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CAN33_43615-T1, CAN33_43615-T1 (mRNA) Aspergillus niger FDAARGOS_311

Overview
NameCAN33_43615-T1
Unique NameCAN33_43615-T1
TypemRNA
OrganismAspergillus niger FDAARGOS_311
Sequences
The following sequences are available for this feature:

mRNA from alignment at NKJJ01000022.1:839101..840427-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>CAN33_43615-T1 ID=CAN33_43615-T1|Name=CAN33_43615-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=1327bp|location=Sequence derived from alignment at NKJJ01000022.1:839101..840427- (Aspergillus niger FDAARGOS_311)
ATGGCTCCCATCCCGCTCAGCACGGTCGACAGTGTGTATTGATTCTTTCT
AATCCAATGTTATCAGTTACTAACTCTATCTTCTGCCCAGCCGACCTCAA
AGACGTAATCCAACACCTCTTTGAAATCCAATCCGCCGTTCACGGCTACC
TCGGTCCCGAAACCCAACAAGAGCTCGTTCGCAAAATGTACTCTCCTTCC
TATCCCTGCCATCTTCCTCACCTAAGATTCCACTCTACTAACGGATTACG
TGTTATGCATTCAGAAAGAACCTCACCCTCGCGCTCTCCACCCTCAGCAC
ACACACCTCCGATAATCACCCCGACGCACAATCACAATCACCAGGAAACA
GCAACGACCCTCCCATCCACAGCATCCAACTCCCCCCCGAGATTATCGAC
TACGTAGATGCAGCAAGGAATCCGGATATCTACACAAGAGAATTCGTGGA
GTTGATCCAGCGCGGGAACCAGGATCTGAGGGGGAAGAAGGAGGCGTTTG
GGAGTTTCCGGGATGTGTTAGCGAGGGAGATGAGGGGAGCGATGCCGGAG
GTTAGGGGGGAGGTGGATAGAGTGGTTGCTTCGTTCGGTGGTGATGGAAA
TGGGAATAATAATGGGGAGGGGAGGGGATGATGTTTAGTTTCATGATGAT
GGTTATGATCGAATAGAGGGATAGAACTATATTGGGATGGAGTTTGGGGG
TGGAGTTATTTCTTGCTTGCTTTATTTTTGGGGTTAATAATTATGATGAG
TGATTTGTGATGATGGATGATGGAAGGAATGTGATGATCGGAATCCAATG
CCGACTAGACTGAAACTCAGGTCAGCAAGCAAGTTCAGCCTTGTGTGTGG
CAGTGGCTGCTGCTGCTGCCCCCTGGAGTTATTATTAACTCTTCAGACCA
GGAGCAGGGGGATAAAAATAAATCTGAATGAATGATCGAAATAAAAATAA
TGGGATGCACGTGGGGATGCAAGGACTGTTTTTCTCCTTTATTCTTCTCC
TTTATGATCTCATATGGAAGGGGAGGAGAGCAGGTATAGCAGGCATAACA
TAACCCTATGTGGGAGATCATCCACCAGAGTTAGGATCCACCTCAGGACG
GAGTATCTCAGAGTTTAACATAACACAACATTAACTAACAGATAAACGCT
CAGCTGAACAATAATAATGACAACAGAGTGAACAGTCTCCCCGCCCAATA
AACCAGGCGAAGGGTAACTGCAAATAACAATGCACCGCGTCACGCCGGCC
CCCGCCCGTCAGCCGGGCACTGACTGCCTTTCAGTGTCCCCAGACGGCAA
GGATCTGAGCCCGACGACCTGTCATGA
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Coding sequence (CDS) from alignment at NKJJ01000022.1:839101..840427-

>CAN33_43615-T1 ID=CAN33_43615-T1|Name=CAN33_43615-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=1692bp|location=Sequence derived from alignment at NKJJ01000022.1:839101..840427- (Aspergillus niger FDAARGOS_311)
TGTCCCCAGACGGCAAGGATCTGAGCCCGACGACCTGTCATGAAAAGAAC
CTCACCCTCGCGCTCTCCACCCTCAGCACACACACCTCCGATAATCACCC
CGACGCACAATCACAATCACCAGGAAACAGCAACGACCCTCCCATCCACA
GCATCCAACTCCCCCCCGAGATTATCGACTACGTAGATGCAGCAAGGAAT
CCGGATATCTACACAAGAGAATTCGTGGAGTTGATCCAGCGCGGGAACCA
GGATCTGAGGGGGAAGAAGGAGGCGTTTGGGAGTTTCCGGGATGTCCGAC
CTCAAAGACGTAATCCAACACCTCTTTGAAATCCAATCCGCCGTTCACGG
CTACCTCGGTCCCGAAACCCAACAAGAGCTCGTTCGCAAAATATGGCTCC
CATCCCGCTCAGCACGGTCGACATGTCCCCAGACGGCAAGGATCTGAGCC
CGACGACCTGTCATGAAAAGAACCTCACCCTCGCGCTCTCCACCCTCAGC
ACACACACCTCCGATAATCACCCCGACGCACAATCACAATCACCAGGAAA
CAGCAACGACCCTCCCATCCACAGCATCCAACTCCCCCCCGAGATTATCG
ACTACGTAGATGCAGCAAGGAATCCGGATATCTACACAAGAGAATTCGTG
GAGTTGATCCAGCGCGGGAACCAGGATCTGAGGGGGAAGAAGGAGGCGTT
TGGGAGTTTCCGGGATGTCCGACCTCAAAGACGTAATCCAACACCTCTTT
GAAATCCAATCCGCCGTTCACGGCTACCTCGGTCCCGAAACCCAACAAGA
GCTCGTTCGCAAAATATGGCTCCCATCCCGCTCAGCACGGTCGACATGTC
CCCAGACGGCAAGGATCTGAGCCCGACGACCTGTCATGAAAAGAACCTCA
CCCTCGCGCTCTCCACCCTCAGCACACACACCTCCGATAATCACCCCGAC
GCACAATCACAATCACCAGGAAACAGCAACGACCCTCCCATCCACAGCAT
CCAACTCCCCCCCGAGATTATCGACTACGTAGATGCAGCAAGGAATCCGG
ATATCTACACAAGAGAATTCGTGGAGTTGATCCAGCGCGGGAACCAGGAT
CTGAGGGGGAAGAAGGAGGCGTTTGGGAGTTTCCGGGATGTCCGACCTCA
AAGACGTAATCCAACACCTCTTTGAAATCCAATCCGCCGTTCACGGCTAC
CTCGGTCCCGAAACCCAACAAGAGCTCGTTCGCAAAATATGGCTCCCATC
CCGCTCAGCACGGTCGACATGTCCCCAGACGGCAAGGATCTGAGCCCGAC
GACCTGTCATGAAAAGAACCTCACCCTCGCGCTCTCCACCCTCAGCACAC
ACACCTCCGATAATCACCCCGACGCACAATCACAATCACCAGGAAACAGC
AACGACCCTCCCATCCACAGCATCCAACTCCCCCCCGAGATTATCGACTA
CGTAGATGCAGCAAGGAATCCGGATATCTACACAAGAGAATTCGTGGAGT
TGATCCAGCGCGGGAACCAGGATCTGAGGGGGAAGAAGGAGGCGTTTGGG
AGTTTCCGGGATGTCCGACCTCAAAGACGTAATCCAACACCTCTTTGAAA
TCCAATCCGCCGTTCACGGCTACCTCGGTCCCGAAACCCAACAAGAGCTC
GTTCGCAAAATATGGCTCCCATCCCGCTCAGCACGGTCGACA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0016592mediator complex
Vocabulary: Biological Process
TermDefinition
GO:0006357regulation of transcription by RNA polymerase II
Vocabulary: Molecular Function
TermDefinition
GO:0003712transcription coregulator activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NUT2CAN33_43615Aspergillus niger FDAARGOS_311gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CAN33_43615-T1CAN33_43615-T1-proteinAspergillus niger FDAARGOS_311polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_43615-T1.cdsCAN33_43615-T1.cdsAspergillus niger FDAARGOS_311CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_43615-T1.exon4CAN33_43615-T1.exon4Aspergillus niger FDAARGOS_311exon
CAN33_43615-T1.exon3CAN33_43615-T1.exon3Aspergillus niger FDAARGOS_311exon
CAN33_43615-T1.exon2CAN33_43615-T1.exon2Aspergillus niger FDAARGOS_311exon
CAN33_43615-T1.exon1CAN33_43615-T1.exon1Aspergillus niger FDAARGOS_311exon


Properties
Property NameValue
NoteBUSCO:EOG09264V30
DBxrefInterPro:IPR019145
DBxrefPFAM:PF09748
ProductRNA polymerase II mediator complex subunit
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger FDAARGOS_311 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NKJJ01000022.1supercontigNKJJ01000022.1:839101..840427 -
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