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CAN33_46390-T1, CAN33_46390-T1 (mRNA) Aspergillus niger FDAARGOS_311

Overview
NameCAN33_46390-T1
Unique NameCAN33_46390-T1
TypemRNA
OrganismAspergillus niger FDAARGOS_311
Sequences
The following sequences are available for this feature:

mRNA from alignment at NKJJ01000022.1:2633664..2634046+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>CAN33_46390-T1 ID=CAN33_46390-T1|Name=CAN33_46390-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=383bp|location=Sequence derived from alignment at NKJJ01000022.1:2633664..2634046+ (Aspergillus niger FDAARGOS_311)
ATGTCGCTTCACTCTTATATTAACAGTAAGTTTGGTCTCAAGAGATCCAT
TTCATGTCTGGGATTTAGTCTCATGGTCAGTGCTAACGTATGTGGTTTTA
CCCCGATATAGAGAAAGTATGCATCCTGACGGTTGACGGACGGACACTCC
TGGGGACATTACTCTCGACCGACCAGCTCACGAACCTGGTTCTCCTGGAC
ACGATCGAGCGAATCATCCGGACCCCCGACGACCCGGAACCCAGTTCCCA
GATTGAACATGGGCTGTATCTGATCCGAGGCGACAACGTTGTATTATGCG
GAGAGGTGGACGAAGCCATTGACAACGACATCGACTGGACGAAGGTCAGG
GGAGAAGTGGTCAAAGGTACCAAGAACGCATGA
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Coding sequence (CDS) from alignment at NKJJ01000022.1:2633664..2634046+

>CAN33_46390-T1 ID=CAN33_46390-T1|Name=CAN33_46390-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=594bp|location=Sequence derived from alignment at NKJJ01000022.1:2633664..2634046+ (Aspergillus niger FDAARGOS_311)
ATGTCGCTTCACTCTTATATTAACAAGAAAGTATGCATCCTGACGGTTGA
CGGACGGACACTCCTGGGGACATTACTCTCGACCGACCAGCTCACGAACC
TGGTTCTCCTGGACACGATCGAGCGAATCATCCGGACCCCCGACGACCCG
GAACCCAGTTCCCAGATTGAACATGGGCTGTATCTGATCCGAGGCGACAA
CGTTGTATTATGCGGAGAGGTGGACGAAGCCATTGACAACGACATCGACT
GGACGAAGGTCAGGGGAGAAGTGGTCAAAGGTACCAAGAACGCATGAATG
TCGCTTCACTCTTATATTAACAAGAAAGTATGCATCCTGACGGTTGACGG
ACGGACACTCCTGGGGACATTACTCTCGACCGACCAGCTCACGAACCTGG
TTCTCCTGGACACGATCGAGCGAATCATCCGGACCCCCGACGACCCGGAA
CCCAGTTCCCAGATTGAACATGGGCTGTATCTGATCCGAGGCGACAACGT
TGTATTATGCGGAGAGGTGGACGAAGCCATTGACAACGACATCGACTGGA
CGAAGGTCAGGGGAGAAGTGGTCAAAGGTACCAAGAACGCATGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0046540U4/U6 x U5 tri-snRNP complex
GO:0005688U6 snRNP
Vocabulary: Biological Process
TermDefinition
GO:0000398mRNA splicing, via spliceosome
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CAN33_46390CAN33_46390Aspergillus niger FDAARGOS_311gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_46390-T1.exon1CAN33_46390-T1.exon1Aspergillus niger FDAARGOS_311exon
CAN33_46390-T1.exon2CAN33_46390-T1.exon2Aspergillus niger FDAARGOS_311exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_46390-T1.cdsCAN33_46390-T1.cdsAspergillus niger FDAARGOS_311CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CAN33_46390-T1CAN33_46390-T1-proteinAspergillus niger FDAARGOS_311polypeptide


Properties
Property NameValue
DBxrefInterPro:IPR010920
DBxrefInterPro:IPR034103
DBxrefInterPro:IPR001163
DBxrefPFAM:PF01423
ProductLSM domain family protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger FDAARGOS_311 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NKJJ01000022.1supercontigNKJJ01000022.1:2633664..2634046 +
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