You are here

Home

CAN33_46020-T1, CAN33_46020-T1 (mRNA) Aspergillus niger FDAARGOS_311

Overview
NameCAN33_46020-T1
Unique NameCAN33_46020-T1
TypemRNA
OrganismAspergillus niger FDAARGOS_311
Sequences
The following sequences are available for this feature:

mRNA from alignment at NKJJ01000022.1:2396920..2398423-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>CAN33_46020-T1 ID=CAN33_46020-T1|Name=CAN33_46020-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=1504bp|location=Sequence derived from alignment at NKJJ01000022.1:2396920..2398423- (Aspergillus niger FDAARGOS_311)
ATGTCTGCTGTACGTCCCGTGAGAAAAGGTCTTCACCTTTTGGGCTCGAG
CTCGCTCGCCCGCCCCGCCTCTGTCGCTGTCAATGGCGCATCTCTGCTCC
CGCGGCAGCTGGCAGCTTCTCCGCGCGCTCTCCGCCCCGCGGCCAGCTCC
ATTCCTGCTGCTCGTCCACTTCCCCGGGTGACTTCGCTGTCTGCTCAAGG
AGGTGTCCGATATGCCTCGTCTGTAGCTCCTTCAGGTCCAGTGAAGAAGA
CTCAGCTGTATGACCTTCACTTGGCCCGGGGTGCCAAAATGGTCCCCTTT
GCGGGGTTCTCCATGCCCCTGCAGTATTCCGACCTCAGTCATGTTGAGAG
CCACAAGTGGACTCGGGAAAAGGCCAGTCTTTTCGACGTGAGCCATATGT
GCGTATACCTCTCTTCGTGAAGTGCCCAGAGTCTCGTTAATTGACCATCT
ACAGGGTTCAACATCAGCTCAGCGGTCCCGGCGCTCTCGACCTCCTCATG
AAGGTCACCCCCTCATCCCTCGACAAGCTCAAGCATAACCAATCCACTCT
CTCTTGTCTCCTGGAGGATGGAACTGGCGGCATTATCGATGACACCGTCA
TCACTCGTCGTACCGATGACACCTTCTACTTCGTGACCAACGCCGGTCGT
CGCACCGAGGACCTGGCCTTCCTGCAAGCCGAAATCGACACCTACAAGCA
AGCCCACGGGCCCGACAGCCTGAAGTGGGAGATCCTCGAGGACCGCGCCC
TAGTCGCTCTCCAAGGTCCTAAGGCTGCCTCCGTCCTCCAATCCCTCGTC
ACCCCCGACGGTGCCAACTCAGATCTCTCCACCCTCTACTTCGGTAACTG
CCGAGAGCTGCACCTCACCTTCCCCGACGGCACCACCACCCCGCAGCCCC
TTCTCGTCTCCCGAACCGGCTACACCGGCGAAGATGGCTTTGAGATCTCC
ATCCCCACTGCCAGCGACGCCACCCTACCTGTCCGCGTTACCGAGCTCTT
CCTCTCCAACCCCGACGAAGTCCGTCTCGCCGGTCTCGCCGCGCGCGACT
CCCTCCGTCTCGAAGCCGGAATGTGTCTCTATGGAAGCGACATTTCCACC
TCTCAAACTCCTCCCGGCGCCTCCCTGACCTGGCTCGTAGGCAAGGAGCG
TCGTGACCCTGCCACCGCCAACTTCAACGGCGCCTCCACCATCCTCCCCC
AGGTTGCCTCCCCAAGACCCTCTCCCAGCGCCGTGTCGGATTCACCGTTG
AGAAGGGCTCCCCTGCCCGTGAGGGCGCCATCATTGTCGATCTGAACGAT
GAGTCCCGCACCCAGATCGGTGTCATTACCTCTGGCCTTCCTAGCCCTAC
CCTGGGCGGCACTAACATTGCCATGGGCTACATCAAGAACGGCCTGCATA
AGAAGGGCACCGAGGTTGGCGTCTTGGTGAGGAACAAGCTCCGCAAGGCT
ACGGTTACGGGTATGCCTTGGGTTGAGAGCAAGTTCTATCGTCCCAAGGC
TTAG
back to top

Coding sequence (CDS) from alignment at NKJJ01000022.1:2396920..2398423-

>CAN33_46020-T1 ID=CAN33_46020-T1|Name=CAN33_46020-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=4185bp|location=Sequence derived from alignment at NKJJ01000022.1:2396920..2398423- (Aspergillus niger FDAARGOS_311)
GGCTCCCCTGCCCGTGAGGGCGCCATCATTGTCGATCTGAACGATGAGTC
CCGCACCCAGATCGGTGTCATTACCTCTGGCCTTCCTAGCCCTACCCTGG
GCGGCACTAACATTGCCATGGGCTACATCAAGAACGGCCTGCATAAGAAG
GGCACCGAGGTTGGCGTCTTGGTGAGGAACAAGCTCCGCAAGGCTACGGT
TACGGGTATGCCTTGGGTTGAGAGCAAGTTCTATCGTCCCAAGGCTTAGG
GTTCAACATCAGCTCAGCGGTCCCGGCGCTCTCGACCTCCTCATGAAGGT
CACCCCCTCATCCCTCGACAAGCTCAAGCATAACCAATCCACTCTCTCTT
GTCTCCTGGAGGATGGAACTGGCGGCATTATCGATGACACCGTCATCACT
CGTCGTACCGATGACACCTTCTACTTCGTGACCAACGCCGGTCGTCGCAC
CGAGGACCTGGCCTTCCTGCAAGCCGAAATCGACACCTACAAGCAAGCCC
ACGGGCCCGACAGCCTGAAGTGGGAGATCCTCGAGGACCGCGCCCTAGTC
GCTCTCCAAGGTCCTAAGGCTGCCTCCGTCCTCCAATCCCTCGTCACCCC
CGACGGTGCCAACTCAGATCTCTCCACCCTCTACTTCGGTAACTGCCGAG
AGCTGCACCTCACCTTCCCCGACGGCACCACCACCCCGCAGCCCCTTCTC
GTCTCCCGAACCGGCTACACCGGCGAAGATGGCTTTGAGATCTCCATCCC
CACTGCCAGCGACGCCACCCTACCTGTCCGCGTTACCGAGCTCTTCCTCT
CCAACCCCGACGAAGTCCGTCTCGCCGGTCTCGCCGCGCGCGACTCCCTC
CGTCTCGAAGCCGGAATGTGTCTCTATGGAAGCGACATTTCCACCTCTCA
AACTCCTCCCGGCGCCTCCCTGACCTGGCTCGTAGGCAAGGAGCGTCGTG
ACCCTGCCACCGCCAACTTCAACGGCGCCTCCACCATCCTCCCCCAGATG
TCTGCTGTACGTCCCGTGAGAAAAGGTCTTCACCTTTTGGGCTCGAGCTC
GCTCGCCCGCCCCGCCTCTGTCGCTGTCAATGGCGCATCTCTGCTCCCGC
GGCAGCTGGCAGCTTCTCCGCGCGCTCTCCGCCCCGCGGCCAGCTCCATT
CCTGCTGCTCGTCCACTTCCCCGGGTGACTTCGCTGTCTGCTCAAGGAGG
TGTCCGATATGCCTCGTCTGTAGCTCCTTCAGGTCCAGTGAAGAAGACTC
AGCTGTATGACCTTCACTTGGCCCGGGGTGCCAAAATGGTCCCCTTTGCG
GGGTTCTCCATGCCCCTGCAGTATTCCGACCTCAGTCATGTTGAGAGCCA
CAAGTGGACTCGGGAAAAGGCCAGTCTTTTCGACGTGAGCCATATGGCTC
CCCTGCCCGTGAGGGCGCCATCATTGTCGATCTGAACGATGAGTCCCGCA
CCCAGATCGGTGTCATTACCTCTGGCCTTCCTAGCCCTACCCTGGGCGGC
ACTAACATTGCCATGGGCTACATCAAGAACGGCCTGCATAAGAAGGGCAC
CGAGGTTGGCGTCTTGGTGAGGAACAAGCTCCGCAAGGCTACGGTTACGG
GTATGCCTTGGGTTGAGAGCAAGTTCTATCGTCCCAAGGCTTAGGGTTCA
ACATCAGCTCAGCGGTCCCGGCGCTCTCGACCTCCTCATGAAGGTCACCC
CCTCATCCCTCGACAAGCTCAAGCATAACCAATCCACTCTCTCTTGTCTC
CTGGAGGATGGAACTGGCGGCATTATCGATGACACCGTCATCACTCGTCG
TACCGATGACACCTTCTACTTCGTGACCAACGCCGGTCGTCGCACCGAGG
ACCTGGCCTTCCTGCAAGCCGAAATCGACACCTACAAGCAAGCCCACGGG
CCCGACAGCCTGAAGTGGGAGATCCTCGAGGACCGCGCCCTAGTCGCTCT
CCAAGGTCCTAAGGCTGCCTCCGTCCTCCAATCCCTCGTCACCCCCGACG
GTGCCAACTCAGATCTCTCCACCCTCTACTTCGGTAACTGCCGAGAGCTG
CACCTCACCTTCCCCGACGGCACCACCACCCCGCAGCCCCTTCTCGTCTC
CCGAACCGGCTACACCGGCGAAGATGGCTTTGAGATCTCCATCCCCACTG
CCAGCGACGCCACCCTACCTGTCCGCGTTACCGAGCTCTTCCTCTCCAAC
CCCGACGAAGTCCGTCTCGCCGGTCTCGCCGCGCGCGACTCCCTCCGTCT
CGAAGCCGGAATGTGTCTCTATGGAAGCGACATTTCCACCTCTCAAACTC
CTCCCGGCGCCTCCCTGACCTGGCTCGTAGGCAAGGAGCGTCGTGACCCT
GCCACCGCCAACTTCAACGGCGCCTCCACCATCCTCCCCCAGATGTCTGC
TGTACGTCCCGTGAGAAAAGGTCTTCACCTTTTGGGCTCGAGCTCGCTCG
CCCGCCCCGCCTCTGTCGCTGTCAATGGCGCATCTCTGCTCCCGCGGCAG
CTGGCAGCTTCTCCGCGCGCTCTCCGCCCCGCGGCCAGCTCCATTCCTGC
TGCTCGTCCACTTCCCCGGGTGACTTCGCTGTCTGCTCAAGGAGGTGTCC
GATATGCCTCGTCTGTAGCTCCTTCAGGTCCAGTGAAGAAGACTCAGCTG
TATGACCTTCACTTGGCCCGGGGTGCCAAAATGGTCCCCTTTGCGGGGTT
CTCCATGCCCCTGCAGTATTCCGACCTCAGTCATGTTGAGAGCCACAAGT
GGACTCGGGAAAAGGCCAGTCTTTTCGACGTGAGCCATATGGCTCCCCTG
CCCGTGAGGGCGCCATCATTGTCGATCTGAACGATGAGTCCCGCACCCAG
ATCGGTGTCATTACCTCTGGCCTTCCTAGCCCTACCCTGGGCGGCACTAA
CATTGCCATGGGCTACATCAAGAACGGCCTGCATAAGAAGGGCACCGAGG
TTGGCGTCTTGGTGAGGAACAAGCTCCGCAAGGCTACGGTTACGGGTATG
CCTTGGGTTGAGAGCAAGTTCTATCGTCCCAAGGCTTAGGGTTCAACATC
AGCTCAGCGGTCCCGGCGCTCTCGACCTCCTCATGAAGGTCACCCCCTCA
TCCCTCGACAAGCTCAAGCATAACCAATCCACTCTCTCTTGTCTCCTGGA
GGATGGAACTGGCGGCATTATCGATGACACCGTCATCACTCGTCGTACCG
ATGACACCTTCTACTTCGTGACCAACGCCGGTCGTCGCACCGAGGACCTG
GCCTTCCTGCAAGCCGAAATCGACACCTACAAGCAAGCCCACGGGCCCGA
CAGCCTGAAGTGGGAGATCCTCGAGGACCGCGCCCTAGTCGCTCTCCAAG
GTCCTAAGGCTGCCTCCGTCCTCCAATCCCTCGTCACCCCCGACGGTGCC
AACTCAGATCTCTCCACCCTCTACTTCGGTAACTGCCGAGAGCTGCACCT
CACCTTCCCCGACGGCACCACCACCCCGCAGCCCCTTCTCGTCTCCCGAA
CCGGCTACACCGGCGAAGATGGCTTTGAGATCTCCATCCCCACTGCCAGC
GACGCCACCCTACCTGTCCGCGTTACCGAGCTCTTCCTCTCCAACCCCGA
CGAAGTCCGTCTCGCCGGTCTCGCCGCGCGCGACTCCCTCCGTCTCGAAG
CCGGAATGTGTCTCTATGGAAGCGACATTTCCACCTCTCAAACTCCTCCC
GGCGCCTCCCTGACCTGGCTCGTAGGCAAGGAGCGTCGTGACCCTGCCAC
CGCCAACTTCAACGGCGCCTCCACCATCCTCCCCCAGATGTCTGCTGTAC
GTCCCGTGAGAAAAGGTCTTCACCTTTTGGGCTCGAGCTCGCTCGCCCGC
CCCGCCTCTGTCGCTGTCAATGGCGCATCTCTGCTCCCGCGGCAGCTGGC
AGCTTCTCCGCGCGCTCTCCGCCCCGCGGCCAGCTCCATTCCTGCTGCTC
GTCCACTTCCCCGGGTGACTTCGCTGTCTGCTCAAGGAGGTGTCCGATAT
GCCTCGTCTGTAGCTCCTTCAGGTCCAGTGAAGAAGACTCAGCTGTATGA
CCTTCACTTGGCCCGGGGTGCCAAAATGGTCCCCTTTGCGGGGTTCTCCA
TGCCCCTGCAGTATTCCGACCTCAGTCATGTTGAGAGCCACAAGTGGACT
CGGGAAAAGGCCAGTCTTTTCGACGTGAGCCATAT
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0006546glycine catabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0004047aminomethyltransferase activity
GO:0005515protein binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CAN33_46020CAN33_46020Aspergillus niger FDAARGOS_311gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CAN33_46020-T1CAN33_46020-T1-proteinAspergillus niger FDAARGOS_311polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_46020-T1.cdsCAN33_46020-T1.cdsAspergillus niger FDAARGOS_311CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_46020-T1.exon3CAN33_46020-T1.exon3Aspergillus niger FDAARGOS_311exon
CAN33_46020-T1.exon2CAN33_46020-T1.exon2Aspergillus niger FDAARGOS_311exon
CAN33_46020-T1.exon1CAN33_46020-T1.exon1Aspergillus niger FDAARGOS_311exon


Properties
Property NameValue
NoteBUSCO:EOG09263J6Z
DBxrefInterPro:IPR029043
DBxrefInterPro:IPR006223
DBxrefInterPro:IPR028896
DBxrefInterPro:IPR027266
DBxrefInterPro:IPR013977
DBxrefInterPro:IPR006222
DBxrefPFAM:PF08669
DBxrefPFAM:PF01571
Productglycine cleavage system T protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger FDAARGOS_311 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NKJJ01000022.1supercontigNKJJ01000022.1:2396920..2398423 -
Powered by Drupal