You are here

Home

CAN33_29430-T1, CAN33_29430-T1 (mRNA) Aspergillus niger FDAARGOS_311

Overview
NameCAN33_29430-T1
Unique NameCAN33_29430-T1
TypemRNA
OrganismAspergillus niger FDAARGOS_311
Sequences
The following sequences are available for this feature:

mRNA from alignment at NKJJ01000008.1:769752..771218+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>CAN33_29430-T1 ID=CAN33_29430-T1|Name=CAN33_29430-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=1467bp|location=Sequence derived from alignment at NKJJ01000008.1:769752..771218+ (Aspergillus niger FDAARGOS_311)
ATGCTCTCTGGTATCCTCATTTTCAACCAAAAGGGCGAGAACCTAATTTT
CCGCGCTTTCCGCAGCGACTGCCGCCCGCGCCTCGCCGACATCTTCCGCA
TCCAGGTCATCTCCAACCCTCAGGTCCGCTCGCCCATCCTCACCCTAGGC
TCCACGACTTTCAGTCATGTCAAACACGAGAACATCTACCTGGTCGCCGT
GACTAAGAGCAATGCCAATGCCGCGCTGGTCTTCGAATTCCTATACCGAC
TGGTTATGCTGGGAAAGAGCTATTTTGGGAAGCTCGATGAGGAGGCCGTG
AAGAACAACTTTGTCCTAATTTACGAATTGCTCGACGGTGCGCCTCACCT
GTGCTTTCGAGCATACAACCCACCTGAAAGATTGCTAAACCGCATTTGCC
TCTTTGATAGAAATCCTGGACTTCGGATACCCTCAAAACACCGAGACGGA
CACCTTGAAAATGTACATCACCACCGAAGGCGTCAAATCCGCCATTGCCA
ATTCCGCGACCGACTCCAGCCGTATTACCATGCAAGCCACTGGCGCTCTC
TCCTGGCGCCGTTCCGATGTCAAATACCGCAAGAATGAGGCCTTTGTCGA
CGTGATTGAAGACGTCAACCTCCTCATGTCCGCCACAGGCACCGTCCTTC
GCGCCGATGTCAACGGCCAAATCGTCATGCGAGCTTACCTCTCCGGCACC
CCAGAGTGCAAATTCGGCCTTAATGACCGCTTACTCCTCGATACCGACGC
TGCCGGCTCCTCCACCCCAGGCAACCGCGACGGCACGATGAAGGCTACCC
GCGCGGCCGCGGGCTCTGTCACCCTCGAAGACTGCCAATTTCACCAGTGC
GTCAAGCTGGGCCGCTTCGACGCCGATCGGATTATCTCCTTTGTGCCTCC
CGATGGCGAGTTTGAGCTCATGCGCTACCGCGCTACCGAAAACGTGAATT
TGCCCTTCAAGGTTCATCCGATTGTGCGTGAAGTCGGCACCACCAAAGTG
GAATACAGCGTCGCTATTAAAGCAAACTACAGCTCGAAATTATTCGCGAC
AAACGTTGTGATTCGCATTCCAACACCGCTGAACACCGCCAAGACGACGG
AACGGACCAGCCAGGGTCGGGCAAAGTACGAGCCGGAACATAATAACATT
GTGTGGAAGATTGCGCGGTTTTCCGGTGGAAGCGAATACGTCCTGACAGC
AGAAGCGACGTTGACGAGCATGACACACCAGAAGGCGTGGAGTCGGCCAC
CGCTCAGTCTATCATTCAGTCTTCTCATGTTCACCAGCAGTGGATTACTG
GTGCGGTACCTGAAGGTATTTGAGAAGAGCAACTATAGCAGTGTGAAGTG
GGTGCGGTACATGACTCGCGCGGGCAGTTATGAAATTCGGTACGTTTAAT
GCGAACTCCTTGCCTGAATTATTGTGGGGGTGACTGCTGTGCTAACTCCA
AGCGAAACAGATTCTAG
back to top

Coding sequence (CDS) from alignment at NKJJ01000008.1:769752..771218+

>CAN33_29430-T1 ID=CAN33_29430-T1|Name=CAN33_29430-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=3969bp|location=Sequence derived from alignment at NKJJ01000008.1:769752..771218+ (Aspergillus niger FDAARGOS_311)
ATGCTCTCTGGTATCCTCATTTTCAACCAAAAGGGCGAGAACCTAATTTT
CCGCGCTTTCCGCAGCGACTGCCGCCCGCGCCTCGCCGACATCTTCCGCA
TCCAGGTCATCTCCAACCCTCAGGTCCGCTCGCCCATCCTCACCCTAGGC
TCCACGACTTTCAGTCATGTCAAACACGAGAACATCTACCTGGTCGCCGT
GACTAAGAGCAATGCCAATGCCGCGCTGGTCTTCGAATTCCTATACCGAC
TGGTTATGCTGGGAAAGAGCTATTTTGGGAAGCTCGATGAGGAGGCCGTG
AAGAACAACTTTGTCCTAATTTACGAATTGCTCGACGAAATCCTGGACTT
CGGATACCCTCAAAACACCGAGACGGACACCTTGAAAATGTACATCACCA
CCGAAGGCGTCAAATCCGCCATTGCCAATTCCGCGACCGACTCCAGCCGT
ATTACCATGCAAGCCACTGGCGCTCTCTCCTGGCGCCGTTCCGATGTCAA
ATACCGCAAGAATGAGGCCTTTGTCGACGTGATTGAAGACGTCAACCTCC
TCATGTCCGCCACAGGCACCGTCCTTCGCGCCGATGTCAACGGCCAAATC
GTCATGCGAGCTTACCTCTCCGGCACCCCAGAGTGCAAATTCGGCCTTAA
TGACCGCTTACTCCTCGATACCGACGCTGCCGGCTCCTCCACCCCAGGCA
ACCGCGACGGCACGATGAAGGCTACCCGCGCGGCCGCGGGCTCTGTCACC
CTCGAAGACTGCCAATTTCACCAGTGCGTCAAGCTGGGCCGCTTCGACGC
CGATCGGATTATCTCCTTTGTGCCTCCCGATGGCGAGTTTGAGCTCATGC
GCTACCGCGCTACCGAAAACGTGAATTTGCCCTTCAAGGTTCATCCGATT
GTGCGTGAAGTCGGCACCACCAAAGTGGAATACAGCGTCGCTATTAAAGC
AAACTACAGCTCGAAATTATTCGCGACAAACGTTGTGATTCGCATTCCAA
CACCGCTGAACACCGCCAAGACGACGGAACGGACCAGCCAGGGTCGGGCA
AAGTACGAGCCGGAACATAATAACATTGTGTGGAAGATTGCGCGGTTTTC
CGGTGGAAGCGAATACGTCCTGACAGCAGAAGCGACGTTGACGAGCATGA
CACACCAGAAGGCGTGGAGTCGGCCACCGCTCAGTCTATCATTCAGTCTT
CTCATGTTCACCAGCAGTGGATTACTGGTGCGGTACCTGAAGGTATTTGA
GAAGAGCAACTATAGCAGTGTGAAGTGGGTGCGGTACATGACTCGCGCGG
GCAGTTATGAAATTCGATTCTAGATGCTCTCTGGTATCCTCATTTTCAAC
CAAAAGGGCGAGAACCTAATTTTCCGCGCTTTCCGCAGCGACTGCCGCCC
GCGCCTCGCCGACATCTTCCGCATCCAGGTCATCTCCAACCCTCAGGTCC
GCTCGCCCATCCTCACCCTAGGCTCCACGACTTTCAGTCATGTCAAACAC
GAGAACATCTACCTGGTCGCCGTGACTAAGAGCAATGCCAATGCCGCGCT
GGTCTTCGAATTCCTATACCGACTGGTTATGCTGGGAAAGAGCTATTTTG
GGAAGCTCGATGAGGAGGCCGTGAAGAACAACTTTGTCCTAATTTACGAA
TTGCTCGACGAAATCCTGGACTTCGGATACCCTCAAAACACCGAGACGGA
CACCTTGAAAATGTACATCACCACCGAAGGCGTCAAATCCGCCATTGCCA
ATTCCGCGACCGACTCCAGCCGTATTACCATGCAAGCCACTGGCGCTCTC
TCCTGGCGCCGTTCCGATGTCAAATACCGCAAGAATGAGGCCTTTGTCGA
CGTGATTGAAGACGTCAACCTCCTCATGTCCGCCACAGGCACCGTCCTTC
GCGCCGATGTCAACGGCCAAATCGTCATGCGAGCTTACCTCTCCGGCACC
CCAGAGTGCAAATTCGGCCTTAATGACCGCTTACTCCTCGATACCGACGC
TGCCGGCTCCTCCACCCCAGGCAACCGCGACGGCACGATGAAGGCTACCC
GCGCGGCCGCGGGCTCTGTCACCCTCGAAGACTGCCAATTTCACCAGTGC
GTCAAGCTGGGCCGCTTCGACGCCGATCGGATTATCTCCTTTGTGCCTCC
CGATGGCGAGTTTGAGCTCATGCGCTACCGCGCTACCGAAAACGTGAATT
TGCCCTTCAAGGTTCATCCGATTGTGCGTGAAGTCGGCACCACCAAAGTG
GAATACAGCGTCGCTATTAAAGCAAACTACAGCTCGAAATTATTCGCGAC
AAACGTTGTGATTCGCATTCCAACACCGCTGAACACCGCCAAGACGACGG
AACGGACCAGCCAGGGTCGGGCAAAGTACGAGCCGGAACATAATAACATT
GTGTGGAAGATTGCGCGGTTTTCCGGTGGAAGCGAATACGTCCTGACAGC
AGAAGCGACGTTGACGAGCATGACACACCAGAAGGCGTGGAGTCGGCCAC
CGCTCAGTCTATCATTCAGTCTTCTCATGTTCACCAGCAGTGGATTACTG
GTGCGGTACCTGAAGGTATTTGAGAAGAGCAACTATAGCAGTGTGAAGTG
GGTGCGGTACATGACTCGCGCGGGCAGTTATGAAATTCGATTCTAGATGC
TCTCTGGTATCCTCATTTTCAACCAAAAGGGCGAGAACCTAATTTTCCGC
GCTTTCCGCAGCGACTGCCGCCCGCGCCTCGCCGACATCTTCCGCATCCA
GGTCATCTCCAACCCTCAGGTCCGCTCGCCCATCCTCACCCTAGGCTCCA
CGACTTTCAGTCATGTCAAACACGAGAACATCTACCTGGTCGCCGTGACT
AAGAGCAATGCCAATGCCGCGCTGGTCTTCGAATTCCTATACCGACTGGT
TATGCTGGGAAAGAGCTATTTTGGGAAGCTCGATGAGGAGGCCGTGAAGA
ACAACTTTGTCCTAATTTACGAATTGCTCGACGAAATCCTGGACTTCGGA
TACCCTCAAAACACCGAGACGGACACCTTGAAAATGTACATCACCACCGA
AGGCGTCAAATCCGCCATTGCCAATTCCGCGACCGACTCCAGCCGTATTA
CCATGCAAGCCACTGGCGCTCTCTCCTGGCGCCGTTCCGATGTCAAATAC
CGCAAGAATGAGGCCTTTGTCGACGTGATTGAAGACGTCAACCTCCTCAT
GTCCGCCACAGGCACCGTCCTTCGCGCCGATGTCAACGGCCAAATCGTCA
TGCGAGCTTACCTCTCCGGCACCCCAGAGTGCAAATTCGGCCTTAATGAC
CGCTTACTCCTCGATACCGACGCTGCCGGCTCCTCCACCCCAGGCAACCG
CGACGGCACGATGAAGGCTACCCGCGCGGCCGCGGGCTCTGTCACCCTCG
AAGACTGCCAATTTCACCAGTGCGTCAAGCTGGGCCGCTTCGACGCCGAT
CGGATTATCTCCTTTGTGCCTCCCGATGGCGAGTTTGAGCTCATGCGCTA
CCGCGCTACCGAAAACGTGAATTTGCCCTTCAAGGTTCATCCGATTGTGC
GTGAAGTCGGCACCACCAAAGTGGAATACAGCGTCGCTATTAAAGCAAAC
TACAGCTCGAAATTATTCGCGACAAACGTTGTGATTCGCATTCCAACACC
GCTGAACACCGCCAAGACGACGGAACGGACCAGCCAGGGTCGGGCAAAGT
ACGAGCCGGAACATAATAACATTGTGTGGAAGATTGCGCGGTTTTCCGGT
GGAAGCGAATACGTCCTGACAGCAGAAGCGACGTTGACGAGCATGACACA
CCAGAAGGCGTGGAGTCGGCCACCGCTCAGTCTATCATTCAGTCTTCTCA
TGTTCACCAGCAGTGGATTACTGGTGCGGTACCTGAAGGTATTTGAGAAG
AGCAACTATAGCAGTGTGAAGTGGGTGCGGTACATGACTCGCGCGGGCAG
TTATGAAATTCGATTCTAG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0030131clathrin adaptor complex
Vocabulary: Biological Process
TermDefinition
GO:0016192vesicle-mediated transport
GO:0006886intracellular protein transport
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CAN33_29430CAN33_29430Aspergillus niger FDAARGOS_311gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_29430-T1.exon1CAN33_29430-T1.exon1Aspergillus niger FDAARGOS_311exon
CAN33_29430-T1.exon2CAN33_29430-T1.exon2Aspergillus niger FDAARGOS_311exon
CAN33_29430-T1.exon3CAN33_29430-T1.exon3Aspergillus niger FDAARGOS_311exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_29430-T1.cdsCAN33_29430-T1.cdsAspergillus niger FDAARGOS_311CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CAN33_29430-T1CAN33_29430-T1-proteinAspergillus niger FDAARGOS_311polypeptide


Properties
Property NameValue
DBxrefInterPro:IPR036168
DBxrefInterPro:IPR011012
DBxrefInterPro:IPR028565
DBxrefInterPro:IPR022775
DBxrefInterPro:IPR001392
DBxrefPFAM:PF01217
DBxrefPFAM:PF00928
ProductAdaptor complexes medium subunit family protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger FDAARGOS_311 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NKJJ01000008.1supercontigNKJJ01000008.1:769752..771218 +
Powered by Drupal