You are here

Home

CAN33_35055-T1, CAN33_35055-T1 (mRNA) Aspergillus niger FDAARGOS_311

Overview
NameCAN33_35055-T1
Unique NameCAN33_35055-T1
TypemRNA
OrganismAspergillus niger FDAARGOS_311
Sequences
The following sequences are available for this feature:

mRNA from alignment at NKJJ01000007.1:1327242..1329314-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>CAN33_35055-T1 ID=CAN33_35055-T1|Name=CAN33_35055-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=2073bp|location=Sequence derived from alignment at NKJJ01000007.1:1327242..1329314- (Aspergillus niger FDAARGOS_311)
ATGTCCCACGAAGAGGATCTCATCGACTACTCCGACGAGGAGCTTCAGAC
CACTGACGCGGCGGCCACCACCGCTGCTCCCGCCTCTAACGGAGAGGCTA
AGAAGGGCGACTTGACGGTTTCTGGCGGCCGTCCGGACAAGAAGGGTAGT
TACGTCGGTATCCATTCGACCGGTTTCCGCGACTTTTTGCTCAAAGAGGA
ACTCCTACGTGCCATCACCGATTGCGGTTTCGAACATCCATCGGAGGGTT
AGTCTATCACGTATTCTTTCCCAAAGCTCCCTCCATTGCTCCATGTTCCA
ACGTCCGTCCATCTCCGCGGGGAAAATCCATAGTCGTTTTGGGGCGCCCA
TCTCGCCTCAGCTTGCGGGTGGCATGAGGATGTCTGTTTCGCGTCATACA
TAAGACGAGTCGCCCTGCGGCAGTAGTGCATCTACAGCCTTTGCTTGTTT
GCTTCACTTTACTCTGGTGAATTACGGCAACACCATGCTCAGGGAATACC
ACAGATTGGTTTGTTCGCCTGCAGAGATTCTGGATGAATCGTGGTTTGCT
TCCGAAGAACACGGGTCGGACGCTTTTCCACCGTTCTCTGAATTGCAGCC
GTCCTCCTGCCGCCTGCAGAAAGAGCTCTGAACAAGATGTCTTACTGCAG
CTGACACAATTTTCGACTGTGTGCAAGTTCATTTGACTTTCGTTGTTTGG
TGGAAGAAAATGTGGGACTATAATGCATCCCTTCAGACTCAAAACCTCGG
GGATGGACGGACGCTGCGACGCGAATTGCTTTTTCTCTTTCTCAAAACTT
ATGGGTCGAGTACAAGTCTAACATACGGTTCCGCCTCACTACAGTCCAGC
AAGTCTGCATTCCTACCGCCATTCTGAACGTCGATGTTCTCTGCCAGGCC
AAGTCTGGTCTCGGAAAGACCGCGGTCTTCGTTTTGACCACTCTGCACCA
GCTGGAGCCGGTTCCTGGCGAGTGCTCTATCCTTGTTATGTGCCACACCC
GCGAGTTGGCATACCAGATCAAGAACGAGTACGCTCGTTTCAGCAAGTAC
CTTCCTGATGTCAAGACTGCTGTCTTCTACGGAGGTACCCCTATTCAGAA
GGACGTTGAATTGCTATCCAACAAGGAGTCCTACCCCAACATTGTTGTTG
GTACTCCTGGTCGTCTGAACGCCTTGGTCCGTGACAAGAAGCTTTCTCTG
CGCAACGTCAAGGCTTTCGTTCTCGACGAGTGTGATAAGATGCTGGACCA
GATCGGTGAGTTTATTTATGTGAGGTTATCTTACGCCGTACTGATGATTC
GTAATAGACATGCGTCGTGATGTCCAGGAGATCTTCCGTGCCACCCCTGC
CGACAAGCAGGTTATGATGTTCAGTGCCACTCTTTCTCAGGAGATCCGCC
CCGTGTGCAAGAAGTTCATGAGGAACCCTCTCGAGGTCTACGTCGATGAC
GACACGAAGCTCACGCTGCACGGTCTGCAGCAATATTACATTAAGCTCAG
CGAAGCGGAGAAGAACCGCAAGCTGAACGAGCTCCTGGATAGCCTGGAGT
TCAACCAGGTTATCATCTTCGTCAAGAGCACCCTGCGTGCGAATGAGCTC
GACAAGCTGTTGCGCGAGTGCAACTTCCCCAGTATTGCGGTGCACTCTGG
TGTGAGCCAGGAGGAGCGGTAAGAGTACTTGTTATTCATGTCTTTACTAT
GTACTAACGGTTGGTAGTATCAAACGCTACAAGGAGTTCAAGGAATTCAA
CAAGCGTATCTGTGTTGCGACCGACGTGTTCGGACGTGGTATCGATATTG
AGCGTATCAACCTTGCCATCAACTACGACTTGCCGGCTGATGCCGACTCC
TACCTGCACCGTGTCGGTCGTGCGGGTCGTTTCGGTACCAAGGGTCTGTC
GATTTCTTTTGTCAGCACCGAGGATGACGAGAAGGTGCTCAAGGACATCG
AGAAGCGCTTCGAGGTTGCCCTTCCGTAAGTACAGACCGATGCTTATAAC
CATGCGGGCGAAGCTAATGAATACCAGTGAATACCCCGAGGGCGGCGTCG
ACTCGAGCACTTACATGGCCTAG
back to top

Coding sequence (CDS) from alignment at NKJJ01000007.1:1327242..1329314-

>CAN33_35055-T1 ID=CAN33_35055-T1|Name=CAN33_35055-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=6615bp|location=Sequence derived from alignment at NKJJ01000007.1:1327242..1329314- (Aspergillus niger FDAARGOS_311)
TGAATACCCCGAGGGCGGCGTCGACTCGAGCACTTACATGGCCTAGTATC
AAACGCTACAAGGAGTTCAAGGAATTCAACAAGCGTATCTGTGTTGCGAC
CGACGTGTTCGGACGTGGTATCGATATTGAGCGTATCAACCTTGCCATCA
ACTACGACTTGCCGGCTGATGCCGACTCCTACCTGCACCGTGTCGGTCGT
GCGGGTCGTTTCGGTACCAAGGGTCTGTCGATTTCTTTTGTCAGCACCGA
GGATGACGAGAAGGTGCTCAAGGACATCGAGAAGCGCTTCGAGGTTGCCC
TTCCACATGCGTCGTGATGTCCAGGAGATCTTCCGTGCCACCCCTGCCGA
CAAGCAGGTTATGATGTTCAGTGCCACTCTTTCTCAGGAGATCCGCCCCG
TGTGCAAGAAGTTCATGAGGAACCCTCTCGAGGTCTACGTCGATGACGAC
ACGAAGCTCACGCTGCACGGTCTGCAGCAATATTACATTAAGCTCAGCGA
AGCGGAGAAGAACCGCAAGCTGAACGAGCTCCTGGATAGCCTGGAGTTCA
ACCAGGTTATCATCTTCGTCAAGAGCACCCTGCGTGCGAATGAGCTCGAC
AAGCTGTTGCGCGAGTGCAACTTCCCCAGTATTGCGGTGCACTCTGGTGT
GAGCCAGGAGGAGCGTCCAGCAAGTCTGCATTCCTACCGCCATTCTGAAC
GTCGATGTTCTCTGCCAGGCCAAGTCTGGTCTCGGAAAGACCGCGGTCTT
CGTTTTGACCACTCTGCACCAGCTGGAGCCGGTTCCTGGCGAGTGCTCTA
TCCTTGTTATGTGCCACACCCGCGAGTTGGCATACCAGATCAAGAACGAG
TACGCTCGTTTCAGCAAGTACCTTCCTGATGTCAAGACTGCTGTCTTCTA
CGGAGGTACCCCTATTCAGAAGGACGTTGAATTGCTATCCAACAAGGAGT
CCTACCCCAACATTGTTGTTGGTACTCCTGGTCGTCTGAACGCCTTGGTC
CGTGACAAGAAGCTTTCTCTGCGCAACGTCAAGGCTTTCGTTCTCGACGA
GTGTGATAAGATGCTGGACCAGATCGATGTCCCACGAAGAGGATCTCATC
GACTACTCCGACGAGGAGCTTCAGACCACTGACGCGGCGGCCACCACCGC
TGCTCCCGCCTCTAACGGAGAGGCTAAGAAGGGCGACTTGACGGTTTCTG
GCGGCCGTCCGGACAAGAAGGGTAGTTACGTCGGTATCCATTCGACCGGT
TTCCGCGACTTTTTGCTCAAAGAGGAACTCCTACGTGCCATCACCGATTG
CGGTTTCGAACATCCATCGGAGGTGAATACCCCGAGGGCGGCGTCGACTC
GAGCACTTACATGGCCTAGTATCAAACGCTACAAGGAGTTCAAGGAATTC
AACAAGCGTATCTGTGTTGCGACCGACGTGTTCGGACGTGGTATCGATAT
TGAGCGTATCAACCTTGCCATCAACTACGACTTGCCGGCTGATGCCGACT
CCTACCTGCACCGTGTCGGTCGTGCGGGTCGTTTCGGTACCAAGGGTCTG
TCGATTTCTTTTGTCAGCACCGAGGATGACGAGAAGGTGCTCAAGGACAT
CGAGAAGCGCTTCGAGGTTGCCCTTCCACATGCGTCGTGATGTCCAGGAG
ATCTTCCGTGCCACCCCTGCCGACAAGCAGGTTATGATGTTCAGTGCCAC
TCTTTCTCAGGAGATCCGCCCCGTGTGCAAGAAGTTCATGAGGAACCCTC
TCGAGGTCTACGTCGATGACGACACGAAGCTCACGCTGCACGGTCTGCAG
CAATATTACATTAAGCTCAGCGAAGCGGAGAAGAACCGCAAGCTGAACGA
GCTCCTGGATAGCCTGGAGTTCAACCAGGTTATCATCTTCGTCAAGAGCA
CCCTGCGTGCGAATGAGCTCGACAAGCTGTTGCGCGAGTGCAACTTCCCC
AGTATTGCGGTGCACTCTGGTGTGAGCCAGGAGGAGCGTCCAGCAAGTCT
GCATTCCTACCGCCATTCTGAACGTCGATGTTCTCTGCCAGGCCAAGTCT
GGTCTCGGAAAGACCGCGGTCTTCGTTTTGACCACTCTGCACCAGCTGGA
GCCGGTTCCTGGCGAGTGCTCTATCCTTGTTATGTGCCACACCCGCGAGT
TGGCATACCAGATCAAGAACGAGTACGCTCGTTTCAGCAAGTACCTTCCT
GATGTCAAGACTGCTGTCTTCTACGGAGGTACCCCTATTCAGAAGGACGT
TGAATTGCTATCCAACAAGGAGTCCTACCCCAACATTGTTGTTGGTACTC
CTGGTCGTCTGAACGCCTTGGTCCGTGACAAGAAGCTTTCTCTGCGCAAC
GTCAAGGCTTTCGTTCTCGACGAGTGTGATAAGATGCTGGACCAGATCGA
TGTCCCACGAAGAGGATCTCATCGACTACTCCGACGAGGAGCTTCAGACC
ACTGACGCGGCGGCCACCACCGCTGCTCCCGCCTCTAACGGAGAGGCTAA
GAAGGGCGACTTGACGGTTTCTGGCGGCCGTCCGGACAAGAAGGGTAGTT
ACGTCGGTATCCATTCGACCGGTTTCCGCGACTTTTTGCTCAAAGAGGAA
CTCCTACGTGCCATCACCGATTGCGGTTTCGAACATCCATCGGAGGTGAA
TACCCCGAGGGCGGCGTCGACTCGAGCACTTACATGGCCTAGTATCAAAC
GCTACAAGGAGTTCAAGGAATTCAACAAGCGTATCTGTGTTGCGACCGAC
GTGTTCGGACGTGGTATCGATATTGAGCGTATCAACCTTGCCATCAACTA
CGACTTGCCGGCTGATGCCGACTCCTACCTGCACCGTGTCGGTCGTGCGG
GTCGTTTCGGTACCAAGGGTCTGTCGATTTCTTTTGTCAGCACCGAGGAT
GACGAGAAGGTGCTCAAGGACATCGAGAAGCGCTTCGAGGTTGCCCTTCC
ACATGCGTCGTGATGTCCAGGAGATCTTCCGTGCCACCCCTGCCGACAAG
CAGGTTATGATGTTCAGTGCCACTCTTTCTCAGGAGATCCGCCCCGTGTG
CAAGAAGTTCATGAGGAACCCTCTCGAGGTCTACGTCGATGACGACACGA
AGCTCACGCTGCACGGTCTGCAGCAATATTACATTAAGCTCAGCGAAGCG
GAGAAGAACCGCAAGCTGAACGAGCTCCTGGATAGCCTGGAGTTCAACCA
GGTTATCATCTTCGTCAAGAGCACCCTGCGTGCGAATGAGCTCGACAAGC
TGTTGCGCGAGTGCAACTTCCCCAGTATTGCGGTGCACTCTGGTGTGAGC
CAGGAGGAGCGTCCAGCAAGTCTGCATTCCTACCGCCATTCTGAACGTCG
ATGTTCTCTGCCAGGCCAAGTCTGGTCTCGGAAAGACCGCGGTCTTCGTT
TTGACCACTCTGCACCAGCTGGAGCCGGTTCCTGGCGAGTGCTCTATCCT
TGTTATGTGCCACACCCGCGAGTTGGCATACCAGATCAAGAACGAGTACG
CTCGTTTCAGCAAGTACCTTCCTGATGTCAAGACTGCTGTCTTCTACGGA
GGTACCCCTATTCAGAAGGACGTTGAATTGCTATCCAACAAGGAGTCCTA
CCCCAACATTGTTGTTGGTACTCCTGGTCGTCTGAACGCCTTGGTCCGTG
ACAAGAAGCTTTCTCTGCGCAACGTCAAGGCTTTCGTTCTCGACGAGTGT
GATAAGATGCTGGACCAGATCGATGTCCCACGAAGAGGATCTCATCGACT
ACTCCGACGAGGAGCTTCAGACCACTGACGCGGCGGCCACCACCGCTGCT
CCCGCCTCTAACGGAGAGGCTAAGAAGGGCGACTTGACGGTTTCTGGCGG
CCGTCCGGACAAGAAGGGTAGTTACGTCGGTATCCATTCGACCGGTTTCC
GCGACTTTTTGCTCAAAGAGGAACTCCTACGTGCCATCACCGATTGCGGT
TTCGAACATCCATCGGAGGTGAATACCCCGAGGGCGGCGTCGACTCGAGC
ACTTACATGGCCTAGTATCAAACGCTACAAGGAGTTCAAGGAATTCAACA
AGCGTATCTGTGTTGCGACCGACGTGTTCGGACGTGGTATCGATATTGAG
CGTATCAACCTTGCCATCAACTACGACTTGCCGGCTGATGCCGACTCCTA
CCTGCACCGTGTCGGTCGTGCGGGTCGTTTCGGTACCAAGGGTCTGTCGA
TTTCTTTTGTCAGCACCGAGGATGACGAGAAGGTGCTCAAGGACATCGAG
AAGCGCTTCGAGGTTGCCCTTCCACATGCGTCGTGATGTCCAGGAGATCT
TCCGTGCCACCCCTGCCGACAAGCAGGTTATGATGTTCAGTGCCACTCTT
TCTCAGGAGATCCGCCCCGTGTGCAAGAAGTTCATGAGGAACCCTCTCGA
GGTCTACGTCGATGACGACACGAAGCTCACGCTGCACGGTCTGCAGCAAT
ATTACATTAAGCTCAGCGAAGCGGAGAAGAACCGCAAGCTGAACGAGCTC
CTGGATAGCCTGGAGTTCAACCAGGTTATCATCTTCGTCAAGAGCACCCT
GCGTGCGAATGAGCTCGACAAGCTGTTGCGCGAGTGCAACTTCCCCAGTA
TTGCGGTGCACTCTGGTGTGAGCCAGGAGGAGCGTCCAGCAAGTCTGCAT
TCCTACCGCCATTCTGAACGTCGATGTTCTCTGCCAGGCCAAGTCTGGTC
TCGGAAAGACCGCGGTCTTCGTTTTGACCACTCTGCACCAGCTGGAGCCG
GTTCCTGGCGAGTGCTCTATCCTTGTTATGTGCCACACCCGCGAGTTGGC
ATACCAGATCAAGAACGAGTACGCTCGTTTCAGCAAGTACCTTCCTGATG
TCAAGACTGCTGTCTTCTACGGAGGTACCCCTATTCAGAAGGACGTTGAA
TTGCTATCCAACAAGGAGTCCTACCCCAACATTGTTGTTGGTACTCCTGG
TCGTCTGAACGCCTTGGTCCGTGACAAGAAGCTTTCTCTGCGCAACGTCA
AGGCTTTCGTTCTCGACGAGTGTGATAAGATGCTGGACCAGATCGATGTC
CCACGAAGAGGATCTCATCGACTACTCCGACGAGGAGCTTCAGACCACTG
ACGCGGCGGCCACCACCGCTGCTCCCGCCTCTAACGGAGAGGCTAAGAAG
GGCGACTTGACGGTTTCTGGCGGCCGTCCGGACAAGAAGGGTAGTTACGT
CGGTATCCATTCGACCGGTTTCCGCGACTTTTTGCTCAAAGAGGAACTCC
TACGTGCCATCACCGATTGCGGTTTCGAACATCCATCGGAGGTGAATACC
CCGAGGGCGGCGTCGACTCGAGCACTTACATGGCCTAGTATCAAACGCTA
CAAGGAGTTCAAGGAATTCAACAAGCGTATCTGTGTTGCGACCGACGTGT
TCGGACGTGGTATCGATATTGAGCGTATCAACCTTGCCATCAACTACGAC
TTGCCGGCTGATGCCGACTCCTACCTGCACCGTGTCGGTCGTGCGGGTCG
TTTCGGTACCAAGGGTCTGTCGATTTCTTTTGTCAGCACCGAGGATGACG
AGAAGGTGCTCAAGGACATCGAGAAGCGCTTCGAGGTTGCCCTTCCACAT
GCGTCGTGATGTCCAGGAGATCTTCCGTGCCACCCCTGCCGACAAGCAGG
TTATGATGTTCAGTGCCACTCTTTCTCAGGAGATCCGCCCCGTGTGCAAG
AAGTTCATGAGGAACCCTCTCGAGGTCTACGTCGATGACGACACGAAGCT
CACGCTGCACGGTCTGCAGCAATATTACATTAAGCTCAGCGAAGCGGAGA
AGAACCGCAAGCTGAACGAGCTCCTGGATAGCCTGGAGTTCAACCAGGTT
ATCATCTTCGTCAAGAGCACCCTGCGTGCGAATGAGCTCGACAAGCTGTT
GCGCGAGTGCAACTTCCCCAGTATTGCGGTGCACTCTGGTGTGAGCCAGG
AGGAGCGTCCAGCAAGTCTGCATTCCTACCGCCATTCTGAACGTCGATGT
TCTCTGCCAGGCCAAGTCTGGTCTCGGAAAGACCGCGGTCTTCGTTTTGA
CCACTCTGCACCAGCTGGAGCCGGTTCCTGGCGAGTGCTCTATCCTTGTT
ATGTGCCACACCCGCGAGTTGGCATACCAGATCAAGAACGAGTACGCTCG
TTTCAGCAAGTACCTTCCTGATGTCAAGACTGCTGTCTTCTACGGAGGTA
CCCCTATTCAGAAGGACGTTGAATTGCTATCCAACAAGGAGTCCTACCCC
AACATTGTTGTTGGTACTCCTGGTCGTCTGAACGCCTTGGTCCGTGACAA
GAAGCTTTCTCTGCGCAACGTCAAGGCTTTCGTTCTCGACGAGTGTGATA
AGATGCTGGACCAGATCGATGTCCCACGAAGAGGATCTCATCGACTACTC
CGACGAGGAGCTTCAGACCACTGACGCGGCGGCCACCACCGCTGCTCCCG
CCTCTAACGGAGAGGCTAAGAAGGGCGACTTGACGGTTTCTGGCGGCCGT
CCGGACAAGAAGGGTAGTTACGTCGGTATCCATTCGACCGGTTTCCGCGA
CTTTTTGCTCAAAGAGGAACTCCTACGTGCCATCACCGATTGCGGTTTCG
AACATCCATCGGAGG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
GO:0003676nucleic acid binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
SUB2CAN33_35055Aspergillus niger FDAARGOS_311gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CAN33_35055-T1CAN33_35055-T1-proteinAspergillus niger FDAARGOS_311polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_35055-T1.cdsCAN33_35055-T1.cdsAspergillus niger FDAARGOS_311CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_35055-T1.exon5CAN33_35055-T1.exon5Aspergillus niger FDAARGOS_311exon
CAN33_35055-T1.exon4CAN33_35055-T1.exon4Aspergillus niger FDAARGOS_311exon
CAN33_35055-T1.exon3CAN33_35055-T1.exon3Aspergillus niger FDAARGOS_311exon
CAN33_35055-T1.exon2CAN33_35055-T1.exon2Aspergillus niger FDAARGOS_311exon
CAN33_35055-T1.exon1CAN33_35055-T1.exon1Aspergillus niger FDAARGOS_311exon


Properties
Property NameValue
NoteBUSCO:EOG09262E4Q
DBxrefInterPro:IPR027417
DBxrefInterPro:IPR014014
DBxrefInterPro:IPR011545
DBxrefInterPro:IPR001650
DBxrefInterPro:IPR014001
DBxrefPFAM:PF04851
DBxrefPFAM:PF00271
DBxrefPFAM:PF00270
ProductSuppressor of the cold-sensitive snRNP bioproteinsis mutant brr1-1
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger FDAARGOS_311 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NKJJ01000007.1supercontigNKJJ01000007.1:1327242..1329314 -
Powered by Drupal