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CAN33_38300-T1, CAN33_38300-T1 (mRNA) Aspergillus niger FDAARGOS_311

Overview
NameCAN33_38300-T1
Unique NameCAN33_38300-T1
TypemRNA
OrganismAspergillus niger FDAARGOS_311
Sequences
The following sequences are available for this feature:

mRNA from alignment at NKJJ01000017.1:1359145..1360238+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>CAN33_38300-T1 ID=CAN33_38300-T1|Name=CAN33_38300-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=1094bp|location=Sequence derived from alignment at NKJJ01000017.1:1359145..1360238+ (Aspergillus niger FDAARGOS_311)
ATGTCTGACTCACTATATCTACGGAATCGGACGATCATGAAACGCAAATC
GACAGTGAGGGCCCGAAGGCGGTGAAGCACGTGACAGAAAACTGCCCTTG
CGGCTAGCGACACTTTACCGTTTCGAGCTTCCCACCATTTGAAAACTTCT
CCGGACTCCGAGATCCAGGTCGACCGCAACAACAGCAATTAAAGATGTCT
TTCCGTGGAGGCCGTGGCGGTTTCGGTGGCCGTGGAGGTGAGCTCTAGCA
ACATAAGAGGTTGATCGCAACGCTGGGTATGAGCTAACGAAAATTTTGTC
GGATAGGTCGCGGAGGTTTCCAGCAACCTCTCGGTCCCCCTGCCCAAGTT
CTGGGTAATTATACGCCAAAATGCGACTGGAGTGATTGGGACTAACGCGG
AATAACTAGAGATGGGAACTGTCATGCATTCTTGCGAAGGCGAGATGGTT
TGCGAATCGATCAACCCCAAGATTCCTTACTTCAACGCCCCCATCTACCT
CGAGAACAAGGTATGCTCGACCTAGCTACTCTCCGCAAACTCGCGATGCG
CTAACGCAATTCTTTAATAGACCCCTATCGGCAAGGTCGATGAAGTCCTG
GGCCCTATCAACCAGGTCTACTTCACCATCAAGCCCCAGGAAGGAATTGT
CGCGACCTCCTTCAAGCCTGGTGACAAGGTCTACATTGGTGGCGACAAGC
TCCTTCCCTTGGAGAAGTATGTTGCGAGTTGTTCTTGATCATGATGGAAA
CTTGTCTAACTTTGCAAAACTAGGTTCCTTCCCAAGCCCAAGCCCGCTCC
CGGTATGATTTCACTCGCTTCGCGCAACAATCCAATGTGCTTGATCCTAA
CCAGAATACAGGTGCTGCCAAGCCCAAGAGAGCTGGTGGTGGTGCCCGAG
GCGGTCCCATGCGCGGTGGCCGTGGTGGTGGCCGTGGTGGCCCCATGCGT
GGTGGTCGCGGCGGCGCTCCCAGAGGACGCGGTGGCCCCCGCGGTGGTGG
CTTCCGTGGTGGTGGCGGTGGTGGTTTCGGCGGTGGTTTCTCGAGGGGTG
GTGGCAGAGGAGGACCTCGTGGTGGAGGCTTCCGAGGACGGTAG
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Coding sequence (CDS) from alignment at NKJJ01000017.1:1359145..1360238+

>CAN33_38300-T1 ID=CAN33_38300-T1|Name=CAN33_38300-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=3654bp|location=Sequence derived from alignment at NKJJ01000017.1:1359145..1360238+ (Aspergillus niger FDAARGOS_311)
ATGTCTGACTCACTATATCTACGGAATCGGACGATCATGAAACGCAAATC
GACAGTCGCGGAGGTTTCCAGCAACCTCTCGGTCCCCCTGCCCAAGTTCT
GGATGGGAACTGTCATGCATTCTTGCGAAGGCGAGATGGTTTGCGAATCG
ATCAACCCCAAGATTCCTTACTTCAACGCCCCCATCTACCTCGAGAACAA
GACCCCTATCGGCAAGGTCGATGAAGTCCTGGGCCCTATCAACCAGGTCT
ACTTCACCATCAAGCCCCAGGAAGGAATTGTCGCGACCTCCTTCAAGCCT
GGTGACAAGGTCTACATTGGTGGCGACAAGCTCCTTCCCTTGGAGAAGTT
CCTTCCCAAGCCCAAGCCCGCTCCCGGTGCTGCCAAGCCCAAGAGAGCTG
GTGGTGGTGCCCGAGGCGGTCCCATGCGCGGTGGCCGTGGTGGTGGCCGT
GGTGGCCCCATGCGTGGTGGTCGCGGCGGCGCTCCCAGAGGACGCGGTGG
CCCCCGCGGTGGTGGCTTCCGTGGTGGTGGCGGTGGTGGTTTCGGCGGTG
GTTTCTCGAGGGGTGGTGGCAGAGGAGGACCTCGTGGTGGAGGCTTCCGA
GGACGGTAGATGTCTGACTCACTATATCTACGGAATCGGACGATCATGAA
ACGCAAATCGACAGTCGCGGAGGTTTCCAGCAACCTCTCGGTCCCCCTGC
CCAAGTTCTGGATGGGAACTGTCATGCATTCTTGCGAAGGCGAGATGGTT
TGCGAATCGATCAACCCCAAGATTCCTTACTTCAACGCCCCCATCTACCT
CGAGAACAAGACCCCTATCGGCAAGGTCGATGAAGTCCTGGGCCCTATCA
ACCAGGTCTACTTCACCATCAAGCCCCAGGAAGGAATTGTCGCGACCTCC
TTCAAGCCTGGTGACAAGGTCTACATTGGTGGCGACAAGCTCCTTCCCTT
GGAGAAGTTCCTTCCCAAGCCCAAGCCCGCTCCCGGTGCTGCCAAGCCCA
AGAGAGCTGGTGGTGGTGCCCGAGGCGGTCCCATGCGCGGTGGCCGTGGT
GGTGGCCGTGGTGGCCCCATGCGTGGTGGTCGCGGCGGCGCTCCCAGAGG
ACGCGGTGGCCCCCGCGGTGGTGGCTTCCGTGGTGGTGGCGGTGGTGGTT
TCGGCGGTGGTTTCTCGAGGGGTGGTGGCAGAGGAGGACCTCGTGGTGGA
GGCTTCCGAGGACGGTAGATGTCTGACTCACTATATCTACGGAATCGGAC
GATCATGAAACGCAAATCGACAGTCGCGGAGGTTTCCAGCAACCTCTCGG
TCCCCCTGCCCAAGTTCTGGATGGGAACTGTCATGCATTCTTGCGAAGGC
GAGATGGTTTGCGAATCGATCAACCCCAAGATTCCTTACTTCAACGCCCC
CATCTACCTCGAGAACAAGACCCCTATCGGCAAGGTCGATGAAGTCCTGG
GCCCTATCAACCAGGTCTACTTCACCATCAAGCCCCAGGAAGGAATTGTC
GCGACCTCCTTCAAGCCTGGTGACAAGGTCTACATTGGTGGCGACAAGCT
CCTTCCCTTGGAGAAGTTCCTTCCCAAGCCCAAGCCCGCTCCCGGTGCTG
CCAAGCCCAAGAGAGCTGGTGGTGGTGCCCGAGGCGGTCCCATGCGCGGT
GGCCGTGGTGGTGGCCGTGGTGGCCCCATGCGTGGTGGTCGCGGCGGCGC
TCCCAGAGGACGCGGTGGCCCCCGCGGTGGTGGCTTCCGTGGTGGTGGCG
GTGGTGGTTTCGGCGGTGGTTTCTCGAGGGGTGGTGGCAGAGGAGGACCT
CGTGGTGGAGGCTTCCGAGGACGGTAGATGTCTGACTCACTATATCTACG
GAATCGGACGATCATGAAACGCAAATCGACAGTCGCGGAGGTTTCCAGCA
ACCTCTCGGTCCCCCTGCCCAAGTTCTGGATGGGAACTGTCATGCATTCT
TGCGAAGGCGAGATGGTTTGCGAATCGATCAACCCCAAGATTCCTTACTT
CAACGCCCCCATCTACCTCGAGAACAAGACCCCTATCGGCAAGGTCGATG
AAGTCCTGGGCCCTATCAACCAGGTCTACTTCACCATCAAGCCCCAGGAA
GGAATTGTCGCGACCTCCTTCAAGCCTGGTGACAAGGTCTACATTGGTGG
CGACAAGCTCCTTCCCTTGGAGAAGTTCCTTCCCAAGCCCAAGCCCGCTC
CCGGTGCTGCCAAGCCCAAGAGAGCTGGTGGTGGTGCCCGAGGCGGTCCC
ATGCGCGGTGGCCGTGGTGGTGGCCGTGGTGGCCCCATGCGTGGTGGTCG
CGGCGGCGCTCCCAGAGGACGCGGTGGCCCCCGCGGTGGTGGCTTCCGTG
GTGGTGGCGGTGGTGGTTTCGGCGGTGGTTTCTCGAGGGGTGGTGGCAGA
GGAGGACCTCGTGGTGGAGGCTTCCGAGGACGGTAGATGTCTGACTCACT
ATATCTACGGAATCGGACGATCATGAAACGCAAATCGACAGTCGCGGAGG
TTTCCAGCAACCTCTCGGTCCCCCTGCCCAAGTTCTGGATGGGAACTGTC
ATGCATTCTTGCGAAGGCGAGATGGTTTGCGAATCGATCAACCCCAAGAT
TCCTTACTTCAACGCCCCCATCTACCTCGAGAACAAGACCCCTATCGGCA
AGGTCGATGAAGTCCTGGGCCCTATCAACCAGGTCTACTTCACCATCAAG
CCCCAGGAAGGAATTGTCGCGACCTCCTTCAAGCCTGGTGACAAGGTCTA
CATTGGTGGCGACAAGCTCCTTCCCTTGGAGAAGTTCCTTCCCAAGCCCA
AGCCCGCTCCCGGTGCTGCCAAGCCCAAGAGAGCTGGTGGTGGTGCCCGA
GGCGGTCCCATGCGCGGTGGCCGTGGTGGTGGCCGTGGTGGCCCCATGCG
TGGTGGTCGCGGCGGCGCTCCCAGAGGACGCGGTGGCCCCCGCGGTGGTG
GCTTCCGTGGTGGTGGCGGTGGTGGTTTCGGCGGTGGTTTCTCGAGGGGT
GGTGGCAGAGGAGGACCTCGTGGTGGAGGCTTCCGAGGACGGTAGATGTC
TGACTCACTATATCTACGGAATCGGACGATCATGAAACGCAAATCGACAG
TCGCGGAGGTTTCCAGCAACCTCTCGGTCCCCCTGCCCAAGTTCTGGATG
GGAACTGTCATGCATTCTTGCGAAGGCGAGATGGTTTGCGAATCGATCAA
CCCCAAGATTCCTTACTTCAACGCCCCCATCTACCTCGAGAACAAGACCC
CTATCGGCAAGGTCGATGAAGTCCTGGGCCCTATCAACCAGGTCTACTTC
ACCATCAAGCCCCAGGAAGGAATTGTCGCGACCTCCTTCAAGCCTGGTGA
CAAGGTCTACATTGGTGGCGACAAGCTCCTTCCCTTGGAGAAGTTCCTTC
CCAAGCCCAAGCCCGCTCCCGGTGCTGCCAAGCCCAAGAGAGCTGGTGGT
GGTGCCCGAGGCGGTCCCATGCGCGGTGGCCGTGGTGGTGGCCGTGGTGG
CCCCATGCGTGGTGGTCGCGGCGGCGCTCCCAGAGGACGCGGTGGCCCCC
GCGGTGGTGGCTTCCGTGGTGGTGGCGGTGGTGGTTTCGGCGGTGGTTTC
TCGAGGGGTGGTGGCAGAGGAGGACCTCGTGGTGGAGGCTTCCGAGGACG
GTAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0042254ribosome biogenesis
GO:0001522pseudouridine synthesis
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CAN33_38300CAN33_38300Aspergillus niger FDAARGOS_311gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CAN33_38300-T1CAN33_38300-T1-proteinAspergillus niger FDAARGOS_311polypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_38300-T1.exon1CAN33_38300-T1.exon1Aspergillus niger FDAARGOS_311exon
CAN33_38300-T1.exon2CAN33_38300-T1.exon2Aspergillus niger FDAARGOS_311exon
CAN33_38300-T1.exon3CAN33_38300-T1.exon3Aspergillus niger FDAARGOS_311exon
CAN33_38300-T1.exon4CAN33_38300-T1.exon4Aspergillus niger FDAARGOS_311exon
CAN33_38300-T1.exon5CAN33_38300-T1.exon5Aspergillus niger FDAARGOS_311exon
CAN33_38300-T1.exon6CAN33_38300-T1.exon6Aspergillus niger FDAARGOS_311exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_38300-T1.cdsCAN33_38300-T1.cdsAspergillus niger FDAARGOS_311CDS


Properties
Property NameValue
DBxrefInterPro:IPR009000
DBxrefInterPro:IPR038664
DBxrefInterPro:IPR007504
DBxrefPFAM:PF04410
ProductGar1/Naf1 RNA binding region family protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger FDAARGOS_311 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NKJJ01000017.1supercontigNKJJ01000017.1:1359145..1360238 +
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