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Sequences
The following sequences are available for this feature:
mRNA from alignment at NKJJ01000022.1:3368654..3371005+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >CAN33_47540-T1 ID=CAN33_47540-T1|Name=CAN33_47540-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=2352bp|location=Sequence derived from alignment at NKJJ01000022.1:3368654..3371005+ (Aspergillus niger FDAARGOS_311)
ATGAGTGATAATCAGTTCCCTGCTCAGCCTCTGGGCTCTTCAGAAGTCCC
CAATGAGGGTCCTCCTGTCAAGAGACCCTGCACCATCGATACGCCACCGA
TTGCGTTGACGCCAGCCGACGATGGAAGCGACTTCTACAATACACCCTTG
GCTGTCGGCACACCCGCGGACAGTAGCGCTGTGAAAGACCAGGTTGATGG
CGCTCAGAACCCGACCAGTGAGCCGGATGCCGCTGCACACGTCCATCCAC
CTATTCCAGGATTGAATTTGGTCAATGATAACGTCCAAGATCTTCAACAA
CCACAGGCAACTGAGGCTACTGTATCACAGACGACCACAAATGTGAACAG
CGAGCAAAACGGTGCTGTATCTACCAACCAGTCTGTTCCCGCCCAGGGTG
AACCCGAGAAGATGGAGGAAACTAAGGCAGAGCCCACTACCGATGCTATG
GATGTGGATGCCAATGAGAAGCAGGAGCCCCAACAACCAGCGGAGGCACC
TGCCACTAATGGCGCAGAAGCTGCTCAGGACGAAGAAGATGACGAGCACC
CCGAGTGGGAAATTGATTCATCTCCCTACGAATCCTCTTCCGACGACTCC
TCCACAGACTCTTCCGATGACAGCGACGATGACGACGAAGACTACCCCAT
CCTGAGCCCCGAAGAACAAGCACGGATTTTGATGCAGGCGGAGCTTGGCT
CTGACGACGAAGGTGATGGAAAAGGCAAGACCGGCGGCCATCTGAGGACG
GCAAACGAAATGCCCGAAGAAGCACCTCCCATCCCTGAGGTTACCATCAC
ACCGGAGATGAAAATTGTGCATCTGGGTCAGGTGGAGGCGATCGTTGAGA
ACACCCTCCTTATTACTGCCAACACCAGCGGGGAGTACCAAGTGCTCGAA
GCCGGCTCCCTACTCTGTTTGGAGAACCGCAGTGTCGCCGGTGTGGTCTC
TGAGACTCTCGGAAGGGTCGAGAACCCTCTGTATGCCGTTCGGTACCCGA
CCGCGGCTGACATCGCCGAGCGTGGCTTGTCCAAGGGCACGAATGTCTAC
TACGTCGAGGAACACTCCACCTTCGTCTTCACTCAACCTCTCAAGGGCCT
GAAGGGAAGTGATGCCTCTAACTTCCACGACGAAGAGATTGCCGAGGATG
AAGTCGAGTTCTCCGACGACGAAGCCGAAGCAGAGTATAAGCGCAAGCTT
AAACAGAAGCGCCAGGAAAAGAAGGAGTCACGGAACGAAAACGGCCCAGC
AAGAGGCAGAAGGAACCCCCCGGGACCCTCCAAGCTCGGCCAAAGCGAAT
TGAACTACGACGACAACCCCGTCGACGACGGCTACACTCCGCTCGCCCGG
CCTAAGAACCTGCACGAGATGATGCGCCAACAGGAAGCCCCCGTTGAAGC
CGACGGCCACTCCGGCCCCAGCAGAAACAACTCCGGCTTCCGCGGTGGTG
GACGCGGTCGTGGCCGAGGATATGATCGTGGAGGTCGCGGTGGTGGTGGC
CGCGGTGGCCGCCCCTCCCACGATTCGGCTCCTCATCATCAAGATCGTCA
ACAGTCATACTACCAGCCCCAAGCGCAGGCCTCTCATCAGTCTCAACCTC
AAAGCCACCCCTACCCTCAAGCAGCGTACCCCACGAACCCGCAGGGTGCA
TACGCTCTCCCTCAGCAGTTCCCTCCCTTCGCAGCTTTCCAGCCGCAACA
ACCCCAGGCATACGGACAAGGTGCCATGCCAACAGCACCTTTCAATTTCC
AGATGCCCTTCCAACAGGCCTATCAACAACCAAACCCGTACCAGCAGCTT
CCTGCTAACGTGCACATCAACCCCTTGTTCTTGGCTGCCCTTCAGCAACA
ACAGCAGCAGCAGCAACAACAACAACAAGTACCAGGACAACCCCAACAAC
CCCAGCAACCGACGATGAACTTCGACCAAGTAAAAGCACAGTTGGATCTT
CTACGGCAATTAAGTAACAACCAGAACCAGAACCAGGGGCCTCCTCGGTC
GTGATTTGTGATGATATGATTGATTGATCTATTCATTGCTATATATGTGT
TTCATTTTGGGAATGGGCCTTGACTATGCTCAATTTTTTCGGGCCTTGCT
TGTCTAGTTATCTGGGGTCGGTTGCATTTTTGGAGCTACTAACTGGGCAT
CGTTTTTTTTTTTTGGATTCGGTTCCGGATGGGTAATCAAAAAGTTTCTT
TTGAACTACAATCGCTTCACGCTTCCTTAGAGCTTTCAATATTATCATGG
TCGAATGTACGGCGTACAGTGTACAGAAATACAATACTGATGGATCTTGA
TCTAATGTGGGGGAAAATTCGCAGAGTTTATGGTTATGATACAGAAGAGT
AA back to topCoding sequence (CDS) from alignment at NKJJ01000022.1:3368654..3371005+ >CAN33_47540-T1 ID=CAN33_47540-T1|Name=CAN33_47540-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=6516bp|location=Sequence derived from alignment at NKJJ01000022.1:3368654..3371005+ (Aspergillus niger FDAARGOS_311)
ATGAGTGATAATCAGTTCCCTGCTCAGCCTCTGGGCTCTTCAGAAGTCCC
CAATGAGGGTCCTCCTGTCAAGAGACCCTGCACCATCGATACGCCACCGA
TTGCGTTGACGCCAGCCGACGATGGAAGCGACTTCTACAATACACCCTTG
GCTGTCGGCACACCCGCGGACAGTAGCGCTGTGAAAGACCAGGTTGATGG
CGCTCAGAACCCGACCAGTGAGCCGGATGCCGCTGCACACGTCCATCCAC
CTATTCCAGGATTGAATTTGGTCAATGATAACGTCCAAGATCTTCAACAA
CCACAGGCAACTGAGGCTACTGTATCACAGACGACCACAAATGTGAACAG
CGAGCAAAACGGTGCTGTATCTACCAACCAGTCTGTTCCCGCCCAGGGTG
AACCCGAGAAGATGGAGGAAACTAAGGCAGAGCCCACTACCGATGCTATG
GATGTGGATGCCAATGAGAAGCAGGAGCCCCAACAACCAGCGGAGGCACC
TGCCACTAATGGCGCAGAAGCTGCTCAGGACGAAGAAGATGACGAGCACC
CCGAGTGGGAAATTGATTCATCTCCCTACGAATCCTCTTCCGACGACTCC
TCCACAGACTCTTCCGATGACAGCGACGATGACGACGAAGACTACCCCAT
CCTGAGCCCCGAAGAACAAGCACGGATTTTGATGCAGGCGGAGCTTGGCT
CTGACGACGAAGGTGATGGAAAAGGCAAGACCGGCGGCCATCTGAGGACG
GCAAACGAAATGCCCGAAGAAGCACCTCCCATCCCTGAGGTTACCATCAC
ACCGGAGATGAAAATTGTGCATCTGGGTCAGGTGGAGGCGATCGTTGAGA
ACACCCTCCTTATTACTGCCAACACCAGCGGGGAGTACCAAGTGCTCGAA
GCCGGCTCCCTACTCTGTTTGGAGAACCGCAGTGTCGCCGGTGTGGTCTC
TGAGACTCTCGGAAGGGTCGAGAACCCTCTGTATGCCGTTCGGTACCCGA
CCGCGGCTGACATCGCCGAGCGTGGCTTGTCCAAGGGCACGAATGTCTAC
TACGTCGAGGAACACTCCACCTTCGTCTTCACTCAACCTCTCAAGGGCCT
GAAGGGAAGTGATGCCTCTAACTTCCACGACGAAGAGATTGCCGAGGATG
AAGAAAAGAAGGAGTCACGGAACGAAAACGGCCCAGCAAGAGGCAGAAGG
AACCCCCCGGGACCCTCCAAGCTCGGCCAAAGCGAATTGAACTACGACGA
CAACCCCGTCGACGACGGCTACACTCCGCTCGCCCGGCCTAAGAACCTGC
ACGAGATGATGCGCCAACAGGAAGCCCCCTCATACTACCAGCCCCAAGCG
CAGGCCTCTCATCAGTCTCAACCTCAAAGCCACCCCTACCCTCAAGCAGC
GTACCCCACGAACCCGCAGGGTGCATACGCTCTCCCTCAGCAGTTCCCTC
CCTTCGCAGCTTTCCAGCCGCAACAACCCCAGGCATACGGACAAGGTGCC
ATGCCAACAGCACCTTTCAATTTCCAGATGCCCTTCCAACAGGCCTATCA
ACAACCAAACCCGTACCAGCAGCTTCCTGCTAACGTGCACATCAACCCCT
TAGTTTATGGTTATGATACAGAAGAGTAAATGAGTGATAATCAGTTCCCT
GCTCAGCCTCTGGGCTCTTCAGAAGTCCCCAATGAGGGTCCTCCTGTCAA
GAGACCCTGCACCATCGATACGCCACCGATTGCGTTGACGCCAGCCGACG
ATGGAAGCGACTTCTACAATACACCCTTGGCTGTCGGCACACCCGCGGAC
AGTAGCGCTGTGAAAGACCAGGTTGATGGCGCTCAGAACCCGACCAGTGA
GCCGGATGCCGCTGCACACGTCCATCCACCTATTCCAGGATTGAATTTGG
TCAATGATAACGTCCAAGATCTTCAACAACCACAGGCAACTGAGGCTACT
GTATCACAGACGACCACAAATGTGAACAGCGAGCAAAACGGTGCTGTATC
TACCAACCAGTCTGTTCCCGCCCAGGGTGAACCCGAGAAGATGGAGGAAA
CTAAGGCAGAGCCCACTACCGATGCTATGGATGTGGATGCCAATGAGAAG
CAGGAGCCCCAACAACCAGCGGAGGCACCTGCCACTAATGGCGCAGAAGC
TGCTCAGGACGAAGAAGATGACGAGCACCCCGAGTGGGAAATTGATTCAT
CTCCCTACGAATCCTCTTCCGACGACTCCTCCACAGACTCTTCCGATGAC
AGCGACGATGACGACGAAGACTACCCCATCCTGAGCCCCGAAGAACAAGC
ACGGATTTTGATGCAGGCGGAGCTTGGCTCTGACGACGAAGGTGATGGAA
AAGGCAAGACCGGCGGCCATCTGAGGACGGCAAACGAAATGCCCGAAGAA
GCACCTCCCATCCCTGAGGTTACCATCACACCGGAGATGAAAATTGTGCA
TCTGGGTCAGGTGGAGGCGATCGTTGAGAACACCCTCCTTATTACTGCCA
ACACCAGCGGGGAGTACCAAGTGCTCGAAGCCGGCTCCCTACTCTGTTTG
GAGAACCGCAGTGTCGCCGGTGTGGTCTCTGAGACTCTCGGAAGGGTCGA
GAACCCTCTGTATGCCGTTCGGTACCCGACCGCGGCTGACATCGCCGAGC
GTGGCTTGTCCAAGGGCACGAATGTCTACTACGTCGAGGAACACTCCACC
TTCGTCTTCACTCAACCTCTCAAGGGCCTGAAGGGAAGTGATGCCTCTAA
CTTCCACGACGAAGAGATTGCCGAGGATGAAGAAAAGAAGGAGTCACGGA
ACGAAAACGGCCCAGCAAGAGGCAGAAGGAACCCCCCGGGACCCTCCAAG
CTCGGCCAAAGCGAATTGAACTACGACGACAACCCCGTCGACGACGGCTA
CACTCCGCTCGCCCGGCCTAAGAACCTGCACGAGATGATGCGCCAACAGG
AAGCCCCCTCATACTACCAGCCCCAAGCGCAGGCCTCTCATCAGTCTCAA
CCTCAAAGCCACCCCTACCCTCAAGCAGCGTACCCCACGAACCCGCAGGG
TGCATACGCTCTCCCTCAGCAGTTCCCTCCCTTCGCAGCTTTCCAGCCGC
AACAACCCCAGGCATACGGACAAGGTGCCATGCCAACAGCACCTTTCAAT
TTCCAGATGCCCTTCCAACAGGCCTATCAACAACCAAACCCGTACCAGCA
GCTTCCTGCTAACGTGCACATCAACCCCTTAGTTTATGGTTATGATACAG
AAGAGTAAATGAGTGATAATCAGTTCCCTGCTCAGCCTCTGGGCTCTTCA
GAAGTCCCCAATGAGGGTCCTCCTGTCAAGAGACCCTGCACCATCGATAC
GCCACCGATTGCGTTGACGCCAGCCGACGATGGAAGCGACTTCTACAATA
CACCCTTGGCTGTCGGCACACCCGCGGACAGTAGCGCTGTGAAAGACCAG
GTTGATGGCGCTCAGAACCCGACCAGTGAGCCGGATGCCGCTGCACACGT
CCATCCACCTATTCCAGGATTGAATTTGGTCAATGATAACGTCCAAGATC
TTCAACAACCACAGGCAACTGAGGCTACTGTATCACAGACGACCACAAAT
GTGAACAGCGAGCAAAACGGTGCTGTATCTACCAACCAGTCTGTTCCCGC
CCAGGGTGAACCCGAGAAGATGGAGGAAACTAAGGCAGAGCCCACTACCG
ATGCTATGGATGTGGATGCCAATGAGAAGCAGGAGCCCCAACAACCAGCG
GAGGCACCTGCCACTAATGGCGCAGAAGCTGCTCAGGACGAAGAAGATGA
CGAGCACCCCGAGTGGGAAATTGATTCATCTCCCTACGAATCCTCTTCCG
ACGACTCCTCCACAGACTCTTCCGATGACAGCGACGATGACGACGAAGAC
TACCCCATCCTGAGCCCCGAAGAACAAGCACGGATTTTGATGCAGGCGGA
GCTTGGCTCTGACGACGAAGGTGATGGAAAAGGCAAGACCGGCGGCCATC
TGAGGACGGCAAACGAAATGCCCGAAGAAGCACCTCCCATCCCTGAGGTT
ACCATCACACCGGAGATGAAAATTGTGCATCTGGGTCAGGTGGAGGCGAT
CGTTGAGAACACCCTCCTTATTACTGCCAACACCAGCGGGGAGTACCAAG
TGCTCGAAGCCGGCTCCCTACTCTGTTTGGAGAACCGCAGTGTCGCCGGT
GTGGTCTCTGAGACTCTCGGAAGGGTCGAGAACCCTCTGTATGCCGTTCG
GTACCCGACCGCGGCTGACATCGCCGAGCGTGGCTTGTCCAAGGGCACGA
ATGTCTACTACGTCGAGGAACACTCCACCTTCGTCTTCACTCAACCTCTC
AAGGGCCTGAAGGGAAGTGATGCCTCTAACTTCCACGACGAAGAGATTGC
CGAGGATGAAGAAAAGAAGGAGTCACGGAACGAAAACGGCCCAGCAAGAG
GCAGAAGGAACCCCCCGGGACCCTCCAAGCTCGGCCAAAGCGAATTGAAC
TACGACGACAACCCCGTCGACGACGGCTACACTCCGCTCGCCCGGCCTAA
GAACCTGCACGAGATGATGCGCCAACAGGAAGCCCCCTCATACTACCAGC
CCCAAGCGCAGGCCTCTCATCAGTCTCAACCTCAAAGCCACCCCTACCCT
CAAGCAGCGTACCCCACGAACCCGCAGGGTGCATACGCTCTCCCTCAGCA
GTTCCCTCCCTTCGCAGCTTTCCAGCCGCAACAACCCCAGGCATACGGAC
AAGGTGCCATGCCAACAGCACCTTTCAATTTCCAGATGCCCTTCCAACAG
GCCTATCAACAACCAAACCCGTACCAGCAGCTTCCTGCTAACGTGCACAT
CAACCCCTTAGTTTATGGTTATGATACAGAAGAGTAAATGAGTGATAATC
AGTTCCCTGCTCAGCCTCTGGGCTCTTCAGAAGTCCCCAATGAGGGTCCT
CCTGTCAAGAGACCCTGCACCATCGATACGCCACCGATTGCGTTGACGCC
AGCCGACGATGGAAGCGACTTCTACAATACACCCTTGGCTGTCGGCACAC
CCGCGGACAGTAGCGCTGTGAAAGACCAGGTTGATGGCGCTCAGAACCCG
ACCAGTGAGCCGGATGCCGCTGCACACGTCCATCCACCTATTCCAGGATT
GAATTTGGTCAATGATAACGTCCAAGATCTTCAACAACCACAGGCAACTG
AGGCTACTGTATCACAGACGACCACAAATGTGAACAGCGAGCAAAACGGT
GCTGTATCTACCAACCAGTCTGTTCCCGCCCAGGGTGAACCCGAGAAGAT
GGAGGAAACTAAGGCAGAGCCCACTACCGATGCTATGGATGTGGATGCCA
ATGAGAAGCAGGAGCCCCAACAACCAGCGGAGGCACCTGCCACTAATGGC
GCAGAAGCTGCTCAGGACGAAGAAGATGACGAGCACCCCGAGTGGGAAAT
TGATTCATCTCCCTACGAATCCTCTTCCGACGACTCCTCCACAGACTCTT
CCGATGACAGCGACGATGACGACGAAGACTACCCCATCCTGAGCCCCGAA
GAACAAGCACGGATTTTGATGCAGGCGGAGCTTGGCTCTGACGACGAAGG
TGATGGAAAAGGCAAGACCGGCGGCCATCTGAGGACGGCAAACGAAATGC
CCGAAGAAGCACCTCCCATCCCTGAGGTTACCATCACACCGGAGATGAAA
ATTGTGCATCTGGGTCAGGTGGAGGCGATCGTTGAGAACACCCTCCTTAT
TACTGCCAACACCAGCGGGGAGTACCAAGTGCTCGAAGCCGGCTCCCTAC
TCTGTTTGGAGAACCGCAGTGTCGCCGGTGTGGTCTCTGAGACTCTCGGA
AGGGTCGAGAACCCTCTGTATGCCGTTCGGTACCCGACCGCGGCTGACAT
CGCCGAGCGTGGCTTGTCCAAGGGCACGAATGTCTACTACGTCGAGGAAC
ACTCCACCTTCGTCTTCACTCAACCTCTCAAGGGCCTGAAGGGAAGTGAT
GCCTCTAACTTCCACGACGAAGAGATTGCCGAGGATGAAGAAAAGAAGGA
GTCACGGAACGAAAACGGCCCAGCAAGAGGCAGAAGGAACCCCCCGGGAC
CCTCCAAGCTCGGCCAAAGCGAATTGAACTACGACGACAACCCCGTCGAC
GACGGCTACACTCCGCTCGCCCGGCCTAAGAACCTGCACGAGATGATGCG
CCAACAGGAAGCCCCCTCATACTACCAGCCCCAAGCGCAGGCCTCTCATC
AGTCTCAACCTCAAAGCCACCCCTACCCTCAAGCAGCGTACCCCACGAAC
CCGCAGGGTGCATACGCTCTCCCTCAGCAGTTCCCTCCCTTCGCAGCTTT
CCAGCCGCAACAACCCCAGGCATACGGACAAGGTGCCATGCCAACAGCAC
CTTTCAATTTCCAGATGCCCTTCCAACAGGCCTATCAACAACCAAACCCG
TACCAGCAGCTTCCTGCTAACGTGCACATCAACCCCTTAGTTTATGGTTA
TGATACAGAAGAGTAA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0001522 | pseudouridine synthesis |
| GO:0042254 | ribosome biogenesis |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG09263G4R |
| DBxref | InterPro:IPR009000 |
| DBxref | InterPro:IPR007504 |
| DBxref | InterPro:IPR038664 |
| DBxref | PFAM:PF04410 |
| Product | Gar1/Naf1 RNA binding region family protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| NKJJ01000022.1 | supercontig | NKJJ01000022.1:3368654..3371005 + |
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