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CAN33_2710-T1, CAN33_2710-T1 (mRNA) Aspergillus niger FDAARGOS_311

Overview
NameCAN33_2710-T1
Unique NameCAN33_2710-T1
TypemRNA
OrganismAspergillus niger FDAARGOS_311
Sequences
The following sequences are available for this feature:

mRNA from alignment at NKJJ01000004.1:1672910..1674681+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>CAN33_2710-T1 ID=CAN33_2710-T1|Name=CAN33_2710-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=1772bp|location=Sequence derived from alignment at NKJJ01000004.1:1672910..1674681+ (Aspergillus niger FDAARGOS_311)
ATGTCTGCGCGGTGGCAGAAATTGCACATATCAAATCGTGCGCCTGCGCC
ACCTCTATTTTATAGATACACCCTTTTCAGAGATGGATATGAGCTGTACC
TAACCGATCTCACGTATATTTGGTCCGAGCGTCCCAACCGCCAGCATATT
CTGGGAAGAGCCGTTGAAGAGGATGCGACAATTGACCCCAGCCAAGATAT
AGATCAGTTCAATATACTTCTGGAGAAATTAGGGGAGGCCTTGCGCAATG
ACCCGGGTACCAGCACTGTACTAAGGCGTGGACGGGAGAATGATACTCTA
CACCTGACCACTACAACAAGCCTACCGGCCCCACTTGAGCCTCTGAAGTG
GAATTTCTACATGGCTAGAGAGAAACAGCGCTTTTCGACTACTCAACTGC
TTATCCCGCATATAAAGTCTGAGGCTGCCTGGGAGTTGCGCCAGCGGGAA
CTAATCGAAGTTGTTAAACGGAAGGATTGGCTGCTGTCAAAGCTACTCGA
TAAGCTTGAAGCCGTCGGGCTTGATCTCAGCACTATCTTCCCTAGTATTC
CTGGACTCAGGGCCAACCACAAGGGCTCAACACAGTCACAGGCCGCCAAG
TATGTTAGTGGAGCGAGACCTTTCGATGAGGATGCCTGGCTTGAGGAGAA
CAACGCGATAACATCTGAGACCGGATTCGCATCCACCATTTTGGAAGAAA
CAGAAGATTCTACCCTTGATGATAATCTTCTGCTACTCGAAGATCTCAGC
GCGCCATCAGAAGGATGGTGGAGGAAGATGTCCACCGTTAACAATAACAC
CGAAGCCGTAGATGCCAGGACCCCGGAGGACTCGACGAACATGGACACTA
CGGACGGTGGTTTGGAGACTGAGGATGACTTTGACGATGATGATGACGAT
GATTTTGAGGTACGTACCTTTCCACGCAATGCAGTGCCTTGTATTCATAT
TTCGCATTTCAGCGACAAGAGACCCCCCCGAGACTCAGACCTCAGCCAAA
CCACCAAACTCCCCCTTCAGGGCCAGGCGAGGACACAGCAACAGAAAGTG
AAGATGACCTTGAAGATCGAAATGGGGGACCAAGTACAGCGAAGTCTCCG
GCATCACGAAACACTTCCAGGGGCCTTGGAACAATCGGAGGCAACAGAAA
ACAGCCCCCACAACCAGAATCGCCTCAAACATCACCAGCATTAGCAGATG
TCGACGCAGCGATACCAAGACGCAAGACCCCCACAACCCAAGCAGACAGC
GACCAAACAGCCTCCGAGACAGACGACGACCACGACGACAATCATCCCTC
CCCATCACCCTCACCGCCGCCCTCAAACCGTCAAACAAAGCCCCGCAAAA
TAGGTATGATAGGTGGCAAGAAAGCCGAAAAACAAGCCTCCCCACCAGCG
TCACCAAATCCCGAATCATCCAGTAAACTCCAGTCAAAACCCCGCGGGAT
TGGCGTCATAGGTGGTAAGGGCAAAGCAAGGCAAGCTTCCCCACCATCAT
CACCGCCACCAGAAGCCGAATCATCGACCAAGGCCCACAGACTAGGAGTG
ATAGGCGGCCGGAAGAGAGAAAAACAAGCCGCGTCGTCGCCAGCAGCTAC
AGCAACGCAGTCCTCAGGGCCACCATCCCCTGCACCAGCTCTGGACGAAC
AACCCGCAGAGCCGGAGAAGGAAGAAACAGAGGAAGAAAAAGCGGACAGG
AAGCGGGAAGAGCTGAAGAGACAGCTTGAAGCTAAGAGCAAGGCGCCTGC
TAAGAAGAAGCGGAAGTTTTAA
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Coding sequence (CDS) from alignment at NKJJ01000004.1:1672910..1674681+

>CAN33_2710-T1 ID=CAN33_2710-T1|Name=CAN33_2710-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=2340bp|location=Sequence derived from alignment at NKJJ01000004.1:1672910..1674681+ (Aspergillus niger FDAARGOS_311)
ATGTCTGCGCGGTGGCAGAAATTGCACATATCAAATCGTGCGCCTGCGCC
ACCTCTATTTTATAGATACACCCTTTTCAGAGATGGATATGAGCTGTACC
TAACCGATCTCACGTATATTTGGTCCGAGCGTCCCAACCGCCAGCATATT
CTGGGAAGAGCCGTTGAAGAGGATGCGACAATTGACCCCAGCCAAGATAT
AGATCAGTTCAATATACTTCTGGAGAAATTAGGGGAGGCCTTGCGCAATG
ACCCGGGTACCAGCACTGTACTAAGGCGTGGACGGGAGAATGATACTCTA
CACCTGACCACTACAACAAGCCTACCGGCCCCACTTGAGCCTCTGAAGTG
GAATTTCTACATGGCTAGAGAGAAACAGCGCTTTTCGACTACTCAACTGC
TTATCCCGCATATAAAGTCTGAGGCTGCCTGGGAGTTGCGCCAGCGGGAA
CTAATCGAAGTTGTTAAACGGAAGGATTGGCTGCTGTCAAAGCTACTCGA
TAAGCTTGAAGCCGTCGGGCTTGATCTCAGCACTATCTTCCCTAGTATTC
CTGGACTCAGGGCCAACCACAAGGGCTCAACACAGTCACAGGCCGCCAAG
TATGTTAGTGGAGCGAGACCTTTCGATGAGGATGCCTGGCTTGAGGAGAA
CAACGCGATAACATCTGAGACCGGATTCGCATCCACCATTTTGGAAGAAA
CAGAAGATTCTACCCTTGATGATAATCTTCTGCTACTCGAAGATCTCAGC
GCGCCATCAGAAGGATGGTGGAGGAAGATGTCCACCGTTAACAATAACAC
CGAAGCCGTAGATGCCAGGACCCCGGAGGACTCGACGAACATGGACACTA
CGGACGGTGGTGGTAAGGGCAAAGCAAGGCAAGCTTCCCCACCATCATCA
CCGCCACCAGAAGCCGAATCATCGACCAAGGCCCACAGACTAGGAGTGAT
AGGCGGCCGGAAGAGAGAAAAACAAGCCGCGTCGTCGCCAGCAGCTACAG
CAACGCAGTCCTCAGGGCCACCATCCCCTGCACCAGCTCTGGACGAACAA
CCCGCAGAGCCGGAGAAGGAAGAAACAGAGGAAGAAAAAGCGGACAGGAA
GCGGGAAGAGCTGAAGAGACAGCTTGAAGCTAAGAGCAAGGCGCCTGCTA
AGAAGAAGCGGAAGTTTTAAATGTCTGCGCGGTGGCAGAAATTGCACATA
TCAAATCGTGCGCCTGCGCCACCTCTATTTTATAGATACACCCTTTTCAG
AGATGGATATGAGCTGTACCTAACCGATCTCACGTATATTTGGTCCGAGC
GTCCCAACCGCCAGCATATTCTGGGAAGAGCCGTTGAAGAGGATGCGACA
ATTGACCCCAGCCAAGATATAGATCAGTTCAATATACTTCTGGAGAAATT
AGGGGAGGCCTTGCGCAATGACCCGGGTACCAGCACTGTACTAAGGCGTG
GACGGGAGAATGATACTCTACACCTGACCACTACAACAAGCCTACCGGCC
CCACTTGAGCCTCTGAAGTGGAATTTCTACATGGCTAGAGAGAAACAGCG
CTTTTCGACTACTCAACTGCTTATCCCGCATATAAAGTCTGAGGCTGCCT
GGGAGTTGCGCCAGCGGGAACTAATCGAAGTTGTTAAACGGAAGGATTGG
CTGCTGTCAAAGCTACTCGATAAGCTTGAAGCCGTCGGGCTTGATCTCAG
CACTATCTTCCCTAGTATTCCTGGACTCAGGGCCAACCACAAGGGCTCAA
CACAGTCACAGGCCGCCAAGTATGTTAGTGGAGCGAGACCTTTCGATGAG
GATGCCTGGCTTGAGGAGAACAACGCGATAACATCTGAGACCGGATTCGC
ATCCACCATTTTGGAAGAAACAGAAGATTCTACCCTTGATGATAATCTTC
TGCTACTCGAAGATCTCAGCGCGCCATCAGAAGGATGGTGGAGGAAGATG
TCCACCGTTAACAATAACACCGAAGCCGTAGATGCCAGGACCCCGGAGGA
CTCGACGAACATGGACACTACGGACGGTGGTGGTAAGGGCAAAGCAAGGC
AAGCTTCCCCACCATCATCACCGCCACCAGAAGCCGAATCATCGACCAAG
GCCCACAGACTAGGAGTGATAGGCGGCCGGAAGAGAGAAAAACAAGCCGC
GTCGTCGCCAGCAGCTACAGCAACGCAGTCCTCAGGGCCACCATCCCCTG
CACCAGCTCTGGACGAACAACCCGCAGAGCCGGAGAAGGAAGAAACAGAG
GAAGAAAAAGCGGACAGGAAGCGGGAAGAGCTGAAGAGACAGCTTGAAGC
TAAGAGCAAGGCGCCTGCTAAGAAGAAGCGGAAGTTTTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006302double-strand break repair
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CAN33_2710CAN33_2710Aspergillus niger FDAARGOS_311gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_2710-T1.exon1CAN33_2710-T1.exon1Aspergillus niger FDAARGOS_311exon
CAN33_2710-T1.exon2CAN33_2710-T1.exon2Aspergillus niger FDAARGOS_311exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_2710-T1.cdsCAN33_2710-T1.cdsAspergillus niger FDAARGOS_311CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CAN33_2710-T1CAN33_2710-T1-proteinAspergillus niger FDAARGOS_311polypeptide


Properties
Property NameValue
NoteEggNog:ENOG41
DBxrefInterPro:IPR015381
DBxrefPFAM:PF09302
ProductXLF (XRCC4-like factor) family protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger FDAARGOS_311 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NKJJ01000004.1supercontigNKJJ01000004.1:1672910..1674681 +
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