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CAN33_52165-T1, CAN33_52165-T1 (mRNA) Aspergillus niger FDAARGOS_311

Overview
NameCAN33_52165-T1
Unique NameCAN33_52165-T1
TypemRNA
OrganismAspergillus niger FDAARGOS_311
Sequences
The following sequences are available for this feature:

mRNA from alignment at NKJJ01000020.1:1330951..1332080-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>CAN33_52165-T1 ID=CAN33_52165-T1|Name=CAN33_52165-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=1130bp|location=Sequence derived from alignment at NKJJ01000020.1:1330951..1332080- (Aspergillus niger FDAARGOS_311)
ATGTCGTTGACAAATTGCCGTTTCTACGAGGAGAAGTATCCGGAGGTTGA
CAGCTATGTCATGGTCAATGTGAAGCAGGTATGCATTGCTACAGGTCATG
TGGTTCTTTCAGGGTTCGAAAACATCCTCTAATACTTGTCTTTTCACCCC
TCACAGATCGCCGAAATGGGCGCATACGTTAAGCTCCTCGAGTATGACAA
CATCGACGGCATGATTCTGCTCTCCGAATTGTCGCGCAGACGTATCCGTA
GTATCCAGAAGCTTATTCGTATCGGCCGTAACGAGGTCGTCATCGTGCTT
CGTGTGGACAAGGAGAAGGGCAAGTCGGAGTCCTCTGGATGACAATATCA
GCGTCAATTTACTGACTCTTTTTTCTCTACGTCTTTAGGTTACATTGATC
TTTCCAAGCGTCGAGTTTCTCCCGAAGATGTTGTCAAGTGCGAGGAAAGA
TACAACAAGAGCAAGGCAGTCCACTCCATCATGCGCCACGTTGCCGAGGC
CACTCAGACTCCTCTTGAGACCCTATACCAGCAGATCGGATGGCCTTTGA
ACCGCAAATACGGACACTCCCACGATGCGTTCAAGATCTCCATCACGTAA
GGAAACCTCTCGACTCAAGGCTATCGCGGACCGAGTACTCATAACATCAC
AGGAACCCCGACGTGTGGAACGAGGTTGAATTCCCTAGCGAGTCCGTGAA
GAAGGAGTTGACGCACTACATCAGCAAGAGACTTACTCCTCACCCGACCA
AGGTCCGTGCCGATATTGAGGTTACCTGCTTCGGTTACGACGGTATCGAT
GCCGTCAAGGATGCCCTGCGCACCGCCGAGGCCAACAACACCCCTGAAAC
CCAGATCAAGGTTAAGCTGGTTGCCCCGCCACTCTACGTCTTGACCAGCC
AGTGCTTGGACAAGGCTATTGGTATTCAGATGCTCGAGGAGGCCATTCAA
AGGATCGAGGCCAGGATCAAGGAGTCTGGCGGTGGCTGCATCGTTAAGAT
GGCTCCCAAGGCTGTTACTGAGCACGATGATGCTGCTCTTCAGGAGCTCA
TGGAGAAGCGTGAGCGTGAGAACATGGAAGTCAGCGGCGACGAGAGCATG
TCCGAGAGCGATGAGGGCGTTCCCGAGTAA
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Coding sequence (CDS) from alignment at NKJJ01000020.1:1330951..1332080-

>CAN33_52165-T1 ID=CAN33_52165-T1|Name=CAN33_52165-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=3636bp|location=Sequence derived from alignment at NKJJ01000020.1:1330951..1332080- (Aspergillus niger FDAARGOS_311)
GAACCCCGACGTGTGGAACGAGGTTGAATTCCCTAGCGAGTCCGTGAAGA
AGGAGTTGACGCACTACATCAGCAAGAGACTTACTCCTCACCCGACCAAG
GTCCGTGCCGATATTGAGGTTACCTGCTTCGGTTACGACGGTATCGATGC
CGTCAAGGATGCCCTGCGCACCGCCGAGGCCAACAACACCCCTGAAACCC
AGATCAAGGTTAAGCTGGTTGCCCCGCCACTCTACGTCTTGACCAGCCAG
TGCTTGGACAAGGCTATTGGTATTCAGATGCTCGAGGAGGCCATTCAAAG
GATCGAGGCCAGGATCAAGGAGTCTGGCGGTGGCTGCATCGTTAAGATGG
CTCCCAAGGCTGTTACTGAGCACGATGATGCTGCTCTTCAGGAGCTCATG
GAGAAGCGTGAGCGTGAGAACATGGAAGTCAGCGGCGACGAGAGCATGTC
CGAGAGCGATGAGGGCGTTCCCGAGTAAGTTACATTGATCTTTCCAAGCG
TCGAGTTTCTCCCGAAGATGTTGTCAAGTGCGAGGAAAGATACAACAAGA
GCAAGGCAGTCCACTCCATCATGCGCCACGTTGCCGAGGCCACTCAGACT
CCTCTTGAGACCCTATACCAGCAGATCGGATGGCCTTTGAACCGCAAATA
CGGACACTCCCACGATGCGTTCAAGATCTCCATCACATCGCCGAAATGGG
CGCATACGTTAAGCTCCTCGAGTATGACAACATCGACGGCATGATTCTGC
TCTCCGAATTGTCGCGCAGACGTATCCGTAGTATCCAGAAGCTTATTCGT
ATCGGCCGTAACGAGGTCGTCATCGTGCTTCATGTCGTTGACAAATTGCC
GTTTCTACGAGGAGAAGTATCCGGAGGTTGACAGCTATGTCATGGTCAAT
GTGAAGCAGGAACCCCGACGTGTGGAACGAGGTTGAATTCCCTAGCGAGT
CCGTGAAGAAGGAGTTGACGCACTACATCAGCAAGAGACTTACTCCTCAC
CCGACCAAGGTCCGTGCCGATATTGAGGTTACCTGCTTCGGTTACGACGG
TATCGATGCCGTCAAGGATGCCCTGCGCACCGCCGAGGCCAACAACACCC
CTGAAACCCAGATCAAGGTTAAGCTGGTTGCCCCGCCACTCTACGTCTTG
ACCAGCCAGTGCTTGGACAAGGCTATTGGTATTCAGATGCTCGAGGAGGC
CATTCAAAGGATCGAGGCCAGGATCAAGGAGTCTGGCGGTGGCTGCATCG
TTAAGATGGCTCCCAAGGCTGTTACTGAGCACGATGATGCTGCTCTTCAG
GAGCTCATGGAGAAGCGTGAGCGTGAGAACATGGAAGTCAGCGGCGACGA
GAGCATGTCCGAGAGCGATGAGGGCGTTCCCGAGTAAGTTACATTGATCT
TTCCAAGCGTCGAGTTTCTCCCGAAGATGTTGTCAAGTGCGAGGAAAGAT
ACAACAAGAGCAAGGCAGTCCACTCCATCATGCGCCACGTTGCCGAGGCC
ACTCAGACTCCTCTTGAGACCCTATACCAGCAGATCGGATGGCCTTTGAA
CCGCAAATACGGACACTCCCACGATGCGTTCAAGATCTCCATCACATCGC
CGAAATGGGCGCATACGTTAAGCTCCTCGAGTATGACAACATCGACGGCA
TGATTCTGCTCTCCGAATTGTCGCGCAGACGTATCCGTAGTATCCAGAAG
CTTATTCGTATCGGCCGTAACGAGGTCGTCATCGTGCTTCATGTCGTTGA
CAAATTGCCGTTTCTACGAGGAGAAGTATCCGGAGGTTGACAGCTATGTC
ATGGTCAATGTGAAGCAGGAACCCCGACGTGTGGAACGAGGTTGAATTCC
CTAGCGAGTCCGTGAAGAAGGAGTTGACGCACTACATCAGCAAGAGACTT
ACTCCTCACCCGACCAAGGTCCGTGCCGATATTGAGGTTACCTGCTTCGG
TTACGACGGTATCGATGCCGTCAAGGATGCCCTGCGCACCGCCGAGGCCA
ACAACACCCCTGAAACCCAGATCAAGGTTAAGCTGGTTGCCCCGCCACTC
TACGTCTTGACCAGCCAGTGCTTGGACAAGGCTATTGGTATTCAGATGCT
CGAGGAGGCCATTCAAAGGATCGAGGCCAGGATCAAGGAGTCTGGCGGTG
GCTGCATCGTTAAGATGGCTCCCAAGGCTGTTACTGAGCACGATGATGCT
GCTCTTCAGGAGCTCATGGAGAAGCGTGAGCGTGAGAACATGGAAGTCAG
CGGCGACGAGAGCATGTCCGAGAGCGATGAGGGCGTTCCCGAGTAAGTTA
CATTGATCTTTCCAAGCGTCGAGTTTCTCCCGAAGATGTTGTCAAGTGCG
AGGAAAGATACAACAAGAGCAAGGCAGTCCACTCCATCATGCGCCACGTT
GCCGAGGCCACTCAGACTCCTCTTGAGACCCTATACCAGCAGATCGGATG
GCCTTTGAACCGCAAATACGGACACTCCCACGATGCGTTCAAGATCTCCA
TCACATCGCCGAAATGGGCGCATACGTTAAGCTCCTCGAGTATGACAACA
TCGACGGCATGATTCTGCTCTCCGAATTGTCGCGCAGACGTATCCGTAGT
ATCCAGAAGCTTATTCGTATCGGCCGTAACGAGGTCGTCATCGTGCTTCA
TGTCGTTGACAAATTGCCGTTTCTACGAGGAGAAGTATCCGGAGGTTGAC
AGCTATGTCATGGTCAATGTGAAGCAGGAACCCCGACGTGTGGAACGAGG
TTGAATTCCCTAGCGAGTCCGTGAAGAAGGAGTTGACGCACTACATCAGC
AAGAGACTTACTCCTCACCCGACCAAGGTCCGTGCCGATATTGAGGTTAC
CTGCTTCGGTTACGACGGTATCGATGCCGTCAAGGATGCCCTGCGCACCG
CCGAGGCCAACAACACCCCTGAAACCCAGATCAAGGTTAAGCTGGTTGCC
CCGCCACTCTACGTCTTGACCAGCCAGTGCTTGGACAAGGCTATTGGTAT
TCAGATGCTCGAGGAGGCCATTCAAAGGATCGAGGCCAGGATCAAGGAGT
CTGGCGGTGGCTGCATCGTTAAGATGGCTCCCAAGGCTGTTACTGAGCAC
GATGATGCTGCTCTTCAGGAGCTCATGGAGAAGCGTGAGCGTGAGAACAT
GGAAGTCAGCGGCGACGAGAGCATGTCCGAGAGCGATGAGGGCGTTCCCG
AGTAAGTTACATTGATCTTTCCAAGCGTCGAGTTTCTCCCGAAGATGTTG
TCAAGTGCGAGGAAAGATACAACAAGAGCAAGGCAGTCCACTCCATCATG
CGCCACGTTGCCGAGGCCACTCAGACTCCTCTTGAGACCCTATACCAGCA
GATCGGATGGCCTTTGAACCGCAAATACGGACACTCCCACGATGCGTTCA
AGATCTCCATCACATCGCCGAAATGGGCGCATACGTTAAGCTCCTCGAGT
ATGACAACATCGACGGCATGATTCTGCTCTCCGAATTGTCGCGCAGACGT
ATCCGTAGTATCCAGAAGCTTATTCGTATCGGCCGTAACGAGGTCGTCAT
CGTGCTTCATGTCGTTGACAAATTGCCGTTTCTACGAGGAGAAGTATCCG
GAGGTTGACAGCTATGTCATGGTCAATGTGAAGCAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0003743translation initiation factor activity
GO:0003723RNA binding
GO:0003676nucleic acid binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CAN33_52165CAN33_52165Aspergillus niger FDAARGOS_311gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CAN33_52165-T1CAN33_52165-T1-proteinAspergillus niger FDAARGOS_311polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_52165-T1.cdsCAN33_52165-T1.cdsAspergillus niger FDAARGOS_311CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_52165-T1.exon4CAN33_52165-T1.exon4Aspergillus niger FDAARGOS_311exon
CAN33_52165-T1.exon3CAN33_52165-T1.exon3Aspergillus niger FDAARGOS_311exon
CAN33_52165-T1.exon2CAN33_52165-T1.exon2Aspergillus niger FDAARGOS_311exon
CAN33_52165-T1.exon1CAN33_52165-T1.exon1Aspergillus niger FDAARGOS_311exon


Properties
Property NameValue
NoteantiSMASH:Cluster_10000201.3
NoteBUSCO:EOG09263CAH
DBxrefInterPro:IPR012340
DBxrefInterPro:IPR011488
DBxrefInterPro:IPR024055
DBxrefInterPro:IPR003029
DBxrefInterPro:IPR024054
DBxrefPFAM:PF00575
DBxrefPFAM:PF07541
ProductEukaryotic translation initiation factor 2 alpha subunit family protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger FDAARGOS_311 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NKJJ01000020.1supercontigNKJJ01000020.1:1330951..1332080 -
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