You are here

Home

CAN33_6225-T1, CAN33_6225-T1 (mRNA) Aspergillus niger FDAARGOS_311

Overview
NameCAN33_6225-T1
Unique NameCAN33_6225-T1
TypemRNA
OrganismAspergillus niger FDAARGOS_311
Sequences
The following sequences are available for this feature:

mRNA from alignment at NKJJ01000019.1:1553490..1554314+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>CAN33_6225-T1 ID=CAN33_6225-T1|Name=CAN33_6225-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=825bp|location=Sequence derived from alignment at NKJJ01000019.1:1553490..1554314+ (Aspergillus niger FDAARGOS_311)
ATGTCGAACCCGTTGGACACCGACGCCGGCTCGGAGCTCTTCAGCAGCTA
CGAGACCGAGCTAAAGCTGGTGCAAGCCGATCTGAATCAGAAGTTGGACC
AGATCGCCGAGTCAAGCGGTGAACAACGAAAGTCAGCAATTAGGCAAGCC
GAGAGAGCCCTGGATGAAGCCACGGAATTGGTATGTTGGACGCATTTGGC
GAGAAGCGCGCCCCGCGTCAATTTTCCACTAACAGGCGGGAATACAGCTA
GATCAAATGCGCATGGAGAAGCAGAACATCCCCTCAGCAGCACGATCGAA
GATCAACACGCGCGTTCGCAACTACGCTACCGATATCGACGAGGCCAAAC
GCAAGTTGAGGTCTCTTTCCGATGACCGCAAGGCGCTCTTCGGCGACCGC
TACACAGATGATCCGCAGGACGAACATCTGGAACAAAGGCAACAGCTCCT
GTCTGGTACGGAGCGGTTGGAGCGGAGTTCCGCCCGGCTCCAGGAGAGTC
AGCGCATCGCCCTCGAGACGGAGGATATTGGTCGCAACACCTTGGCCGAC
TTGAACCAGCAGCGCGAGACGATCATGAATGCGCGGGGTCGGCTGCTCGA
GAGCGAAGGATATGTAGACACCAGTATCAAGACACTAAGGGGCATGGCCC
GTAGGTACTGTCCCCCTAACACTCAAGGACATTTGCTTCGCTACTTGTCA
CAGCTGCTTGACTGCTCAAATGCTTACTGTATTCTAGGATGGCTACGAAT
CGGTTGATCACAATTGCAATCATCACTGTCTTGATCCTGTTGATTTTTGC
CGTTATCTACAGCAAGTTCCATTGA
back to top

Coding sequence (CDS) from alignment at NKJJ01000019.1:1553490..1554314+

>CAN33_6225-T1 ID=CAN33_6225-T1|Name=CAN33_6225-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=2025bp|location=Sequence derived from alignment at NKJJ01000019.1:1553490..1554314+ (Aspergillus niger FDAARGOS_311)
ATGTCGAACCCGTTGGACACCGACGCCGGCTCGGAGCTCTTCAGCAGCTA
CGAGACCGAGCTAAAGCTGGTGCAAGCCGATCTGAATCAGAAGTTGGACC
AGATCGCCGAGTCAAGCGGTGAACAACGAAAGTCAGCAATTAGGCAAGCC
GAGAGAGCCCTGGATGAAGCCACGGAATTGCTAGATCAAATGCGCATGGA
GAAGCAGAACATCCCCTCAGCAGCACGATCGAAGATCAACACGCGCGTTC
GCAACTACGCTACCGATATCGACGAGGCCAAACGCAAGTTGAGGTCTCTT
TCCGATGACCGCAAGGCGCTCTTCGGCGACCGCTACACAGATGATCCGCA
GGACGAACATCTGGAACAAAGGCAACAGCTCCTGTCTGGTACGGAGCGGT
TGGAGCGGAGTTCCGCCCGGCTCCAGGAGAGTCAGCGCATCGCCCTCGAG
ACGGAGGATATTGGTCGCAACACCTTGGCCGACTTGAACCAGCAGCGCGA
GACGATCATGAATGCGCGGGGTCGGCTGCTCGAGAGCGAAGGATATGTAG
ACACCAGTATCAAGACACTAAGGGGCATGGCCCGTAGGATGGCTACGAAT
CGGTTGATCACAATTGCAATCATCACTGTCTTGATCCTGTTGATTTTTGC
CGTTATCTACAGCAAGTTCCATTGAATGTCGAACCCGTTGGACACCGACG
CCGGCTCGGAGCTCTTCAGCAGCTACGAGACCGAGCTAAAGCTGGTGCAA
GCCGATCTGAATCAGAAGTTGGACCAGATCGCCGAGTCAAGCGGTGAACA
ACGAAAGTCAGCAATTAGGCAAGCCGAGAGAGCCCTGGATGAAGCCACGG
AATTGCTAGATCAAATGCGCATGGAGAAGCAGAACATCCCCTCAGCAGCA
CGATCGAAGATCAACACGCGCGTTCGCAACTACGCTACCGATATCGACGA
GGCCAAACGCAAGTTGAGGTCTCTTTCCGATGACCGCAAGGCGCTCTTCG
GCGACCGCTACACAGATGATCCGCAGGACGAACATCTGGAACAAAGGCAA
CAGCTCCTGTCTGGTACGGAGCGGTTGGAGCGGAGTTCCGCCCGGCTCCA
GGAGAGTCAGCGCATCGCCCTCGAGACGGAGGATATTGGTCGCAACACCT
TGGCCGACTTGAACCAGCAGCGCGAGACGATCATGAATGCGCGGGGTCGG
CTGCTCGAGAGCGAAGGATATGTAGACACCAGTATCAAGACACTAAGGGG
CATGGCCCGTAGGATGGCTACGAATCGGTTGATCACAATTGCAATCATCA
CTGTCTTGATCCTGTTGATTTTTGCCGTTATCTACAGCAAGTTCCATTGA
ATGTCGAACCCGTTGGACACCGACGCCGGCTCGGAGCTCTTCAGCAGCTA
CGAGACCGAGCTAAAGCTGGTGCAAGCCGATCTGAATCAGAAGTTGGACC
AGATCGCCGAGTCAAGCGGTGAACAACGAAAGTCAGCAATTAGGCAAGCC
GAGAGAGCCCTGGATGAAGCCACGGAATTGCTAGATCAAATGCGCATGGA
GAAGCAGAACATCCCCTCAGCAGCACGATCGAAGATCAACACGCGCGTTC
GCAACTACGCTACCGATATCGACGAGGCCAAACGCAAGTTGAGGTCTCTT
TCCGATGACCGCAAGGCGCTCTTCGGCGACCGCTACACAGATGATCCGCA
GGACGAACATCTGGAACAAAGGCAACAGCTCCTGTCTGGTACGGAGCGGT
TGGAGCGGAGTTCCGCCCGGCTCCAGGAGAGTCAGCGCATCGCCCTCGAG
ACGGAGGATATTGGTCGCAACACCTTGGCCGACTTGAACCAGCAGCGCGA
GACGATCATGAATGCGCGGGGTCGGCTGCTCGAGAGCGAAGGATATGTAG
ACACCAGTATCAAGACACTAAGGGGCATGGCCCGTAGGATGGCTACGAAT
CGGTTGATCACAATTGCAATCATCACTGTCTTGATCCTGTTGATTTTTGC
CGTTATCTACAGCAAGTTCCATTGA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0016192vesicle-mediated transport
GO:0006886intracellular protein transport
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CAN33_6225CAN33_6225Aspergillus niger FDAARGOS_311gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_6225-T1.exon1CAN33_6225-T1.exon1Aspergillus niger FDAARGOS_311exon
CAN33_6225-T1.exon2CAN33_6225-T1.exon2Aspergillus niger FDAARGOS_311exon
CAN33_6225-T1.exon3CAN33_6225-T1.exon3Aspergillus niger FDAARGOS_311exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_6225-T1.cdsCAN33_6225-T1.cdsAspergillus niger FDAARGOS_311CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CAN33_6225-T1CAN33_6225-T1-proteinAspergillus niger FDAARGOS_311polypeptide


Properties
Property NameValue
NoteBUSCO:EOG09264R4M
DBxrefInterPro:IPR010989
DBxrefInterPro:IPR007705
DBxrefInterPro:IPR038407
DBxrefInterPro:IPR000727
DBxrefPFAM:PF12352
DBxrefPFAM:PF05008
ProductVesicle transport v-SNARE protein N-terminus family protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger FDAARGOS_311 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NKJJ01000019.1supercontigNKJJ01000019.1:1553490..1554314 +
Powered by Drupal