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CAN33_53820-T1, CAN33_53820-T1 (mRNA) Aspergillus niger FDAARGOS_311

Overview
NameCAN33_53820-T1
Unique NameCAN33_53820-T1
TypemRNA
OrganismAspergillus niger FDAARGOS_311
Sequences
The following sequences are available for this feature:

mRNA from alignment at NKJJ01000020.1:2444487..2445043+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>CAN33_53820-T1 ID=CAN33_53820-T1|Name=CAN33_53820-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=557bp|location=Sequence derived from alignment at NKJJ01000020.1:2444487..2445043+ (Aspergillus niger FDAARGOS_311)
ATGACTGGACGTAAGTATTTTATCCCCTTTACTTGCTTCGACTACGAGTT
TCCTCCTCGTTCCCTACTCTCGGGTCGGATGGTGGTGATGATCTTGGATG
ATCTTGATGATGCACCCCTGGCGACACGTGACCGCGTACCTGTCACGCCC
ACGCGTCGTGTCCGAGATTTCATCTGATCTTCACCCCACCCTCACATACT
CTCATTGCTTGATGAAACAAAATATCACTCAACATATACTAACATTCTCT
TACAGGCGGAAAAGGAGGCAAGGGTCTCGGCAAGGGTGGCGCCAAGCGTC
ACCGTAAGATCTTGCGTGACAACATCCAGGGTATCACCAAGCCCGCTATC
CGCCGTCTCGCTCGCCGTGGTGGTGTCAAGCGTATCTCCGCCATGATCTA
CGAAGAGACTCGTGGTGTTCTCAAGTCCTTCCTCGAGTCCGTCATCCGTG
ATGCCGTCACCTACACTGAGCACGCCAAGCGCAAGACCGTCACCTCCCTC
GACGTTGTCTACGCCCTCAAGCGCCAGGGCCGTACCCTGTACGGTTTCGG
TGGTTAA
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Coding sequence (CDS) from alignment at NKJJ01000020.1:2444487..2445043+

>CAN33_53820-T1 ID=CAN33_53820-T1|Name=CAN33_53820-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=624bp|location=Sequence derived from alignment at NKJJ01000020.1:2444487..2445043+ (Aspergillus niger FDAARGOS_311)
ATGACTGGACGCGGAAAAGGAGGCAAGGGTCTCGGCAAGGGTGGCGCCAA
GCGTCACCGTAAGATCTTGCGTGACAACATCCAGGGTATCACCAAGCCCG
CTATCCGCCGTCTCGCTCGCCGTGGTGGTGTCAAGCGTATCTCCGCCATG
ATCTACGAAGAGACTCGTGGTGTTCTCAAGTCCTTCCTCGAGTCCGTCAT
CCGTGATGCCGTCACCTACACTGAGCACGCCAAGCGCAAGACCGTCACCT
CCCTCGACGTTGTCTACGCCCTCAAGCGCCAGGGCCGTACCCTGTACGGT
TTCGGTGGTTAAATGACTGGACGCGGAAAAGGAGGCAAGGGTCTCGGCAA
GGGTGGCGCCAAGCGTCACCGTAAGATCTTGCGTGACAACATCCAGGGTA
TCACCAAGCCCGCTATCCGCCGTCTCGCTCGCCGTGGTGGTGTCAAGCGT
ATCTCCGCCATGATCTACGAAGAGACTCGTGGTGTTCTCAAGTCCTTCCT
CGAGTCCGTCATCCGTGATGCCGTCACCTACACTGAGCACGCCAAGCGCA
AGACCGTCACCTCCCTCGACGTTGTCTACGCCCTCAAGCGCCAGGGCCGT
ACCCTGTACGGTTTCGGTGGTTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0000786nucleosome
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0046982protein heterodimerization activity
GO:0003677DNA binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CAN33_53820CAN33_53820Aspergillus niger FDAARGOS_311gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_53820-T1.exon1CAN33_53820-T1.exon1Aspergillus niger FDAARGOS_311exon
CAN33_53820-T1.exon2CAN33_53820-T1.exon2Aspergillus niger FDAARGOS_311exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_53820-T1.cdsCAN33_53820-T1.cdsAspergillus niger FDAARGOS_311CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CAN33_53820-T1CAN33_53820-T1-proteinAspergillus niger FDAARGOS_311polypeptide


Properties
Property NameValue
DBxrefInterPro:IPR019809
DBxrefInterPro:IPR009072
DBxrefInterPro:IPR035425
DBxrefInterPro:IPR001951
DBxrefPFAM:PF02969
DBxrefPFAM:PF15511
DBxrefPFAM:PF00808
ProductCore histone H2A/H2B/H3/H4 family protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger FDAARGOS_311 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NKJJ01000020.1supercontigNKJJ01000020.1:2444487..2445043 +
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