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CAN33_38885-T1, CAN33_38885-T1 (mRNA) Aspergillus niger FDAARGOS_311

Overview
NameCAN33_38885-T1
Unique NameCAN33_38885-T1
TypemRNA
OrganismAspergillus niger FDAARGOS_311
Sequences
The following sequences are available for this feature:

mRNA from alignment at NKJJ01000017.1:1730677..1732496+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>CAN33_38885-T1 ID=CAN33_38885-T1|Name=CAN33_38885-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=1820bp|location=Sequence derived from alignment at NKJJ01000017.1:1730677..1732496+ (Aspergillus niger FDAARGOS_311)
ATGTCTGATCGCGCCTCCTCGGCATCATTTCGAGCAGGACCTCCATCACC
ATCATCTCCCGCCGCAGGGACTCTCAAGCAAAACCAGTTACCAGCTCCCT
TATCCGATCGAATTCCACAGACTCCGACATCACCTCCGTTGATGTCGGTA
AGCGCTCAGAACTATGCCACCAACTTTGTATCCTCGCAAGCATCACCTAA
CCAGGCGACCTCTCAATCCGCAACCCTCTCATCACCCCCGTCCTCTGCTC
CGATGTCCACCCAAGCCTCGCAACAACCGACGGTAGGTACGGCGAATTCG
TTTCCGACGCCGGCCAGCAGCGTGAGCGGGCACTTCCCGGGTGCGACTTC
CTTCGATGATCCTGAAAATACAGATAAGCCAATGGGCTCGACAGTTCCAG
ACACAGGTGCGCAAACAGCGAACATGAATGCCGCGGCCATACAGCAGGCA
GAACACAGACGGACAGATCATGACCGGCATACAGAAGGTATAAAAATGGA
AGTTGGAGTCCGCGATTTTGCTGTGAACCACGGAGGCGACGCTATGGATA
TCGATAGTGAGGCGCCGGCTTCATCCAGTCGCAGTGAGCCAAGCTTGGAA
TCCTTGCAGAAGAACTTTTCGTCTGCCTTTCATGTTTGCAAAAGCTGTAA
GAGCTCCCCAGTCCTTGGCATGGCTGTTGCCACAATTTGCAATGCACTCT
CTCCCATCTTATATTTGGATTGAGCTTTGTTAACACACGTGGCTTTATGA
AAATGCAGCCCATATTGCGACTGGACCGGATCCATCGCTAGATCTCATCT
CACTGTACGGATTAGGTCCAGTGGCAAAGTCTGTTGCTCGGATGGATCCT
GTGACAGGCGAGAAGATCAACAGGCTCAGGAAATCCTATGAAGGAAAGCT
GAAGGGCTTGGGACTCGCAGGCAGGAACAAGCCAGTGAAGACCGAGCCTG
GTGCGCCCGGAAGCCTCAGGCACATGACCATGTGGCCAGAGGAAGAATGG
CAAAACCAAAAAGTGTTCGGGAAGGAGATCAAGGTAGCGGACATGGACTC
TGCGCTGCACAGCTTGCAGATGAGGGCCATGAAGATGGAGCCGGGCACGG
TACCGAACAATGAGTATTGGGAAGACGTGCTGGGGCACGAGAAGCCATCT
AAGCACGCCGGTGGCGACGCCAGCAAAAAGGGCGTCGCACCCCCTCCCAA
CGGAGTCCGGATTCCCCAACCGAATGGAACCCCAGCGCCTGTTTCAGACC
AAGAGCGATCCCGACCCAGCAGGGGACGTAAACGGCATTACGACGACAAC
AGTTTTGTTGGTTACGGCGAAGGTTACGCAGACGATGATGACGATGGGGC
ATTTTATTCAAACAGTGAAGGCATGGGGAAGAAAAAACGGAAGAAGGTAG
GGCGTTCGGACGGTGAAATGGCATTCTAACATACTGATCACATTCGCTTA
TTTTTCGAAAAGGACCACGTTTCGAAGATATCTACCCCTCTACCTGACCG
AGGTGGAAGTTACGGGGTTGGTATGTTTGGGATCGGGGCCAGGTAAACGA
ACGGGACGGAAACTTGATGGGATGAAAAGCTTTGTGGCTTGTTCGTTTCT
TTTCTCTGCCTTCTTGGCTTTGCTTCATGCATAGGGTCCTTGTTCTGAAG
GCGAGGGCTAGACTCTGTTGGATCTGTATCTGGCATTGCCAAATGCTGGA
CAGATTCGGTTGACCTATAGTCATGTCCTCGCCATATCTGTTAATTCTCC
GTACAAATTTTGCATCACGGTGCTGGATATACCCGGCTTTCACAATGGGA
CGGCGTTGGAGGAGCTATGA
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Coding sequence (CDS) from alignment at NKJJ01000017.1:1730677..1732496+

>CAN33_38885-T1 ID=CAN33_38885-T1|Name=CAN33_38885-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=3609bp|location=Sequence derived from alignment at NKJJ01000017.1:1730677..1732496+ (Aspergillus niger FDAARGOS_311)
ATGTCTGATCGCGCCTCCTCGGCATCATTTCGAGCAGGACCTCCATCACC
ATCATCTCCCGCCGCAGGGACTCTCAAGCAAAACCAGTTACCAGCTCCCT
TATCCGATCGAATTCCACAGACTCCGACATCACCTCCGTTGATGTCGGTA
AGCGCTCAGAACTATGCCACCAACTTTGTATCCTCGCAAGCATCACCTAA
CCAGGCGACCTCTCAATCCGCAACCCTCTCATCACCCCCGTCCTCTGCTC
CGATGTCCACCCAAGCCTCGCAACAACCGACGGTAGGTACGGCGAATTCG
TTTCCGACGCCGGCCAGCAGCGTGAGCGGGCACTTCCCGGGTGCGACTTC
CTTCGATGATCCTGAAAATACAGATAAGCCAATGGGCTCGACAGTTCCAG
ACACAGCCCATATTGCGACTGGACCGGATCCATCGCTAGATCTCATCTCA
CTGTACGGATTAGGTCCAGTGGCAAAGTCTGTTGCTCGGATGGATCCTGT
GACAGGCGAGAAGATCAACAGGCTCAGGAAATCCTATGAAGGAAAGCTGA
AGGGCTTGGGACTCGCAGGCAGGAACAAGCCAGTGAAGACCGAGCCTGGT
GCGCCCGGAAGCCTCAGGCACATGACCATGTGGCCAGAGGAAGAATGGCA
AAACCAAAAAGTGTTCGGGAAGGAGATCAAGGTAGCGGACATGGACTCTG
CGCTGCACAGCTTGCAGATGAGGGCCATGAAGATGGAGCCGGGCACGGTA
CCGAACAATGAGTATTGGGAAGACGTGCTGGGGCACGAGAAGCCATCTAA
GCACGCCGGTGGCGACGCCAGCAAAAAGGGCGTCGCACCCCCTCCCAACG
GAGTCCGGATTCCCCAACCGAATGGAACCCCAGCGCCTGTTTCAGACCAA
GAGCGATCCCGACCCAGCAGGGGACGTAAACGGCATTACGACGACAACAG
TTTTGTTGGTTACGGCGAAGGTTACGCAGACGATGATGACGATGGGGCAT
TTTATTCAAACAGTGAAGGCATGGGGAAGAAAAAACGGAAGAAGACTCTG
TTGGATCTGTATCTGGCATTGCCAAATGCTGGACAGATTCGGTTGACCTA
TAGTCATGTCCTCGCCATATCTGTTAATTCTCCGTACAAATTTTGCATCA
CGGTGCTGGATATACCCGGCTTTCACAATGGGACGGCGTTGGAGGAGCTA
TGAATGTCTGATCGCGCCTCCTCGGCATCATTTCGAGCAGGACCTCCATC
ACCATCATCTCCCGCCGCAGGGACTCTCAAGCAAAACCAGTTACCAGCTC
CCTTATCCGATCGAATTCCACAGACTCCGACATCACCTCCGTTGATGTCG
GTAAGCGCTCAGAACTATGCCACCAACTTTGTATCCTCGCAAGCATCACC
TAACCAGGCGACCTCTCAATCCGCAACCCTCTCATCACCCCCGTCCTCTG
CTCCGATGTCCACCCAAGCCTCGCAACAACCGACGGTAGGTACGGCGAAT
TCGTTTCCGACGCCGGCCAGCAGCGTGAGCGGGCACTTCCCGGGTGCGAC
TTCCTTCGATGATCCTGAAAATACAGATAAGCCAATGGGCTCGACAGTTC
CAGACACAGCCCATATTGCGACTGGACCGGATCCATCGCTAGATCTCATC
TCACTGTACGGATTAGGTCCAGTGGCAAAGTCTGTTGCTCGGATGGATCC
TGTGACAGGCGAGAAGATCAACAGGCTCAGGAAATCCTATGAAGGAAAGC
TGAAGGGCTTGGGACTCGCAGGCAGGAACAAGCCAGTGAAGACCGAGCCT
GGTGCGCCCGGAAGCCTCAGGCACATGACCATGTGGCCAGAGGAAGAATG
GCAAAACCAAAAAGTGTTCGGGAAGGAGATCAAGGTAGCGGACATGGACT
CTGCGCTGCACAGCTTGCAGATGAGGGCCATGAAGATGGAGCCGGGCACG
GTACCGAACAATGAGTATTGGGAAGACGTGCTGGGGCACGAGAAGCCATC
TAAGCACGCCGGTGGCGACGCCAGCAAAAAGGGCGTCGCACCCCCTCCCA
ACGGAGTCCGGATTCCCCAACCGAATGGAACCCCAGCGCCTGTTTCAGAC
CAAGAGCGATCCCGACCCAGCAGGGGACGTAAACGGCATTACGACGACAA
CAGTTTTGTTGGTTACGGCGAAGGTTACGCAGACGATGATGACGATGGGG
CATTTTATTCAAACAGTGAAGGCATGGGGAAGAAAAAACGGAAGAAGACT
CTGTTGGATCTGTATCTGGCATTGCCAAATGCTGGACAGATTCGGTTGAC
CTATAGTCATGTCCTCGCCATATCTGTTAATTCTCCGTACAAATTTTGCA
TCACGGTGCTGGATATACCCGGCTTTCACAATGGGACGGCGTTGGAGGAG
CTATGAATGTCTGATCGCGCCTCCTCGGCATCATTTCGAGCAGGACCTCC
ATCACCATCATCTCCCGCCGCAGGGACTCTCAAGCAAAACCAGTTACCAG
CTCCCTTATCCGATCGAATTCCACAGACTCCGACATCACCTCCGTTGATG
TCGGTAAGCGCTCAGAACTATGCCACCAACTTTGTATCCTCGCAAGCATC
ACCTAACCAGGCGACCTCTCAATCCGCAACCCTCTCATCACCCCCGTCCT
CTGCTCCGATGTCCACCCAAGCCTCGCAACAACCGACGGTAGGTACGGCG
AATTCGTTTCCGACGCCGGCCAGCAGCGTGAGCGGGCACTTCCCGGGTGC
GACTTCCTTCGATGATCCTGAAAATACAGATAAGCCAATGGGCTCGACAG
TTCCAGACACAGCCCATATTGCGACTGGACCGGATCCATCGCTAGATCTC
ATCTCACTGTACGGATTAGGTCCAGTGGCAAAGTCTGTTGCTCGGATGGA
TCCTGTGACAGGCGAGAAGATCAACAGGCTCAGGAAATCCTATGAAGGAA
AGCTGAAGGGCTTGGGACTCGCAGGCAGGAACAAGCCAGTGAAGACCGAG
CCTGGTGCGCCCGGAAGCCTCAGGCACATGACCATGTGGCCAGAGGAAGA
ATGGCAAAACCAAAAAGTGTTCGGGAAGGAGATCAAGGTAGCGGACATGG
ACTCTGCGCTGCACAGCTTGCAGATGAGGGCCATGAAGATGGAGCCGGGC
ACGGTACCGAACAATGAGTATTGGGAAGACGTGCTGGGGCACGAGAAGCC
ATCTAAGCACGCCGGTGGCGACGCCAGCAAAAAGGGCGTCGCACCCCCTC
CCAACGGAGTCCGGATTCCCCAACCGAATGGAACCCCAGCGCCTGTTTCA
GACCAAGAGCGATCCCGACCCAGCAGGGGACGTAAACGGCATTACGACGA
CAACAGTTTTGTTGGTTACGGCGAAGGTTACGCAGACGATGATGACGATG
GGGCATTTTATTCAAACAGTGAAGGCATGGGGAAGAAAAAACGGAAGAAG
ACTCTGTTGGATCTGTATCTGGCATTGCCAAATGCTGGACAGATTCGGTT
GACCTATAGTCATGTCCTCGCCATATCTGTTAATTCTCCGTACAAATTTT
GCATCACGGTGCTGGATATACCCGGCTTTCACAATGGGACGGCGTTGGAG
GAGCTATGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0016592mediator complex
Vocabulary: Molecular Function
TermDefinition
GO:0003712transcription coregulator activity
Vocabulary: Biological Process
TermDefinition
GO:0006357regulation of transcription by RNA polymerase II
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CAN33_38885CAN33_38885Aspergillus niger FDAARGOS_311gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_38885-T1.exon1CAN33_38885-T1.exon1Aspergillus niger FDAARGOS_311exon
CAN33_38885-T1.exon2CAN33_38885-T1.exon2Aspergillus niger FDAARGOS_311exon
CAN33_38885-T1.exon3CAN33_38885-T1.exon3Aspergillus niger FDAARGOS_311exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_38885-T1.cdsCAN33_38885-T1.cdsAspergillus niger FDAARGOS_311CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CAN33_38885-T1CAN33_38885-T1-proteinAspergillus niger FDAARGOS_311polypeptide


Properties
Property NameValue
NoteEggNog:ENOG41
DBxrefInterPro:IPR013942
DBxrefPFAM:PF08633
ProductRox3 mediator complex subunit family protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger FDAARGOS_311 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NKJJ01000017.1supercontigNKJJ01000017.1:1730677..1732496 +
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