You are here

Home

CAN33_53945-T1, CAN33_53945-T1 (mRNA) Aspergillus niger FDAARGOS_311

Overview
NameCAN33_53945-T1
Unique NameCAN33_53945-T1
TypemRNA
OrganismAspergillus niger FDAARGOS_311
Sequences
The following sequences are available for this feature:

mRNA from alignment at NKJJ01000020.1:2517566..2518799-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>CAN33_53945-T1 ID=CAN33_53945-T1|Name=CAN33_53945-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=1234bp|location=Sequence derived from alignment at NKJJ01000020.1:2517566..2518799- (Aspergillus niger FDAARGOS_311)
ATGCATTTCCTCCAGAACGCCGTTGTGGCCGCCACTATGGGCGCTGCGCT
GGCCGCCGCTGCTCCTCTCGAGAAGCGCTCCTGCACTTTCACCTCCGCCT
CTGCTGCCAAGTCCGGCAAGTCCTCTTGCTCCACCATCACCCTCGACAAC
ATCGCGGTCCCCGCTGGTGAGACTCTTGACTTGACTGGCCTCAAGAAGGG
TACCACCGTACGTCTTCTCTAGCTCCCATAGTACTCTTCCTACTCCGATT
GGACCAACTAACTCTCTTCCCTCACAGGTCATCTTCGAGGGTGAGACCAC
CTTCGGCTACAAGGAATGGAAGGGTCCCCTGATCTCCATGTCCGGTACCG
ACATCACCGTCAAGCAGGCCTCCGGTGCCAAGATCAACTGCGACGGTGCT
CGCTGGTGGGACGGCAAGGGTAGCAACGGTGGCAAGACCAAGCCCAAGTT
CTTCCAGGCCCACAAGCTCGACCAGTCCAGCATCACCGGCCTGAAGGTCT
ACAACACCCCTGTCCAGGGTTTCAGCATTCTGGCCGACCACCTGACCATC
ACCGATGTGACCATCGACAACTCCGCCGGTACCAGCAAGGGTCACAACAC
CGATGCCTTTGACATTGGCCAGAGTACCTACATCACCATTGACGGTGCCA
CCGTCTACAACCAGGATGACTGCCTGGCCATCAACTCGGGTGAGGTATGT
ATATGTCTTGCCCCATCGCGCTGCCACTGTCCCGTAGCCACACGTGATTA
GAGACTGACTAGAACACAGCACATCACCTTCACCAACGGCTACTGTGATG
GTGGCCACGGTCTCTCCATCGGTTCCATCGGTGGCCGCAGTGACAACACC
GTCAACGACGTGACCATCTCCAACTCCAAGGTGCTCAACTCCCAGAACGG
TGTCCGCATCAAGACCATCTACGGCAAGACTGGCACTGTCGAGAACGTCA
AGTTTGAGGACATCACCCTGTCCGACATCAGCAAGTACGGTATTGTCGTT
GAGCAGGACTACGAGAACGGCAGCCCCACCGGCACGCCCACCAACGGTGT
CAAGGTTGAGGACATCACTTTCAAGAAGGTCACCGGCAGCGTCAAGAGCT
CTGGTACTGACATCTACATCCTGTGCGGTTCCGGCAGCTGCTCGAACTGG
ACCTGGAGCGGTGTTGATGTGACTGGCGGCAAGAAGAGCAGCAAGTGCAA
GAACGTCCCCTCGGGCGCTTCCTGCAGCGATTAA
back to top

Coding sequence (CDS) from alignment at NKJJ01000020.1:2517566..2518799-

>CAN33_53945-T1 ID=CAN33_53945-T1|Name=CAN33_53945-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=3267bp|location=Sequence derived from alignment at NKJJ01000020.1:2517566..2518799- (Aspergillus niger FDAARGOS_311)
CACATCACCTTCACCAACGGCTACTGTGATGGTGGCCACGGTCTCTCCAT
CGGTTCCATCGGTGGCCGCAGTGACAACACCGTCAACGACGTGACCATCT
CCAACTCCAAGGTGCTCAACTCCCAGAACGGTGTCCGCATCAAGACCATC
TACGGCAAGACTGGCACTGTCGAGAACGTCAAGTTTGAGGACATCACCCT
GTCCGACATCAGCAAGTACGGTATTGTCGTTGAGCAGGACTACGAGAACG
GCAGCCCCACCGGCACGCCCACCAACGGTGTCAAGGTTGAGGACATCACT
TTCAAGAAGGTCACCGGCAGCGTCAAGAGCTCTGGTACTGACATCTACAT
CCTGTGCGGTTCCGGCAGCTGCTCGAACTGGACCTGGAGCGGTGTTGATG
TGACTGGCGGCAAGAAGAGCAGCAAGTGCAAGAACGTCCCCTCGGGCGCT
TCCTGCAGCGATTAAGTCATCTTCGAGGGTGAGACCACCTTCGGCTACAA
GGAATGGAAGGGTCCCCTGATCTCCATGTCCGGTACCGACATCACCGTCA
AGCAGGCCTCCGGTGCCAAGATCAACTGCGACGGTGCTCGCTGGTGGGAC
GGCAAGGGTAGCAACGGTGGCAAGACCAAGCCCAAGTTCTTCCAGGCCCA
CAAGCTCGACCAGTCCAGCATCACCGGCCTGAAGGTCTACAACACCCCTG
TCCAGGGTTTCAGCATTCTGGCCGACCACCTGACCATCACCGATGTGACC
ATCGACAACTCCGCCGGTACCAGCAAGGGTCACAACACCGATGCCTTTGA
CATTGGCCAGAGTACCTACATCACCATTGACGGTGCCACCGTCTACAACC
AGGATGACTGCCTGGCCATCAACTCGGGTGAGATGCATTTCCTCCAGAAC
GCCGTTGTGGCCGCCACTATGGGCGCTGCGCTGGCCGCCGCTGCTCCTCT
CGAGAAGCGCTCCTGCACTTTCACCTCCGCCTCTGCTGCCAAGTCCGGCA
AGTCCTCTTGCTCCACCATCACCCTCGACAACATCGCGGTCCCCGCTGGT
GAGACTCTTGACTTGACTGGCCTCAAGAAGGGTACCACCCACATCACCTT
CACCAACGGCTACTGTGATGGTGGCCACGGTCTCTCCATCGGTTCCATCG
GTGGCCGCAGTGACAACACCGTCAACGACGTGACCATCTCCAACTCCAAG
GTGCTCAACTCCCAGAACGGTGTCCGCATCAAGACCATCTACGGCAAGAC
TGGCACTGTCGAGAACGTCAAGTTTGAGGACATCACCCTGTCCGACATCA
GCAAGTACGGTATTGTCGTTGAGCAGGACTACGAGAACGGCAGCCCCACC
GGCACGCCCACCAACGGTGTCAAGGTTGAGGACATCACTTTCAAGAAGGT
CACCGGCAGCGTCAAGAGCTCTGGTACTGACATCTACATCCTGTGCGGTT
CCGGCAGCTGCTCGAACTGGACCTGGAGCGGTGTTGATGTGACTGGCGGC
AAGAAGAGCAGCAAGTGCAAGAACGTCCCCTCGGGCGCTTCCTGCAGCGA
TTAAGTCATCTTCGAGGGTGAGACCACCTTCGGCTACAAGGAATGGAAGG
GTCCCCTGATCTCCATGTCCGGTACCGACATCACCGTCAAGCAGGCCTCC
GGTGCCAAGATCAACTGCGACGGTGCTCGCTGGTGGGACGGCAAGGGTAG
CAACGGTGGCAAGACCAAGCCCAAGTTCTTCCAGGCCCACAAGCTCGACC
AGTCCAGCATCACCGGCCTGAAGGTCTACAACACCCCTGTCCAGGGTTTC
AGCATTCTGGCCGACCACCTGACCATCACCGATGTGACCATCGACAACTC
CGCCGGTACCAGCAAGGGTCACAACACCGATGCCTTTGACATTGGCCAGA
GTACCTACATCACCATTGACGGTGCCACCGTCTACAACCAGGATGACTGC
CTGGCCATCAACTCGGGTGAGATGCATTTCCTCCAGAACGCCGTTGTGGC
CGCCACTATGGGCGCTGCGCTGGCCGCCGCTGCTCCTCTCGAGAAGCGCT
CCTGCACTTTCACCTCCGCCTCTGCTGCCAAGTCCGGCAAGTCCTCTTGC
TCCACCATCACCCTCGACAACATCGCGGTCCCCGCTGGTGAGACTCTTGA
CTTGACTGGCCTCAAGAAGGGTACCACCCACATCACCTTCACCAACGGCT
ACTGTGATGGTGGCCACGGTCTCTCCATCGGTTCCATCGGTGGCCGCAGT
GACAACACCGTCAACGACGTGACCATCTCCAACTCCAAGGTGCTCAACTC
CCAGAACGGTGTCCGCATCAAGACCATCTACGGCAAGACTGGCACTGTCG
AGAACGTCAAGTTTGAGGACATCACCCTGTCCGACATCAGCAAGTACGGT
ATTGTCGTTGAGCAGGACTACGAGAACGGCAGCCCCACCGGCACGCCCAC
CAACGGTGTCAAGGTTGAGGACATCACTTTCAAGAAGGTCACCGGCAGCG
TCAAGAGCTCTGGTACTGACATCTACATCCTGTGCGGTTCCGGCAGCTGC
TCGAACTGGACCTGGAGCGGTGTTGATGTGACTGGCGGCAAGAAGAGCAG
CAAGTGCAAGAACGTCCCCTCGGGCGCTTCCTGCAGCGATTAAGTCATCT
TCGAGGGTGAGACCACCTTCGGCTACAAGGAATGGAAGGGTCCCCTGATC
TCCATGTCCGGTACCGACATCACCGTCAAGCAGGCCTCCGGTGCCAAGAT
CAACTGCGACGGTGCTCGCTGGTGGGACGGCAAGGGTAGCAACGGTGGCA
AGACCAAGCCCAAGTTCTTCCAGGCCCACAAGCTCGACCAGTCCAGCATC
ACCGGCCTGAAGGTCTACAACACCCCTGTCCAGGGTTTCAGCATTCTGGC
CGACCACCTGACCATCACCGATGTGACCATCGACAACTCCGCCGGTACCA
GCAAGGGTCACAACACCGATGCCTTTGACATTGGCCAGAGTACCTACATC
ACCATTGACGGTGCCACCGTCTACAACCAGGATGACTGCCTGGCCATCAA
CTCGGGTGAGATGCATTTCCTCCAGAACGCCGTTGTGGCCGCCACTATGG
GCGCTGCGCTGGCCGCCGCTGCTCCTCTCGAGAAGCGCTCCTGCACTTTC
ACCTCCGCCTCTGCTGCCAAGTCCGGCAAGTCCTCTTGCTCCACCATCAC
CCTCGACAACATCGCGGTCCCCGCTGGTGAGACTCTTGACTTGACTGGCC
TCAAGAAGGGTACCACC
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0004650polygalacturonase activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CAN33_53945CAN33_53945Aspergillus niger FDAARGOS_311gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CAN33_53945-T1CAN33_53945-T1-proteinAspergillus niger FDAARGOS_311polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_53945-T1.cdsCAN33_53945-T1.cdsAspergillus niger FDAARGOS_311CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_53945-T1.exon3CAN33_53945-T1.exon3Aspergillus niger FDAARGOS_311exon
CAN33_53945-T1.exon2CAN33_53945-T1.exon2Aspergillus niger FDAARGOS_311exon
CAN33_53945-T1.exon1CAN33_53945-T1.exon1Aspergillus niger FDAARGOS_311exon


Properties
Property NameValue
NoteSECRETED:SignalP(1-18)
NoteCAZy:GH28
DBxrefInterPro:IPR011050
DBxrefInterPro:IPR012334
DBxrefInterPro:IPR000743
DBxrefInterPro:IPR006626
DBxrefPFAM:PF00295
ProductGlycosyl hydrolases family 28 family protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger FDAARGOS_311 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NKJJ01000020.1supercontigNKJJ01000020.1:2517566..2518799 -
Powered by Drupal