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CAN33_8725-T1, CAN33_8725-T1 (mRNA) Aspergillus niger FDAARGOS_311

Overview
NameCAN33_8725-T1
Unique NameCAN33_8725-T1
TypemRNA
OrganismAspergillus niger FDAARGOS_311
Sequences
The following sequences are available for this feature:

mRNA from alignment at NKJJ01000012.1:535440..536071+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>CAN33_8725-T1 ID=CAN33_8725-T1|Name=CAN33_8725-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=632bp|location=Sequence derived from alignment at NKJJ01000012.1:535440..536071+ (Aspergillus niger FDAARGOS_311)
ATGTCCTTCTACGTCGCCCCAAGCCAGCAGCGCACTCTGCGCGCCTGCAT
GGTGTGCTCCCTTGTCCAACTGCACAGCGTACGTTCAGCTGCTACCTCCC
AATTAAAACCAACCCAACCCAACCCGAACAACTAACATTTTCTCCTTCCT
TACTGCTTAGAAATTCATGCGCGAAGGCTGTCCCAACTGCGACAACGTCC
TCGGCCTCCGCGGCAACAACGACGCGATCCAAGAATGCACGTCGCAGGTC
TTCGAGGGCCTGGTGACGCTCCGCGATCCCACAACGAGCTGGGTGGCTAG
GTGGCAGAGATTGGATAGTTATGTGCCGGGGACGTATGCGGTTAAGGTTA
CGGGATCGGTGAGTACTCTCGCCCACCCATACTGAACTTCAATTATGTCC
GGGGGTGGTGGTGAAGAGAATATTGGGCTAACGGTGATGGGTGAACAGCT
TCCCGATGAGATTATTTCCAGTTTGGAGGATTCGGGTGTCAAGTATATTC
CGTATGTTGCCCTTCTATTCCTTCTTTGCATGTCTTTGCATTGTGTGTTG
CGTGTTGGATTAATTGATGAGTGCTGATTATTATGTGTCTCGATACAGGA
GGGATGGTAGCACGGGTGAAGAGGAGGCGTGA
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Coding sequence (CDS) from alignment at NKJJ01000012.1:535440..536071+

>CAN33_8725-T1 ID=CAN33_8725-T1|Name=CAN33_8725-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=1452bp|location=Sequence derived from alignment at NKJJ01000012.1:535440..536071+ (Aspergillus niger FDAARGOS_311)
ATGTCCTTCTACGTCGCCCCAAGCCAGCAGCGCACTCTGCGCGCCTGCAT
GGTGTGCTCCCTTGTCCAACTGCACAGCAAATTCATGCGCGAAGGCTGTC
CCAACTGCGACAACGTCCTCGGCCTCCGCGGCAACAACGACGCGATCCAA
GAATGCACGTCGCAGGTCTTCGAGGGCCTGGTGACGCTCCGCGATCCCAC
AACGAGCTGGGTGGCTAGGTGGCAGAGATTGGATAGTTATGTGCCGGGGA
CGTATGCGGTTAAGGTTACGGGATCGCTTCCCGATGAGATTATTTCCAGT
TTGGAGGATTCGGGTGTCAAGTATATTCCGAGGGATGGTAGCACGGGTGA
AGAGGAGGCGTGAATGTCCTTCTACGTCGCCCCAAGCCAGCAGCGCACTC
TGCGCGCCTGCATGGTGTGCTCCCTTGTCCAACTGCACAGCAAATTCATG
CGCGAAGGCTGTCCCAACTGCGACAACGTCCTCGGCCTCCGCGGCAACAA
CGACGCGATCCAAGAATGCACGTCGCAGGTCTTCGAGGGCCTGGTGACGC
TCCGCGATCCCACAACGAGCTGGGTGGCTAGGTGGCAGAGATTGGATAGT
TATGTGCCGGGGACGTATGCGGTTAAGGTTACGGGATCGCTTCCCGATGA
GATTATTTCCAGTTTGGAGGATTCGGGTGTCAAGTATATTCCGAGGGATG
GTAGCACGGGTGAAGAGGAGGCGTGAATGTCCTTCTACGTCGCCCCAAGC
CAGCAGCGCACTCTGCGCGCCTGCATGGTGTGCTCCCTTGTCCAACTGCA
CAGCAAATTCATGCGCGAAGGCTGTCCCAACTGCGACAACGTCCTCGGCC
TCCGCGGCAACAACGACGCGATCCAAGAATGCACGTCGCAGGTCTTCGAG
GGCCTGGTGACGCTCCGCGATCCCACAACGAGCTGGGTGGCTAGGTGGCA
GAGATTGGATAGTTATGTGCCGGGGACGTATGCGGTTAAGGTTACGGGAT
CGCTTCCCGATGAGATTATTTCCAGTTTGGAGGATTCGGGTGTCAAGTAT
ATTCCGAGGGATGGTAGCACGGGTGAAGAGGAGGCGTGAATGTCCTTCTA
CGTCGCCCCAAGCCAGCAGCGCACTCTGCGCGCCTGCATGGTGTGCTCCC
TTGTCCAACTGCACAGCAAATTCATGCGCGAAGGCTGTCCCAACTGCGAC
AACGTCCTCGGCCTCCGCGGCAACAACGACGCGATCCAAGAATGCACGTC
GCAGGTCTTCGAGGGCCTGGTGACGCTCCGCGATCCCACAACGAGCTGGG
TGGCTAGGTGGCAGAGATTGGATAGTTATGTGCCGGGGACGTATGCGGTT
AAGGTTACGGGATCGCTTCCCGATGAGATTATTTCCAGTTTGGAGGATTC
GGGTGTCAAGTATATTCCGAGGGATGGTAGCACGGGTGAAGAGGAGGCGT
GA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0032786positive regulation of DNA-templated transcription, elongation
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
SPT4CAN33_8725Aspergillus niger FDAARGOS_311gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_8725-T1.exon1CAN33_8725-T1.exon1Aspergillus niger FDAARGOS_311exon
CAN33_8725-T1.exon2CAN33_8725-T1.exon2Aspergillus niger FDAARGOS_311exon
CAN33_8725-T1.exon3CAN33_8725-T1.exon3Aspergillus niger FDAARGOS_311exon
CAN33_8725-T1.exon4CAN33_8725-T1.exon4Aspergillus niger FDAARGOS_311exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_8725-T1.cdsCAN33_8725-T1.cdsAspergillus niger FDAARGOS_311CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CAN33_8725-T1CAN33_8725-T1-proteinAspergillus niger FDAARGOS_311polypeptide


Properties
Property NameValue
NoteBUSCO:EOG09265BBJ
DBxrefInterPro:IPR029040
DBxrefInterPro:IPR009287
DBxrefInterPro:IPR038510
DBxrefInterPro:IPR022800
DBxrefPFAM:PF06093
Producttranscription elongation factor spt4
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger FDAARGOS_311 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NKJJ01000012.1supercontigNKJJ01000012.1:535440..536071 +
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