTCGCAAGTCCTCCACTACTGTAAGTTGTAGA
CTCCTGCCTTCTCACCCCCGGCGGACAGGGTATACTAATCTTGAAGCAGG
CTCCCGCCGTTGTCGACAAGCCCAAGGTCCTCAAAACCACCAAGAGTGGC
CGGGTGACTAAGACGACGGCTAAGCCTGCAGAGAAGGCCACCAAGAAGAC
CACTAAGAAGGCTGCTGCAAAGGAGACTGCTGCTTAA
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Coding sequence (CDS) from alignment at NKJJ01000002.1:2572279..2573565-

>CAN33_25930-T1 ID=CAN33_25930-T1|Name=CAN33_25930-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=3738bp|location=Sequence derived from alignment at NKJJ01000002.1:2572279..2573565- (Aspergillus niger FDAARGOS_311)
GCTCCCGCCGTTGTCGACAAGCCCAAGGTCCTCAAAACCACCAAGAGTGG
CCGGGTGACTAAGACGACGGCTAAGCCTGCAGAGAAGGCCACCAAGAAGA
CCACTAAGAAGGCTGCTGCAAAGGAGACTGCTGCTTAAACCACCAAGAAG
GCCACCACCACTGCTAAGAAGCCTGTTGGCAGGCCCAAGGCTAACACGGC
CAAGCCTCGCAAGTCCTCCACTACTGCCCCTCCGGACCCGTGAAGCTTGC
CAAGAAGGAAGCTGCCCCCAAGCCTGCTGCTAAGCCGCCAGTCGATCAAG
AAATATGTTCAGGCGAACAATAAGATTGCTTCTGCCTCCACCAACGCCTT
CGACAGCCAGTTCAACAAGGCCATCAAGGCTGGTGTTGAGAAGGGCGAGT
TCCTTCAGCCCAAGGCTGAAAGAGCGCAATGGTAGCAGATATGATCAAGG
ATGCTATCCTGAATATGCCTCCCAAGAAGACTTCCACCACCGGCACCACC
AAGAAGTCCGGCTCGAGCCACGCCTCCTACCGTGGCTCCCGCCGTTGTCG
ACAAGCCCAAGGTCCTCAAAACCACCAAGAGTGGCCGGGTGACTAAGACG
ACGGCTAAGCCTGCAGAGAAGGCCACCAAGAAGACCACTAAGAAGGCTGC
TGCAAAGGAGACTGCTGCTTAAACCACCAAGAAGGCCACCACCACTGCTA
AGAAGCCTGTTGGCAGGCCCAAGGCTAACACGGCCAAGCCTCGCAAGTCC
TCCACTACTGCCCCTCCGGACCCGTGAAGCTTGCCAAGAAGGAAGCTGCC
CCCAAGCCTGCTGCTAAGCCGCCAGTCGATCAAGAAATATGTTCAGGCGA
ACAATAAGATTGCTTCTGCCTCCACCAACGCCTTCGACAGCCAGTTCAAC
AAGGCCATCAAGGCTGGTGTTGAGAAGGGCGAGTTCCTTCAGCCCAAGGC
TGAAAGAGCGCAATGGTAGCAGATATGATCAAGGATGCTATCCTGAATAT
GCCTCCCAAGAAGACTTCCACCACCGGCACCACCAAGAAGTCCGGCTCGA
GCCACGCCTCCTACCGTGGCTCCCGCCGTTGTCGACAAGCCCAAGGTCCT
CAAAACCACCAAGAGTGGCCGGGTGACTAAGACGACGGCTAAGCCTGCAG
AGAAGGCCACCAAGAAGACCACTAAGAAGGCTGCTGCAAAGGAGACTGCT
GCTTAAACCACCAAGAAGGCCACCACCACTGCTAAGAAGCCTGTTGGCAG
GCCCAAGGCTAACACGGCCAAGCCTCGCAAGTCCTCCACTACTGCCCCTC
CGGACCCGTGAAGCTTGCCAAGAAGGAAGCTGCCCCCAAGCCTGCTGCTA
AGCCGCCAGTCGATCAAGAAATATGTTCAGGCGAACAATAAGATTGCTTC
TGCCTCCACCAACGCCTTCGACAGCCAGTTCAACAAGGCCATCAAGGCTG
GTGTTGAGAAGGGCGAGTTCCTTCAGCCCAAGGCTGAAAGAGCGCAATGG
TAGCAGATATGATCAAGGATGCTATCCTGAATATGCCTCCCAAGAAGACT
TCCACCACCGGCACCACCAAGAAGTCCGGCTCGAGCCACGCCTCCTACCG
TGGCTCCCGCCGTTGTCGACAAGCCCAAGGTCCTCAAAACCACCAAGAGT
GGCCGGGTGACTAAGACGACGGCTAAGCCTGCAGAGAAGGCCACCAAGAA
GACCACTAAGAAGGCTGCTGCAAAGGAGACTGCTGCTTAAACCACCAAGA
AGGCCACCACCACTGCTAAGAAGCCTGTTGGCAGGCCCAAGGCTAACACG
GCCAAGCCTCGCAAGTCCTCCACTACTGCCCCTCCGGACCCGTGAAGCTT
GCCAAGAAGGAAGCTGCCCCCAAGCCTGCTGCTAAGCCGCCAGTCGATCA
AGAAATATGTTCAGGCGAACAATAAGATTGCTTCTGCCTCCACCAACGCC
TTCGACAGCCAGTTCAACAAGGCCATCAAGGCTGGTGTTGAGAAGGGCGA
GTTCCTTCAGCCCAAGGCTGAAAGAGCGCAATGGTAGCAGATATGATCAA
GGATGCTATCCTGAATATGCCTCCCAAGAAGACTTCCACCACCGGCACCA
CCAAGAAGTCCGGCTCGAGCCACGCCTCCTACCGTGGCTCCCGCCGTTGT
CGACAAGCCCAAGGTCCTCAAAACCACCAAGAGTGGCCGGGTGACTAAGA
CGACGGCTAAGCCTGCAGAGAAGGCCACCAAGAAGACCACTAAGAAGGCT
GCTGCAAAGGAGACTGCTGCTTAAACCACCAAGAAGGCCACCACCACTGC
TAAGAAGCCTGTTGGCAGGCCCAAGGCTAACACGGCCAAGCCTCGCAAGT
CCTCCACTACTGCCCCTCCGGACCCGTGAAGCTTGCCAAGAAGGAAGCTG
CCCCCAAGCCTGCTGCTAAGCCGCCAGTCGATCAAGAAATATGTTCAGGC
GAACAATAAGATTGCTTCTGCCTCCACCAACGCCTTCGACAGCCAGTTCA
ACAAGGCCATCAAGGCTGGTGTTGAGAAGGGCGAGTTCCTTCAGCCCAAG
GCTGAAAGAGCGCAATGGTAGCAGATATGATCAAGGATGCTATCCTGAAT
ATGCCTCCCAAGAAGACTTCCACCACCGGCACCACCAAGAAGTCCGGCTC
GAGCCACGCCTCCTACCGTGGCTCCCGCCGTTGTCGACAAGCCCAAGGTC
CTCAAAACCACCAAGAGTGGCCGGGTGACTAAGACGACGGCTAAGCCTGC
AGAGAAGGCCACCAAGAAGACCACTAAGAAGGCTGCTGCAAAGGAGACTG
CTGCTTAAACCACCAAGAAGGCCACCACCACTGCTAAGAAGCCTGTTGGC
AGGCCCAAGGCTAACACGGCCAAGCCTCGCAAGTCCTCCACTACTGCCCC
TCCGGACCCGTGAAGCTTGCCAAGAAGGAAGCTGCCCCCAAGCCTGCTGC
TAAGCCGCCAGTCGATCAAGAAATATGTTCAGGCGAACAATAAGATTGCT
TCTGCCTCCACCAACGCCTTCGACAGCCAGTTCAACAAGGCCATCAAGGC
TGGTGTTGAGAAGGGCGAGTTCCTTCAGCCCAAGGCTGAAAGAGCGCAAT
GGTAGCAGATATGATCAAGGATGCTATCCTGAATATGCCTCCCAAGAAGA
CTTCCACCACCGGCACCACCAAGAAGTCCGGCTCGAGCCACGCCTCCTAC
CGTGGCTCCCGCCGTTGTCGACAAGCCCAAGGTCCTCAAAACCACCAAGA
GTGGCCGGGTGACTAAGACGACGGCTAAGCCTGCAGAGAAGGCCACCAAG
AAGACCACTAAGAAGGCTGCTGCAAAGGAGACTGCTGCTTAAACCACCAA
GAAGGCCACCACCACTGCTAAGAAGCCTGTTGGCAGGCCCAAGGCTAACA
CGGCCAAGCCTCGCAAGTCCTCCACTACTGCCCCTCCGGACCCGTGAAGC
TTGCCAAGAAGGAAGCTGCCCCCAAGCCTGCTGCTAAGCCGCCAGTCGAT
CAAGAAATATGTTCAGGCGAACAATAAGATTGCTTCTGCCTCCACCAACG
CCTTCGACAGCCAGTTCAACAAGGCCATCAAGGCTGGTGTTGAGAAGGGC
GAGTTCCTTCAGCCCAAGGCTGAAAGAGCGCAATGGTAGCAGATATGATC
AAGGATGCTATCCTGAATATGCCTCCCAAGAAGACTTCCACCACCGGCAC
CACCAAGAAGTCCGGCTCGAGCCACGCCTCCTACCGTG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0000786nucleosome
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006334nucleosome assembly
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CAN33_25930CAN33_25930Aspergillus niger FDAARGOS_311gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CAN33_25930-T1CAN33_25930-T1-proteinAspergillus niger FDAARGOS_311polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_25930-T1.cdsCAN33_25930-T1.cdsAspergillus niger FDAARGOS_311CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_25930-T1.exon7CAN33_25930-T1.exon7Aspergillus niger FDAARGOS_311exon
CAN33_25930-T1.exon6CAN33_25930-T1.exon6Aspergillus niger FDAARGOS_311exon
CAN33_25930-T1.exon5CAN33_25930-T1.exon5Aspergillus niger FDAARGOS_311exon
CAN33_25930-T1.exon4CAN33_25930-T1.exon4Aspergillus niger FDAARGOS_311exon
CAN33_25930-T1.exon3CAN33_25930-T1.exon3Aspergillus niger FDAARGOS_311exon
CAN33_25930-T1.exon2CAN33_25930-T1.exon2Aspergillus niger FDAARGOS_311exon
CAN33_25930-T1.exon1CAN33_25930-T1.exon1Aspergillus niger FDAARGOS_311exon


Properties
Property NameValue
DBxrefInterPro:IPR036390
DBxrefInterPro:IPR036388
DBxrefInterPro:IPR005818
DBxrefInterPro:IPR005819
DBxrefPFAM:PF00538
Productlinker histone H1 and H5 family protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger FDAARGOS_311 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NKJJ01000002.1supercontigNKJJ01000002.1:2572279..2573565 -
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