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CAN33_29290-T1, CAN33_29290-T1 (mRNA) Aspergillus niger FDAARGOS_311

Overview
NameCAN33_29290-T1
Unique NameCAN33_29290-T1
TypemRNA
OrganismAspergillus niger FDAARGOS_311
Sequences
The following sequences are available for this feature:

mRNA from alignment at NKJJ01000008.1:680705..681790-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>CAN33_29290-T1 ID=CAN33_29290-T1|Name=CAN33_29290-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=1086bp|location=Sequence derived from alignment at NKJJ01000008.1:680705..681790- (Aspergillus niger FDAARGOS_311)
ATGGGATCGCTGATGCGTTTGTCGACATACAGTGACTGGGTTCATGACAA
GTACGAAGACGACAGAGATGGTGCGTTATACGACTCTCAATATGGCGAAT
AGCCATGGGAAATCATCCATGATCGGTCATTCTTAACACCTTACTCAGCA
CGCCCTTCTCGTGCCCCCGACGTCCGCGTGGCGACCGCTACTCCCCCTCT
CCCGAACAGTATGTTTATCCAGTGGCGCTTCGGTGAACGAAGCTGACCTG
TACAGACACAGCACTGCATCTAGCGGAGCTAAACTTCGTGTTGAGAACAT
CCATTACGACATTACAGAAACCGATCTCGAGGTAGGCCTCATTCCAGTCC
CCGCGTTTTTTCCTACTGAGCTCTGACATATGCAATGTAAAAGGACCTGT
TCACCCGCATCGGACCAATCAGTAATGTTTCTCTCGTTTACGACCGGGCA
GGACGTTCCGAAGGAGTCGCCTTTGTGACCTACACTCATATCGGCGATGC
GCGAACCGCGATTAGAGAATTCGACGGCGCAAACGCCAAAGGCCAGCCTA
TTCGTTTAACACTGATCTCTACCGGTGCCGGAAGACGCGACCGCAACCCA
TTTGACAACGTGGAACGCTCGAAGGGAAGTCTATTTGACCGCGTCGAGAG
ACCCCGTGACCGCGACGCACGGAGTCTCAGCCCCGGTAGTAGGAGCGGCA
GTCCTGATGGAGGTGCACGCCGCCGTCGTGGTCGTCGCGGTGGTGGCGGC
GGCGGGTACCGGCGCAGTGACGTCTCCAAACCGGCTCCCGAGCACATTGA
CAGATACATTCCTGGTCAGCGGTCGCCGACTCGCAACCGCGGCGCTACGA
ACGGGCGCCGCCAAGGCGGTGGAGGTGAGAACAAGGGCGACAGCCGTCGC
ATGGTTAACGGACGGCCCAGAAAGACACAGGAAGAGCTCGATCAAGAAAT
GGACGATTACTGGGGTGGCTCCGGCAACGCTGGTGCCGGCGCAGCTGATA
AAGAAGTTGTCCCTGACGAGCCTCAGCAGATTGCACCGGCGTCTGCGGCC
GCTGCTGGTGATGATGATATCGACATGATTGAGTGA
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Coding sequence (CDS) from alignment at NKJJ01000008.1:680705..681790-

>CAN33_29290-T1 ID=CAN33_29290-T1|Name=CAN33_29290-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=3612bp|location=Sequence derived from alignment at NKJJ01000008.1:680705..681790- (Aspergillus niger FDAARGOS_311)
GACCTGTTCACCCGCATCGGACCAATCAGTAATGTTTCTCTCGTTTACGA
CCGGGCAGGACGTTCCGAAGGAGTCGCCTTTGTGACCTACACTCATATCG
GCGATGCGCGAACCGCGATTAGAGAATTCGACGGCGCAAACGCCAAAGGC
CAGCCTATTCGTTTAACACTGATCTCTACCGGTGCCGGAAGACGCGACCG
CAACCCATTTGACAACGTGGAACGCTCGAAGGGAAGTCTATTTGACCGCG
TCGAGAGACCCCGTGACCGCGACGCACGGAGTCTCAGCCCCGGTAGTAGG
AGCGGCAGTCCTGATGGAGGTGCACGCCGCCGTCGTGGTCGTCGCGGTGG
TGGCGGCGGCGGGTACCGGCGCAGTGACGTCTCCAAACCGGCTCCCGAGC
ACATTGACAGATACATTCCTGGTCAGCGGTCGCCGACTCGCAACCGCGGC
GCTACGAACGGGCGCCGCCAAGGCGGTGGAGGTGAGAACAAGGGCGACAG
CCGTCGCATGGTTAACGGACGGCCCAGAAAGACACAGGAAGAGCTCGATC
AAGAAATGGACGATTACTGGGGTGGCTCCGGCAACGCTGGTGCCGGCGCA
GCTGATAAAGAAGTTGTCCCTGACGAGCCTCAGCAGATTGCACCGGCGTC
TGCGGCCGCTGCTGGTGATGATGATATCGACATGATTGAGTGAACACAGC
ACTGCATCTAGCGGAGCTAAACTTCGTGTTGAGAACATCCATTACGACAT
TACAGAAACCGATCTCGAGCACGCCCTTCTCGTGCCCCCGACGTCCGCGT
GGCGACCGCTACTCCCCCTCTCCCGAACAATGGGATCGCTGATGCGTTTG
TCGACATACAGTGACTGGGTTCATGACAAGTACGAAGACGACAGAGATGG
TGCGACCTGTTCACCCGCATCGGACCAATCAGTAATGTTTCTCTCGTTTA
CGACCGGGCAGGACGTTCCGAAGGAGTCGCCTTTGTGACCTACACTCATA
TCGGCGATGCGCGAACCGCGATTAGAGAATTCGACGGCGCAAACGCCAAA
GGCCAGCCTATTCGTTTAACACTGATCTCTACCGGTGCCGGAAGACGCGA
CCGCAACCCATTTGACAACGTGGAACGCTCGAAGGGAAGTCTATTTGACC
GCGTCGAGAGACCCCGTGACCGCGACGCACGGAGTCTCAGCCCCGGTAGT
AGGAGCGGCAGTCCTGATGGAGGTGCACGCCGCCGTCGTGGTCGTCGCGG
TGGTGGCGGCGGCGGGTACCGGCGCAGTGACGTCTCCAAACCGGCTCCCG
AGCACATTGACAGATACATTCCTGGTCAGCGGTCGCCGACTCGCAACCGC
GGCGCTACGAACGGGCGCCGCCAAGGCGGTGGAGGTGAGAACAAGGGCGA
CAGCCGTCGCATGGTTAACGGACGGCCCAGAAAGACACAGGAAGAGCTCG
ATCAAGAAATGGACGATTACTGGGGTGGCTCCGGCAACGCTGGTGCCGGC
GCAGCTGATAAAGAAGTTGTCCCTGACGAGCCTCAGCAGATTGCACCGGC
GTCTGCGGCCGCTGCTGGTGATGATGATATCGACATGATTGAGTGAACAC
AGCACTGCATCTAGCGGAGCTAAACTTCGTGTTGAGAACATCCATTACGA
CATTACAGAAACCGATCTCGAGCACGCCCTTCTCGTGCCCCCGACGTCCG
CGTGGCGACCGCTACTCCCCCTCTCCCGAACAATGGGATCGCTGATGCGT
TTGTCGACATACAGTGACTGGGTTCATGACAAGTACGAAGACGACAGAGA
TGGTGCGACCTGTTCACCCGCATCGGACCAATCAGTAATGTTTCTCTCGT
TTACGACCGGGCAGGACGTTCCGAAGGAGTCGCCTTTGTGACCTACACTC
ATATCGGCGATGCGCGAACCGCGATTAGAGAATTCGACGGCGCAAACGCC
AAAGGCCAGCCTATTCGTTTAACACTGATCTCTACCGGTGCCGGAAGACG
CGACCGCAACCCATTTGACAACGTGGAACGCTCGAAGGGAAGTCTATTTG
ACCGCGTCGAGAGACCCCGTGACCGCGACGCACGGAGTCTCAGCCCCGGT
AGTAGGAGCGGCAGTCCTGATGGAGGTGCACGCCGCCGTCGTGGTCGTCG
CGGTGGTGGCGGCGGCGGGTACCGGCGCAGTGACGTCTCCAAACCGGCTC
CCGAGCACATTGACAGATACATTCCTGGTCAGCGGTCGCCGACTCGCAAC
CGCGGCGCTACGAACGGGCGCCGCCAAGGCGGTGGAGGTGAGAACAAGGG
CGACAGCCGTCGCATGGTTAACGGACGGCCCAGAAAGACACAGGAAGAGC
TCGATCAAGAAATGGACGATTACTGGGGTGGCTCCGGCAACGCTGGTGCC
GGCGCAGCTGATAAAGAAGTTGTCCCTGACGAGCCTCAGCAGATTGCACC
GGCGTCTGCGGCCGCTGCTGGTGATGATGATATCGACATGATTGAGTGAA
CACAGCACTGCATCTAGCGGAGCTAAACTTCGTGTTGAGAACATCCATTA
CGACATTACAGAAACCGATCTCGAGCACGCCCTTCTCGTGCCCCCGACGT
CCGCGTGGCGACCGCTACTCCCCCTCTCCCGAACAATGGGATCGCTGATG
CGTTTGTCGACATACAGTGACTGGGTTCATGACAAGTACGAAGACGACAG
AGATGGTGCGACCTGTTCACCCGCATCGGACCAATCAGTAATGTTTCTCT
CGTTTACGACCGGGCAGGACGTTCCGAAGGAGTCGCCTTTGTGACCTACA
CTCATATCGGCGATGCGCGAACCGCGATTAGAGAATTCGACGGCGCAAAC
GCCAAAGGCCAGCCTATTCGTTTAACACTGATCTCTACCGGTGCCGGAAG
ACGCGACCGCAACCCATTTGACAACGTGGAACGCTCGAAGGGAAGTCTAT
TTGACCGCGTCGAGAGACCCCGTGACCGCGACGCACGGAGTCTCAGCCCC
GGTAGTAGGAGCGGCAGTCCTGATGGAGGTGCACGCCGCCGTCGTGGTCG
TCGCGGTGGTGGCGGCGGCGGGTACCGGCGCAGTGACGTCTCCAAACCGG
CTCCCGAGCACATTGACAGATACATTCCTGGTCAGCGGTCGCCGACTCGC
AACCGCGGCGCTACGAACGGGCGCCGCCAAGGCGGTGGAGGTGAGAACAA
GGGCGACAGCCGTCGCATGGTTAACGGACGGCCCAGAAAGACACAGGAAG
AGCTCGATCAAGAAATGGACGATTACTGGGGTGGCTCCGGCAACGCTGGT
GCCGGCGCAGCTGATAAAGAAGTTGTCCCTGACGAGCCTCAGCAGATTGC
ACCGGCGTCTGCGGCCGCTGCTGGTGATGATGATATCGACATGATTGAGT
GAACACAGCACTGCATCTAGCGGAGCTAAACTTCGTGTTGAGAACATCCA
TTACGACATTACAGAAACCGATCTCGAGCACGCCCTTCTCGTGCCCCCGA
CGTCCGCGTGGCGACCGCTACTCCCCCTCTCCCGAACAATGGGATCGCTG
ATGCGTTTGTCGACATACAGTGACTGGGTTCATGACAAGTACGAAGACGA
CAGAGATGGTGC
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CAN33_29290CAN33_29290Aspergillus niger FDAARGOS_311gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CAN33_29290-T1CAN33_29290-T1-proteinAspergillus niger FDAARGOS_311polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_29290-T1.cdsCAN33_29290-T1.cdsAspergillus niger FDAARGOS_311CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_29290-T1.exon4CAN33_29290-T1.exon4Aspergillus niger FDAARGOS_311exon
CAN33_29290-T1.exon3CAN33_29290-T1.exon3Aspergillus niger FDAARGOS_311exon
CAN33_29290-T1.exon2CAN33_29290-T1.exon2Aspergillus niger FDAARGOS_311exon
CAN33_29290-T1.exon1CAN33_29290-T1.exon1Aspergillus niger FDAARGOS_311exon


Properties
Property NameValue
DBxrefInterPro:IPR035979
DBxrefInterPro:IPR012677
DBxrefInterPro:IPR000504
DBxrefInterPro:IPR025715
DBxrefPFAM:PF00076
DBxrefPFAM:PF13865
ProductRNA recognition motif family protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger FDAARGOS_311 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NKJJ01000008.1supercontigNKJJ01000008.1:680705..681790 -
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