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CAN33_53210-T1, CAN33_53210-T1 (mRNA) Aspergillus niger FDAARGOS_311

Overview
NameCAN33_53210-T1
Unique NameCAN33_53210-T1
TypemRNA
OrganismAspergillus niger FDAARGOS_311
Sequences
The following sequences are available for this feature:

mRNA from alignment at NKJJ01000020.1:1993206..1993807-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>CAN33_53210-T1 ID=CAN33_53210-T1|Name=CAN33_53210-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=602bp|location=Sequence derived from alignment at NKJJ01000020.1:1993206..1993807- (Aspergillus niger FDAARGOS_311)
ATGCAGATCTTCGTCAAGACCCTTACGGGTAAGACTATCACCCTCGAGGT
GGAGTCCTCGGACACCATTGACAATGTCAAGTCCAAGATCCAGGGTAAGC
ATACACACACACCCCTACAATCACCGGAATTACAATCAAACAACATTTAC
TAATGATTTTGTTCAGACAAGGAGGGTATCCCCCCGGACCAGCAGCGTCT
GATCTTCGCTGGTAAGCAGCTCGAGGACGGCCGTACTCTTTCGGACTACA
ACATCCAGAAGGAGTCCACCCTCCACTTGGTGCTCCGCCTGCGTGGTGGT
GGTAAGAAGCGCAAGAAGAAGGTCTACACCACCCCCAAGAAGATCAAGCA
CAAGCACAAGAAGACCAAGCTTGCCGTCCTCAAGTACTACAAGGTCGACG
GTGATGGCAAGATTGAGCGTCTTCGCCGCGAGTGCCCCTCCCCCGAGGTA
TGTTTAATTCCGCCTTTGGTTGATCCCTGAAGTTGGCGCAGTTTACTGAT
TTCGTCTCTTAGTGCGGTGCTGGTATCTTCATGGCCGCTATGCACAACCG
CCAGTACTGCGGAAAGTGCCACCTCACCTACGTCTTCGACGAGTCCAAAT
AA
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Coding sequence (CDS) from alignment at NKJJ01000020.1:1993206..1993807-

>CAN33_53210-T1 ID=CAN33_53210-T1|Name=CAN33_53210-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=1395bp|location=Sequence derived from alignment at NKJJ01000020.1:1993206..1993807- (Aspergillus niger FDAARGOS_311)
TGCGGTGCTGGTATCTTCATGGCCGCTATGCACAACCGCCAGTACTGCGG
AAAGTGCCACCTCACCTACGTCTTCGACGAGTCCAAATAAACAAGGAGGG
TATCCCCCCGGACCAGCAGCGTCTGATCTTCGCTGGTAAGCAGCTCGAGG
ACGGCCGTACTCTTTCGGACTACAACATCCAGAAGGAGTCCACCCTCCAC
TTGGTGCTCCGCCTGCGTGGTGGTGGTAAGAAGCGCAAGAAGAAGGTCTA
CACCACCCCCAAGAAGATCAAGCACAAGCACAAGAAGACCAAGCTTGCCG
TCCTCAAGTACTACAAGGTCGACGGTGATGGCAAGATTGAGCGTCTTCGC
CGCGAGTGCCCCTCCCCCGAGATGCAGATCTTCGTCAAGACCCTTACGGG
TAAGACTATCACCCTCGAGGTGGAGTCCTCGGACACCATTGACAATGTCA
AGTCCAAGATCCAGGTGCGGTGCTGGTATCTTCATGGCCGCTATGCACAA
CCGCCAGTACTGCGGAAAGTGCCACCTCACCTACGTCTTCGACGAGTCCA
AATAAACAAGGAGGGTATCCCCCCGGACCAGCAGCGTCTGATCTTCGCTG
GTAAGCAGCTCGAGGACGGCCGTACTCTTTCGGACTACAACATCCAGAAG
GAGTCCACCCTCCACTTGGTGCTCCGCCTGCGTGGTGGTGGTAAGAAGCG
CAAGAAGAAGGTCTACACCACCCCCAAGAAGATCAAGCACAAGCACAAGA
AGACCAAGCTTGCCGTCCTCAAGTACTACAAGGTCGACGGTGATGGCAAG
ATTGAGCGTCTTCGCCGCGAGTGCCCCTCCCCCGAGATGCAGATCTTCGT
CAAGACCCTTACGGGTAAGACTATCACCCTCGAGGTGGAGTCCTCGGACA
CCATTGACAATGTCAAGTCCAAGATCCAGGTGCGGTGCTGGTATCTTCAT
GGCCGCTATGCACAACCGCCAGTACTGCGGAAAGTGCCACCTCACCTACG
TCTTCGACGAGTCCAAATAAACAAGGAGGGTATCCCCCCGGACCAGCAGC
GTCTGATCTTCGCTGGTAAGCAGCTCGAGGACGGCCGTACTCTTTCGGAC
TACAACATCCAGAAGGAGTCCACCCTCCACTTGGTGCTCCGCCTGCGTGG
TGGTGGTAAGAAGCGCAAGAAGAAGGTCTACACCACCCCCAAGAAGATCA
AGCACAAGCACAAGAAGACCAAGCTTGCCGTCCTCAAGTACTACAAGGTC
GACGGTGATGGCAAGATTGAGCGTCTTCGCCGCGAGTGCCCCTCCCCCGA
GATGCAGATCTTCGTCAAGACCCTTACGGGTAAGACTATCACCCTCGAGG
TGGAGTCCTCGGACACCATTGACAATGTCAAGTCCAAGATCCAGG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0005515protein binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
UBI::CRP6CAN33_53210Aspergillus niger FDAARGOS_311gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CAN33_53210-T1CAN33_53210-T1-proteinAspergillus niger FDAARGOS_311polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_53210-T1.cdsCAN33_53210-T1.cdsAspergillus niger FDAARGOS_311CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_53210-T1.exon3CAN33_53210-T1.exon3Aspergillus niger FDAARGOS_311exon
CAN33_53210-T1.exon2CAN33_53210-T1.exon2Aspergillus niger FDAARGOS_311exon
CAN33_53210-T1.exon1CAN33_53210-T1.exon1Aspergillus niger FDAARGOS_311exon


Properties
Property NameValue
DBxrefInterPro:IPR029071
DBxrefInterPro:IPR011332
DBxrefInterPro:IPR019954
DBxrefInterPro:IPR038582
DBxrefInterPro:IPR002906
DBxrefInterPro:IPR000626
DBxrefInterPro:IPR019956
DBxrefPFAM:PF14560
DBxrefPFAM:PF00240
DBxrefPFAM:PF01599
DBxrefPFAM:PF11976
ProductUbiquitin-40S ribosomal protein S27a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger FDAARGOS_311 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NKJJ01000020.1supercontigNKJJ01000020.1:1993206..1993807 -
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