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CAN33_53760-T1, CAN33_53760-T1 (mRNA) Aspergillus niger FDAARGOS_311

Overview
NameCAN33_53760-T1
Unique NameCAN33_53760-T1
TypemRNA
OrganismAspergillus niger FDAARGOS_311
Sequences
The following sequences are available for this feature:

mRNA from alignment at NKJJ01000020.1:2379436..2380731+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>CAN33_53760-T1 ID=CAN33_53760-T1|Name=CAN33_53760-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=1296bp|location=Sequence derived from alignment at NKJJ01000020.1:2379436..2380731+ (Aspergillus niger FDAARGOS_311)
ATGGCGCCTCTCGTTCCCTCGCAGGAGGAGCTTGATCGCAGAAGGGTATG
TTCCCTCTTCCGACCGTGGCTTCTTCTCTCTCTCTTACGTCCTTCATCAT
ACTGACTGCATTGACTTCCAGATCGTCGACATCAACCCAGAGACCGTCTC
CAACATCCCCTCCACAGATTTTCCTGGTCACTGGCCCGGCGAGTCGCACG
AATGGTCCCTCGCAAAGTTCAAGAATGTACGTTGGTAGTACTCAAGTGTC
CGCGCTCAATTGCCCCTCCTCCCAGTCAAGCTTCATCAGCTTTACGCTCA
CACATCTTTTTTTTTCGCGAACAGGATCTCAAGATCGACTTCCACCGCAA
CGAGCGATTCGAATCCTCCTTCTCTCTCATCGGAGTCGACGCCTCCATTG
CCAATGCCTTCCGTCGCATTCTCATGGCTGAGGTGCCCAGCATCGCCATC
GAATACGTCTTCGTCCACAACAACACCTCTGTCATTCAGGATGAGGTTCT
CGCACAACGTCTGGGTCTGATTCCCCTCAAGGGTTCCGTGGAGGGCATCA
ACTGGATGCGCTGGTTCAAGAAGCCTACCGACGACGATCCCAATGGCAGC
AGTCCCGCCGATTACAACACCATCGTCTTGCGCTTGGACGTCGAATGTAC
CAAGAACCCCAACGCGGATCCCGAGGAGACTGACCCCCGCAAACTCTACA
AGAATGCGCACGTCTACGCCAAAGATATCACATTCCACCCCGTCGGTCGC
CAGGAACAGTTCTTTGCTGGCGATGACGCAATTCAGCCCGTCAACCCGGA
CATCCTGGTCGCCAAGCTTCGTCCCGGTCAGGCGATTGAAATGGAACTTC
ACTGTATCAAGGGTATCGGTGCCGACCATGCCAAGTTCTCCCCTGTCGCC
ACGGCCACCTACCGTCTACTACCCGACATCAAGATCCTCCGCCCCATCAT
CGGTGATGATGCCAAGAAGTTTGCCAAGTGCTTCCCCAGCGGTGTCATTG
GCCTCGAGAAGGTCACTCGTGAGGAGGCCAAGCAGAAGGACAGCGGATAT
GAGGGCCACGAGGGCGAATTGAAGGCAGTTGTTGTGGATCCCTTCAAGGA
TACCGTCAGCAGAGAGTGTCTGAGACACGAGGAGTTCCAGGGCAAGGTCA
AGCTCGGTCGCGTCCGCGACCACTTCATCTTCAACATCGAGAGTGTTGGC
CAATTCGAAAGCGACACCCTCTTCCTGGAGAGCGTCAAGGTGCTGAAGCT
GAAATGCGCAAGATGGAAGCGCGGCTTGACGGACCTTATGCGCTAA
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Coding sequence (CDS) from alignment at NKJJ01000020.1:2379436..2380731+

>CAN33_53760-T1 ID=CAN33_53760-T1|Name=CAN33_53760-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=3366bp|location=Sequence derived from alignment at NKJJ01000020.1:2379436..2380731+ (Aspergillus niger FDAARGOS_311)
ATGGCGCCTCTCGTTCCCTCGCAGGAGGAGCTTGATCGCAGAAGGATCGT
CGACATCAACCCAGAGACCGTCTCCAACATCCCCTCCACAGATTTTCCTG
GTCACTGGCCCGGCGAGTCGCACGAATGGTCCCTCGCAAAGTTCAAGAAT
GATCTCAAGATCGACTTCCACCGCAACGAGCGATTCGAATCCTCCTTCTC
TCTCATCGGAGTCGACGCCTCCATTGCCAATGCCTTCCGTCGCATTCTCA
TGGCTGAGGTGCCCAGCATCGCCATCGAATACGTCTTCGTCCACAACAAC
ACCTCTGTCATTCAGGATGAGGTTCTCGCACAACGTCTGGGTCTGATTCC
CCTCAAGGGTTCCGTGGAGGGCATCAACTGGATGCGCTGGTTCAAGAAGC
CTACCGACGACGATCCCAATGGCAGCAGTCCCGCCGATTACAACACCATC
GTCTTGCGCTTGGACGTCGAATGTACCAAGAACCCCAACGCGGATCCCGA
GGAGACTGACCCCCGCAAACTCTACAAGAATGCGCACGTCTACGCCAAAG
ATATCACATTCCACCCCGTCGGTCGCCAGGAACAGTTCTTTGCTGGCGAT
GACGCAATTCAGCCCGTCAACCCGGACATCCTGGTCGCCAAGCTTCGTCC
CGGTCAGGCGATTGAAATGGAACTTCACTGTATCAAGGGTATCGGTGCCG
ACCATGCCAAGTTCTCCCCTGTCGCCACGGCCACCTACCGTCTACTACCC
GACATCAAGATCCTCCGCCCCATCATCGGTGATGATGCCAAGAAGTTTGC
CAAGTGCTTCCCCAGCGGTGTCATTGGCCTCGAGAAGGTCACTCGTGAGG
AGGCCAAGCAGAAGGACAGCGGATATGAGGGCCACGAGGGCGAATTGAAG
GCAGTTGTTGTGGATCCCTTCAAGGATACCGTCAGCAGAGAGTGTCTGAG
ACACGAGGAGTTCCAGGGCAAGGTCAAGCTCGGTCGCGTCCGCGACCACT
TCATCTTCAACATCGAGAGTGTTGGCCAATTCGAAAGCGACACCCTCTTC
CTGGAGAGCGTCAAGGTGCTGAAGCTGAAATGCGCAAGATGGAAGCGCGG
CTTGACGGACCTTATGCGCTAAATGGCGCCTCTCGTTCCCTCGCAGGAGG
AGCTTGATCGCAGAAGGATCGTCGACATCAACCCAGAGACCGTCTCCAAC
ATCCCCTCCACAGATTTTCCTGGTCACTGGCCCGGCGAGTCGCACGAATG
GTCCCTCGCAAAGTTCAAGAATGATCTCAAGATCGACTTCCACCGCAACG
AGCGATTCGAATCCTCCTTCTCTCTCATCGGAGTCGACGCCTCCATTGCC
AATGCCTTCCGTCGCATTCTCATGGCTGAGGTGCCCAGCATCGCCATCGA
ATACGTCTTCGTCCACAACAACACCTCTGTCATTCAGGATGAGGTTCTCG
CACAACGTCTGGGTCTGATTCCCCTCAAGGGTTCCGTGGAGGGCATCAAC
TGGATGCGCTGGTTCAAGAAGCCTACCGACGACGATCCCAATGGCAGCAG
TCCCGCCGATTACAACACCATCGTCTTGCGCTTGGACGTCGAATGTACCA
AGAACCCCAACGCGGATCCCGAGGAGACTGACCCCCGCAAACTCTACAAG
AATGCGCACGTCTACGCCAAAGATATCACATTCCACCCCGTCGGTCGCCA
GGAACAGTTCTTTGCTGGCGATGACGCAATTCAGCCCGTCAACCCGGACA
TCCTGGTCGCCAAGCTTCGTCCCGGTCAGGCGATTGAAATGGAACTTCAC
TGTATCAAGGGTATCGGTGCCGACCATGCCAAGTTCTCCCCTGTCGCCAC
GGCCACCTACCGTCTACTACCCGACATCAAGATCCTCCGCCCCATCATCG
GTGATGATGCCAAGAAGTTTGCCAAGTGCTTCCCCAGCGGTGTCATTGGC
CTCGAGAAGGTCACTCGTGAGGAGGCCAAGCAGAAGGACAGCGGATATGA
GGGCCACGAGGGCGAATTGAAGGCAGTTGTTGTGGATCCCTTCAAGGATA
CCGTCAGCAGAGAGTGTCTGAGACACGAGGAGTTCCAGGGCAAGGTCAAG
CTCGGTCGCGTCCGCGACCACTTCATCTTCAACATCGAGAGTGTTGGCCA
ATTCGAAAGCGACACCCTCTTCCTGGAGAGCGTCAAGGTGCTGAAGCTGA
AATGCGCAAGATGGAAGCGCGGCTTGACGGACCTTATGCGCTAAATGGCG
CCTCTCGTTCCCTCGCAGGAGGAGCTTGATCGCAGAAGGATCGTCGACAT
CAACCCAGAGACCGTCTCCAACATCCCCTCCACAGATTTTCCTGGTCACT
GGCCCGGCGAGTCGCACGAATGGTCCCTCGCAAAGTTCAAGAATGATCTC
AAGATCGACTTCCACCGCAACGAGCGATTCGAATCCTCCTTCTCTCTCAT
CGGAGTCGACGCCTCCATTGCCAATGCCTTCCGTCGCATTCTCATGGCTG
AGGTGCCCAGCATCGCCATCGAATACGTCTTCGTCCACAACAACACCTCT
GTCATTCAGGATGAGGTTCTCGCACAACGTCTGGGTCTGATTCCCCTCAA
GGGTTCCGTGGAGGGCATCAACTGGATGCGCTGGTTCAAGAAGCCTACCG
ACGACGATCCCAATGGCAGCAGTCCCGCCGATTACAACACCATCGTCTTG
CGCTTGGACGTCGAATGTACCAAGAACCCCAACGCGGATCCCGAGGAGAC
TGACCCCCGCAAACTCTACAAGAATGCGCACGTCTACGCCAAAGATATCA
CATTCCACCCCGTCGGTCGCCAGGAACAGTTCTTTGCTGGCGATGACGCA
ATTCAGCCCGTCAACCCGGACATCCTGGTCGCCAAGCTTCGTCCCGGTCA
GGCGATTGAAATGGAACTTCACTGTATCAAGGGTATCGGTGCCGACCATG
CCAAGTTCTCCCCTGTCGCCACGGCCACCTACCGTCTACTACCCGACATC
AAGATCCTCCGCCCCATCATCGGTGATGATGCCAAGAAGTTTGCCAAGTG
CTTCCCCAGCGGTGTCATTGGCCTCGAGAAGGTCACTCGTGAGGAGGCCA
AGCAGAAGGACAGCGGATATGAGGGCCACGAGGGCGAATTGAAGGCAGTT
GTTGTGGATCCCTTCAAGGATACCGTCAGCAGAGAGTGTCTGAGACACGA
GGAGTTCCAGGGCAAGGTCAAGCTCGGTCGCGTCCGCGACCACTTCATCT
TCAACATCGAGAGTGTTGGCCAATTCGAAAGCGACACCCTCTTCCTGGAG
AGCGTCAAGGTGCTGAAGCTGAAATGCGCAAGATGGAAGCGCGGCTTGAC
GGACCTTATGCGCTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0046983protein dimerization activity
GO:0003899DNA-directed 5'-3' RNA polymerase activity
Vocabulary: Biological Process
TermDefinition
GO:0006351transcription, DNA-templated
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CAN33_53760CAN33_53760Aspergillus niger FDAARGOS_311gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_53760-T1.exon1CAN33_53760-T1.exon1Aspergillus niger FDAARGOS_311exon
CAN33_53760-T1.exon2CAN33_53760-T1.exon2Aspergillus niger FDAARGOS_311exon
CAN33_53760-T1.exon3CAN33_53760-T1.exon3Aspergillus niger FDAARGOS_311exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_53760-T1.cdsCAN33_53760-T1.cdsAspergillus niger FDAARGOS_311CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CAN33_53760-T1CAN33_53760-T1-proteinAspergillus niger FDAARGOS_311polypeptide


Properties
Property NameValue
NoteBUSCO:EOG09263CLY
DBxrefInterPro:IPR036603
DBxrefInterPro:IPR033901
DBxrefInterPro:IPR001514
DBxrefInterPro:IPR036643
DBxrefInterPro:IPR011262
DBxrefInterPro:IPR011263
DBxrefPFAM:PF01193
DBxrefPFAM:PF01000
ProductRNA polymerase Rpb3/RpoA insert domain family protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger FDAARGOS_311 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NKJJ01000020.1supercontigNKJJ01000020.1:2379436..2380731 +
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