|
|
Sequences
The following sequences are available for this feature:
mRNA from alignment at NKJJ01000004.1:1613926..1614977- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below. >CAN33_2620-T1 ID=CAN33_2620-T1|Name=CAN33_2620-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=1052bp|location=Sequence derived from alignment at NKJJ01000004.1:1613926..1614977- (Aspergillus niger FDAARGOS_311)
ATGCCACGAGAATACGCCCCCGCCCACAGAAAACGCAAATCCCACGATAT
CTCCGACGATGCAGATGCTGCTGCAGCGCCCGGAGCCGGAGCAGGCCCGC
GCAAGAAAATCCTCCTCCCCAAGAAAGAACACAAATACCCGTCTGTCAAC
GAGCTCAAGAAACGTATCCGGGATGTGAAGCGTCTACTCAACAAGGCGGA
TTTGCCGGCCGATGCGCGCATCGTGCAGGAGCGCGCGTTGTCCGGGTATG
AGAAGGAATTGGAGGATGAGTTGAAGAGGAGGGATCGGTCGAAGATGATT
AAGAAGTATCATTTTGTTAGGTTTTTGGGTATGCTTTTCTTCCTCTACCC
CCGCCCTCTTTCTTACGATGTCTTGCTGTGCCGTGGGTTTTATATGGGGG
CTGTTGCTAATTCGATACTCGATCTGTAGACCGCAAAACCGCAACCAAAG
ACGTGAACCGGCTGGTGCGCCGGGAAAAGGAAGTCTCGAGTGCTGGACCC
GATGCCATGGATACCAAGACCAAGGAGAAGAAACTTGCTTCGTTGGCGGA
GAAGCTCCGAGTCGCTCGCGTGAACTTGAACTATACTATTTACTATCCAT
TGGATGAGAAGTATATCGCCTTGTACGCGGAGCAGAAGAAGAAGGTTAAG
GGAGACGGTGCGGAGGATGGTGGTGATGGCGCTGACTCGGACGGTGATGC
ACGGTTTGGAATGGTGCATGCGACGGTTGCCGATAAGCCGGCGATGTGGC
ATGTGGTGGAGAAGTGTATGAAGGATGGGACGTTGGATATGTTGAGGGAT
GGAAAGCTGGAGTCTGGGGCGAAGGCTGGGGAGAAGGATCGGAAGAAGGA
GGAGAGAAGTCAGAGGGCTGGTGATAAGGCGAAGAAGAGTCAAGAGCGTG
GGGTGTCGTCGTCGCAGGCTGGAAAGAGCAGGGACAGGTCCAGGAAGGTG
GATGATAGGAAGAGGTCTAGGGGCCCTGCTGAAGATCATGTCATGCGGGA
TGCAGGCAATGATGACGGCGATGAGAGTGATGGCGGTTTCTTTGAGATGT
GA back to topCoding sequence (CDS) from alignment at NKJJ01000004.1:1613926..1614977- >CAN33_2620-T1 ID=CAN33_2620-T1|Name=CAN33_2620-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=1902bp|location=Sequence derived from alignment at NKJJ01000004.1:1613926..1614977- (Aspergillus niger FDAARGOS_311)
ACCGCAAAACCGCAACCAAAGACGTGAACCGGCTGGTGCGCCGGGAAAAG
GAAGTCTCGAGTGCTGGACCCGATGCCATGGATACCAAGACCAAGGAGAA
GAAACTTGCTTCGTTGGCGGAGAAGCTCCGAGTCGCTCGCGTGAACTTGA
ACTATACTATTTACTATCCATTGGATGAGAAGTATATCGCCTTGTACGCG
GAGCAGAAGAAGAAGGTTAAGGGAGACGGTGCGGAGGATGGTGGTGATGG
CGCTGACTCGGACGGTGATGCACGGTTTGGAATGGTGCATGCGACGGTTG
CCGATAAGCCGGCGATGTGGCATGTGGTGGAGAAGTGTATGAAGGATGGG
ACGTTGGATATGTTGAGGGATGGAAAGCTGGAGTCTGGGGCGAAGGCTGG
GGAGAAGGATCGGAAGAAGGAGGAGAGAAGTCAGAGGGCTGGTGATAAGG
CGAAGAAGAGTCAAGAGCGTGGGGTGTCGTCGTCGCAGGCTGGAAAGAGC
AGGGACAGGTCCAGGAAGGTGGATGATAGGAAGAGGTCTAGGGGCCCTGC
TGAAGATCATGTCATGCGGGATGCAGGCAATGATGACGGCGATGAGAGTG
ATGGCGGTTTCTTTGAGATGTGAATGCCACGAGAATACGCCCCCGCCCAC
AGAAAACGCAAATCCCACGATATCTCCGACGATGCAGATGCTGCTGCAGC
GCCCGGAGCCGGAGCAGGCCCGCGCAAGAAAATCCTCCTCCCCAAGAAAG
AACACAAATACCCGTCTGTCAACGAGCTCAAGAAACGTATCCGGGATGTG
AAGCGTCTACTCAACAAGGCGGATTTGCCGGCCGATGCGCGCATCGTGCA
GGAGCGCGCGTTGTCCGGGTATGAGAAGGAATTGGAGGATGAGTTGAAGA
GGAGGGATCGGTCGAAGATGATTAAGAAGTATCATTTTGTTAGGTTTTTG
GACCGCAAAACCGCAACCAAAGACGTGAACCGGCTGGTGCGCCGGGAAAA
GGAAGTCTCGAGTGCTGGACCCGATGCCATGGATACCAAGACCAAGGAGA
AGAAACTTGCTTCGTTGGCGGAGAAGCTCCGAGTCGCTCGCGTGAACTTG
AACTATACTATTTACTATCCATTGGATGAGAAGTATATCGCCTTGTACGC
GGAGCAGAAGAAGAAGGTTAAGGGAGACGGTGCGGAGGATGGTGGTGATG
GCGCTGACTCGGACGGTGATGCACGGTTTGGAATGGTGCATGCGACGGTT
GCCGATAAGCCGGCGATGTGGCATGTGGTGGAGAAGTGTATGAAGGATGG
GACGTTGGATATGTTGAGGGATGGAAAGCTGGAGTCTGGGGCGAAGGCTG
GGGAGAAGGATCGGAAGAAGGAGGAGAGAAGTCAGAGGGCTGGTGATAAG
GCGAAGAAGAGTCAAGAGCGTGGGGTGTCGTCGTCGCAGGCTGGAAAGAG
CAGGGACAGGTCCAGGAAGGTGGATGATAGGAAGAGGTCTAGGGGCCCTG
CTGAAGATCATGTCATGCGGGATGCAGGCAATGATGACGGCGATGAGAGT
GATGGCGGTTTCTTTGAGATGTGAATGCCACGAGAATACGCCCCCGCCCA
CAGAAAACGCAAATCCCACGATATCTCCGACGATGCAGATGCTGCTGCAG
CGCCCGGAGCCGGAGCAGGCCCGCGCAAGAAAATCCTCCTCCCCAAGAAA
GAACACAAATACCCGTCTGTCAACGAGCTCAAGAAACGTATCCGGGATGT
GAAGCGTCTACTCAACAAGGCGGATTTGCCGGCCGATGCGCGCATCGTGC
AGGAGCGCGCGTTGTCCGGGTATGAGAAGGAATTGGAGGATGAGTTGAAG
AGGAGGGATCGGTCGAAGATGATTAAGAAGTATCATTTTGTTAGGTTTTT
GG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006364 | rRNA processing |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| Note | EggNog:ENOG41 |
| Note | BUSCO:EOG09264UKL |
| DBxref | InterPro:IPR019310 |
| DBxref | PFAM:PF10153 |
| Product | 18S rRNA maturation protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| NKJJ01000004.1 | supercontig | NKJJ01000004.1:1613926..1614977 - |
|
