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CAN33_49860-T1, CAN33_49860-T1 (mRNA) Aspergillus niger FDAARGOS_311

Overview
NameCAN33_49860-T1
Unique NameCAN33_49860-T1
TypemRNA
OrganismAspergillus niger FDAARGOS_311
Sequences
The following sequences are available for this feature:

mRNA from alignment at NKJJ01000022.1:4838010..4839307-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>CAN33_49860-T1 ID=CAN33_49860-T1|Name=CAN33_49860-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=1298bp|location=Sequence derived from alignment at NKJJ01000022.1:4838010..4839307- (Aspergillus niger FDAARGOS_311)
ATGCGCGCCAGCATTCTACCGTTGACTCTGTTCTTGGCCACTCTGGCCGG
GGCGCAACTCTCCGGCCCCGTTGGCCCGCTAGTGGACTACAGCACCAAAG
CCAGAAACCAGACCTGCAATATCATCGATTACGGGGCTGTCGCAGATGGT
AAAACGGATATATCGCAGGCTCTACTTGATGCCTGGGGAAACTGTTCCGT
GGGGGGACTGGTCTACATCCCACCCGGTAACTACTCGCTGGCCGAGGACA
TTGAGCTCAAGCACGGCCAGTCCTCTGCAATTCAGCTAGACGGTGTGGTT
ATGCGCGGACACCGCGGCTCGTACCAGATGATCCTTATCCGTGACTGCAA
TGACTTCGAATTTTTCAGCGGCAATTCCCGCGGGGCCATTCAGGGCTTTG
GTTACGAATATCTGCAGAATGACACCTACGGCGAGAGACTCTTGCGCATC
CAAGAGGTTAACAATTTCTCGGTGCATGGATTCGCACTAATTGACTCGCC
TTCCTACTACATTGTTTTCGATACGGTCACCAGTGGGGAGGTATATAACA
TCTTGATCCGCGGCGTGACATCTGTGGGAGCGACAGATGCTATCGACGTA
TGGGGAGAGAACATGTGGTTCCATGACATTGAAGTGAGCAACGGCGATGA
ATGTGTCACCGTCAAGTCTCCGGCGCACAATTATCTGATTGAGAACATCT
ACTGCAATCTCAGTGGTGGGACCGCGATTGGATCCTTAGGCACGGGCACC
AACATTTCCGACATCCACTACCGCAATCTCTACATGAACCAAGCAGATGC
GTGCTTTCTGAAATCCAACAATGGGGATGGGATTGTCAAAAATATCATCT
GGGAGAATGTCATAGTCCACGGCGGTCCGTACCCGCTGGCCATAGACGAG
GCCTGGGGAGATGATCGAGGATCCGTAGGAGTTCAAGTGTCCAACCTCAC
ATTCCGAGTAAGTACACGATAATATTTCAATGTCTTAAGAGATCCTAATT
TGCTTTGTTATATAGAACTGGCACGGAGAATCCGTGAGCGCCTCACGCCC
AGTCATCCGCCTACAATGTGACTCCGACGTCCCGTGCTACGATATTACCA
TCGAAAACGTGAACCTGTGGGCCAACGACAGCAACTATGTGGTTTGGCAG
TGCGAGAACGCCTATGGAGATGGGGCCTGTCTCTCTAGTGCAGAGGGAAC
AAAAGATTTGAAAACCTTTACCAGCAAACAAACTATAACTGCCACCCCGT
ATGTGACTTGTCCATTCTTTTCCACCGAAATTGCTAACAAGAAGATAG
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Coding sequence (CDS) from alignment at NKJJ01000022.1:4838010..4839307-

>CAN33_49860-T1 ID=CAN33_49860-T1|Name=CAN33_49860-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=3582bp|location=Sequence derived from alignment at NKJJ01000022.1:4838010..4839307- (Aspergillus niger FDAARGOS_311)
ATAGAACTGGCACGGAGAATCCGTGAGCGCCTCACGCCCAGTCATCCGCC
TACAATGTGACTCCGACGTCCCGTGCTACGATATTACCATCGAAAACGTG
AACCTGTGGGCCAACGACAGCAACTATGTGGTTTGGCAGTGCGAGAACGC
CTATGGAGATGGGGCCTGTCTCTCTAGTGCAGAGGGAACAAAAGATTTGA
AAACCTTTACCAGCAAACAAACTATAACTGCCACCCCATGCGCGCCAGCA
TTCTACCGTTGACTCTGTTCTTGGCCACTCTGGCCGGGGCGCAACTCTCC
GGCCCCGTTGGCCCGCTAGTGGACTACAGCACCAAAGCCAGAAACCAGAC
CTGCAATATCATCGATTACGGGGCTGTCGCAGATGGTAAAACGGATATAT
CGCAGGCTCTACTTGATGCCTGGGGAAACTGTTCCGTGGGGGGACTGGTC
TACATCCCACCCGGTAACTACTCGCTGGCCGAGGACATTGAGCTCAAGCA
CGGCCAGTCCTCTGCAATTCAGCTAGACGGTGTGGTTATGCGCGGACACC
GCGGCTCGTACCAGATGATCCTTATCCGTGACTGCAATGACTTCGAATTT
TTCAGCGGCAATTCCCGCGGGGCCATTCAGGGCTTTGGTTACGAATATCT
GCAGAATGACACCTACGGCGAGAGACTCTTGCGCATCCAAGAGGTTAACA
ATTTCTCGGTGCATGGATTCGCACTAATTGACTCGCCTTCCTACTACATT
GTTTTCGATACGGTCACCAGTGGGGAGGTATATAACATCTTGATCCGCGG
CGTGACATCTGTGGGAGCGACAGATGCTATCGACGTATGGGGAGAGAACA
TGTGGTTCCATGACATTGAAGTGAGCAACGGCGATGAATGTGTCACCGTC
AAGTCTCCGGCGCACAATTATCTGATTGAGAACATCTACTGCAATCTCAG
TGGTGGGACCGCGATTGGATCCTTAGGCACGGGCACCAACATTTCCGACA
TCCACTACCGCAATCTCTACATGAACCAAGCAGATGCGTGCTTTCTGAAA
TCCAACAATGGGGATGGGATTGTCAAAAATATCATCTGGGAGAATGTCAT
AGTCCACGGCGGTCCGTACCCGCTGGCCATAGACGAGGCCTGGGGAGATG
ATCGAGGATCCGTAGGAGTTCAAGTGTCCAACCTCACATTCCGAATAGAA
CTGGCACGGAGAATCCGTGAGCGCCTCACGCCCAGTCATCCGCCTACAAT
GTGACTCCGACGTCCCGTGCTACGATATTACCATCGAAAACGTGAACCTG
TGGGCCAACGACAGCAACTATGTGGTTTGGCAGTGCGAGAACGCCTATGG
AGATGGGGCCTGTCTCTCTAGTGCAGAGGGAACAAAAGATTTGAAAACCT
TTACCAGCAAACAAACTATAACTGCCACCCCATGCGCGCCAGCATTCTAC
CGTTGACTCTGTTCTTGGCCACTCTGGCCGGGGCGCAACTCTCCGGCCCC
GTTGGCCCGCTAGTGGACTACAGCACCAAAGCCAGAAACCAGACCTGCAA
TATCATCGATTACGGGGCTGTCGCAGATGGTAAAACGGATATATCGCAGG
CTCTACTTGATGCCTGGGGAAACTGTTCCGTGGGGGGACTGGTCTACATC
CCACCCGGTAACTACTCGCTGGCCGAGGACATTGAGCTCAAGCACGGCCA
GTCCTCTGCAATTCAGCTAGACGGTGTGGTTATGCGCGGACACCGCGGCT
CGTACCAGATGATCCTTATCCGTGACTGCAATGACTTCGAATTTTTCAGC
GGCAATTCCCGCGGGGCCATTCAGGGCTTTGGTTACGAATATCTGCAGAA
TGACACCTACGGCGAGAGACTCTTGCGCATCCAAGAGGTTAACAATTTCT
CGGTGCATGGATTCGCACTAATTGACTCGCCTTCCTACTACATTGTTTTC
GATACGGTCACCAGTGGGGAGGTATATAACATCTTGATCCGCGGCGTGAC
ATCTGTGGGAGCGACAGATGCTATCGACGTATGGGGAGAGAACATGTGGT
TCCATGACATTGAAGTGAGCAACGGCGATGAATGTGTCACCGTCAAGTCT
CCGGCGCACAATTATCTGATTGAGAACATCTACTGCAATCTCAGTGGTGG
GACCGCGATTGGATCCTTAGGCACGGGCACCAACATTTCCGACATCCACT
ACCGCAATCTCTACATGAACCAAGCAGATGCGTGCTTTCTGAAATCCAAC
AATGGGGATGGGATTGTCAAAAATATCATCTGGGAGAATGTCATAGTCCA
CGGCGGTCCGTACCCGCTGGCCATAGACGAGGCCTGGGGAGATGATCGAG
GATCCGTAGGAGTTCAAGTGTCCAACCTCACATTCCGAATAGAACTGGCA
CGGAGAATCCGTGAGCGCCTCACGCCCAGTCATCCGCCTACAATGTGACT
CCGACGTCCCGTGCTACGATATTACCATCGAAAACGTGAACCTGTGGGCC
AACGACAGCAACTATGTGGTTTGGCAGTGCGAGAACGCCTATGGAGATGG
GGCCTGTCTCTCTAGTGCAGAGGGAACAAAAGATTTGAAAACCTTTACCA
GCAAACAAACTATAACTGCCACCCCATGCGCGCCAGCATTCTACCGTTGA
CTCTGTTCTTGGCCACTCTGGCCGGGGCGCAACTCTCCGGCCCCGTTGGC
CCGCTAGTGGACTACAGCACCAAAGCCAGAAACCAGACCTGCAATATCAT
CGATTACGGGGCTGTCGCAGATGGTAAAACGGATATATCGCAGGCTCTAC
TTGATGCCTGGGGAAACTGTTCCGTGGGGGGACTGGTCTACATCCCACCC
GGTAACTACTCGCTGGCCGAGGACATTGAGCTCAAGCACGGCCAGTCCTC
TGCAATTCAGCTAGACGGTGTGGTTATGCGCGGACACCGCGGCTCGTACC
AGATGATCCTTATCCGTGACTGCAATGACTTCGAATTTTTCAGCGGCAAT
TCCCGCGGGGCCATTCAGGGCTTTGGTTACGAATATCTGCAGAATGACAC
CTACGGCGAGAGACTCTTGCGCATCCAAGAGGTTAACAATTTCTCGGTGC
ATGGATTCGCACTAATTGACTCGCCTTCCTACTACATTGTTTTCGATACG
GTCACCAGTGGGGAGGTATATAACATCTTGATCCGCGGCGTGACATCTGT
GGGAGCGACAGATGCTATCGACGTATGGGGAGAGAACATGTGGTTCCATG
ACATTGAAGTGAGCAACGGCGATGAATGTGTCACCGTCAAGTCTCCGGCG
CACAATTATCTGATTGAGAACATCTACTGCAATCTCAGTGGTGGGACCGC
GATTGGATCCTTAGGCACGGGCACCAACATTTCCGACATCCACTACCGCA
ATCTCTACATGAACCAAGCAGATGCGTGCTTTCTGAAATCCAACAATGGG
GATGGGATTGTCAAAAATATCATCTGGGAGAATGTCATAGTCCACGGCGG
TCCGTACCCGCTGGCCATAGACGAGGCCTGGGGAGATGATCGAGGATCCG
TAGGAGTTCAAGTGTCCAACCTCACATTCCGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0004650polygalacturonase activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CAN33_49860CAN33_49860Aspergillus niger FDAARGOS_311gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CAN33_49860-T1CAN33_49860-T1-proteinAspergillus niger FDAARGOS_311polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_49860-T1.cdsCAN33_49860-T1.cdsAspergillus niger FDAARGOS_311CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_49860-T1.exon3CAN33_49860-T1.exon3Aspergillus niger FDAARGOS_311exon
CAN33_49860-T1.exon2CAN33_49860-T1.exon2Aspergillus niger FDAARGOS_311exon
CAN33_49860-T1.exon1CAN33_49860-T1.exon1Aspergillus niger FDAARGOS_311exon


Properties
Property NameValue
NoteSECRETED:SignalP(1-18)
NoteCAZy:GH28
DBxrefInterPro:IPR011050
DBxrefInterPro:IPR012334
DBxrefInterPro:IPR000743
DBxrefPFAM:PF12708
DBxrefPFAM:PF00295
ProductGlycosyl hydrolases family 28 family protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger FDAARGOS_311 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NKJJ01000022.1supercontigNKJJ01000022.1:4838010..4839307 -
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