|
|
Sequences
The following sequences are available for this feature:
mRNA from alignment at ch1:237679..238855- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_000202-T1 ID=KJC3_000202-T1|Name=KJC3_000202-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1177bp|location=Sequence derived from alignment at ch1:237679..238855- (Aspergillus niger KJC3)
TCTAAATATACCACAACCAATCCACAACTTTAGTATACAACATGGGAGAC
TACAACAGTTCAGGCACCCTACCGCGCCATGTCGATCGAAAAGCCCTTTA
TACGGATCTTGAAGCTCGCGTTCGCTATCTACAGCAGTTTATTGGCTTCA
CTGCCGGTCAGTCGCCCCGTATCCTTGTTCCCGCTATCTTTCCGCGACCG
GGAAAGGCCGAGCATTGTCGCTAATACATTTTTCTAGATGATGTTATTGC
ACTAAACCGAGGATCCAAGTACATCAAAGCACTAGCTCCCACCCTTGTCG
ATCGCGTATACTCCAAGCTGCTGGAGGCTGATATCACAGCCCGCGTATTC
CAGACACGGAGCACAACATCGGAGCTGGATGTTGATGAGTATCCCGAGTT
CAAAAGCCCTTATATGCAATGCCGCCGAATGTTCCTCCGCTGGTATATCA
CTCGAATATGTTCTGATCCAACGAAGATTGAATTCTGGGCGTACCTCGAT
AAAGTCGGGTAATGTTGGACTGGGCCCGATAATCTGGATTTTTCCAACTG
ACAGCTGAGCTAGGCGTATGCACCGGGGCAAAGACCGCATGATCTCCTTT
GACGTGGAATATATACATATCGGCGCTTGTCTTGGCTACATTCAAGATGT
GCTCATCGAAGGAGTCATGGGGTGCGAGAAGATGTCCCTCCCCTTCCGAG
TTGCGCTGGTTCGAGCGCTGGGGAAAGTCATCTGGATCCAAAATGACCTG
TTTGCTCGGTGGCGAGTTAGGGACGGCGCTGAATTTGAGATGGAGATTGA
GGCAGTTCACGAAAATCAAGAACCGATATCGAGGGCAGCTAGTGCTAATG
CGAATACACGCAATCGCCGGGATGGGGAGGCAAGCAGCGTACGGAGTACC
TGGTCTTCCCGGGGAGATTCAGCCAGCATCTTCTCCGACCATCAATCTAC
TGCACCCACGTCAATTAACATTGGATCACAGGAAGTGGCCGCGGACTATC
CGGCTTGTCCATTTTCGCCAGACCATGCGCCGTCTTATGAAACAAGAGTG
TGGTCTGATGCAGATTCTGGCCGCTGCTCTCGGTGACCTGATGATCTCCA
TGGAGGCAAAAATGGCAGTTGGTGCCGACTACATAGCTTCTGTCTGTCCT
TGGGATGCTATTGGAACGACGTACCGC back to topCoding sequence (CDS) from alignment at ch1:237679..238855- >KJC3_000202-T1 ID=KJC3_000202-T1|Name=KJC3_000202-T1|organism=Aspergillus niger KJC3|type=CDS|length=2727bp|location=Sequence derived from alignment at ch1:237679..238855- (Aspergillus niger KJC3)
GCGTATGCACCGGGGCAAAGACCGCATGATCTCCTTTGACGTGGAATATA
TACATATCGGCGCTTGTCTTGGCTACATTCAAGATGTGCTCATCGAAGGA
GTCATGGGGTGCGAGAAGATGTCCCTCCCCTTCCGAGTTGCGCTGGTTCG
AGCGCTGGGGAAAGTCATCTGGATCCAAAATGACCTGTTTGCTCGGTGGC
GAGTTAGGGACGGCGCTGAATTTGAGATGGAGATTGAGGCAGTTCACGAA
AATCAAGAACCGATATCGAGGGCAGCTAGTGCTAATGCGAATACACGCAA
TCGCCGGGATGGGGAGGCAAGCAGCGTACGGAGTACCTGGTCTTCCCGGG
GAGATTCAGCCAGCATCTTCTCCGACCATCAATCTACTGCACCCACGTCA
ATTAACATTGGATCACAGGAAGTGGCCGCGGACTATCCGGCTTGTCCATT
TTCGCCAGACCATGCGCCGTCTTATGAAACAAGAGTGTGGTCTGATGCAG
ATTCTGGCCGCTGCTCTCGGTGAATGATGTTATTGCACTAAACCGAGGAT
CCAAGTACATCAAAGCACTAGCTCCCACCCTTGTCGATCGCGTATACTCC
AAGCTGCTGGAGGCTGATATCACAGCCCGCGTATTCCAGACACGGAGCAC
AACATCGGAGCTGGATGTTGATGAGTATCCCGAGTTCAAAAGCCCTTATA
TGCAATGCCGCCGAATGTTCCTCCGCTGGTATATCACTCGAATATGTTCT
GATCCAACGAAGATTGAATTCTGGGCGTACCTCGATAAAGTCGGATGGGA
GACTACAACAGTTCAGGCACCCTACCGCGCCATGTCGATCGAAAAGCCCT
TTATACGGATCTTGAAGCTCGCGTTCGCTATCTACAGCAGTTTATTGGCT
TCACTGCCGGCGTATGCACCGGGGCAAAGACCGCATGATCTCCTTTGACG
TGGAATATATACATATCGGCGCTTGTCTTGGCTACATTCAAGATGTGCTC
ATCGAAGGAGTCATGGGGTGCGAGAAGATGTCCCTCCCCTTCCGAGTTGC
GCTGGTTCGAGCGCTGGGGAAAGTCATCTGGATCCAAAATGACCTGTTTG
CTCGGTGGCGAGTTAGGGACGGCGCTGAATTTGAGATGGAGATTGAGGCA
GTTCACGAAAATCAAGAACCGATATCGAGGGCAGCTAGTGCTAATGCGAA
TACACGCAATCGCCGGGATGGGGAGGCAAGCAGCGTACGGAGTACCTGGT
CTTCCCGGGGAGATTCAGCCAGCATCTTCTCCGACCATCAATCTACTGCA
CCCACGTCAATTAACATTGGATCACAGGAAGTGGCCGCGGACTATCCGGC
TTGTCCATTTTCGCCAGACCATGCGCCGTCTTATGAAACAAGAGTGTGGT
CTGATGCAGATTCTGGCCGCTGCTCTCGGTGAATGATGTTATTGCACTAA
ACCGAGGATCCAAGTACATCAAAGCACTAGCTCCCACCCTTGTCGATCGC
GTATACTCCAAGCTGCTGGAGGCTGATATCACAGCCCGCGTATTCCAGAC
ACGGAGCACAACATCGGAGCTGGATGTTGATGAGTATCCCGAGTTCAAAA
GCCCTTATATGCAATGCCGCCGAATGTTCCTCCGCTGGTATATCACTCGA
ATATGTTCTGATCCAACGAAGATTGAATTCTGGGCGTACCTCGATAAAGT
CGGATGGGAGACTACAACAGTTCAGGCACCCTACCGCGCCATGTCGATCG
AAAAGCCCTTTATACGGATCTTGAAGCTCGCGTTCGCTATCTACAGCAGT
TTATTGGCTTCACTGCCGGCGTATGCACCGGGGCAAAGACCGCATGATCT
CCTTTGACGTGGAATATATACATATCGGCGCTTGTCTTGGCTACATTCAA
GATGTGCTCATCGAAGGAGTCATGGGGTGCGAGAAGATGTCCCTCCCCTT
CCGAGTTGCGCTGGTTCGAGCGCTGGGGAAAGTCATCTGGATCCAAAATG
ACCTGTTTGCTCGGTGGCGAGTTAGGGACGGCGCTGAATTTGAGATGGAG
ATTGAGGCAGTTCACGAAAATCAAGAACCGATATCGAGGGCAGCTAGTGC
TAATGCGAATACACGCAATCGCCGGGATGGGGAGGCAAGCAGCGTACGGA
GTACCTGGTCTTCCCGGGGAGATTCAGCCAGCATCTTCTCCGACCATCAA
TCTACTGCACCCACGTCAATTAACATTGGATCACAGGAAGTGGCCGCGGA
CTATCCGGCTTGTCCATTTTCGCCAGACCATGCGCCGTCTTATGAAACAA
GAGTGTGGTCTGATGCAGATTCTGGCCGCTGCTCTCGGTGAATGATGTTA
TTGCACTAAACCGAGGATCCAAGTACATCAAAGCACTAGCTCCCACCCTT
GTCGATCGCGTATACTCCAAGCTGCTGGAGGCTGATATCACAGCCCGCGT
ATTCCAGACACGGAGCACAACATCGGAGCTGGATGTTGATGAGTATCCCG
AGTTCAAAAGCCCTTATATGCAATGCCGCCGAATGTTCCTCCGCTGGTAT
ATCACTCGAATATGTTCTGATCCAACGAAGATTGAATTCTGGGCGTACCT
CGATAAAGTCGGATGGGAGACTACAACAGTTCAGGCACCCTACCGCGCCA
TGTCGATCGAAAAGCCCTTTATACGGATCTTGAAGCTCGCGTTCGCTATC
TACAGCAGTTTATTGGCTTCACTGCCG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0020037 | heme binding |
| GO:0019825 | oxygen binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_000202-T1.utr3p1 | KJC3_000202-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_000202-T1.utr5p1 | KJC3_000202-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR012292 |
| DBxref | PFAM:PF11563 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch1 | supercontig | ch1:237679..238855 - |
|
