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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch1:657279..661107+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_000364-T1 ID=KJC3_000364-T1|Name=KJC3_000364-T1|organism=Aspergillus niger KJC3|type=mRNA|length=3829bp|location=Sequence derived from alignment at ch1:657279..661107+ (Aspergillus niger KJC3)
ACAGCCACGCAGAGGGGGACAAATCCCATCCAGGATGAATATTCATGAAG
CTGATGAGCGCCCGTTGAAGAAGAGGCGCTTTTTCGTGGATGATGAAGAT
CTCGCCACTCCCGAACCATCCACTGATTCTGTCACAGCAAGTCTCCTCAC
GCCCGATTCCTCGTCCCTGACCGGTCAAGATGCCCAGCCACAGCCTACAC
GATCTAAAAATGGCCCGGAAAATACAAAAGCACTTTTGATGGATGATTCT
ACGCGGGTCGAGGATCATGCTGTGCCACATGTGGAGCAAGAGATCGTGCA
AGCGGAACACCACAATGCAGATTCTAGGACAGAGGGTGCCCTACTACAGG
TGGACTACGACGGGTTCGATATAACGACGTTCACAAGTATTATAGGGGAA
AACCTCTCGGCAGATTCAATACAAAGAATCCGAAGCGCTGCTGGTAACGA
CCTTGAACGGGCGGTCAACATCTACTTCGATGGCTCTTGGAAGAAATCCC
CAACTCCTCGTGCTCAGAATCAGACTACTCTTACCGCTCGCCAACGCCCG
CTTCCTACACAACCCCATAAGATCGCTACTCCCCTGTCAGCAGCCTGTAA
ACCACACACCCAGACCCTACCGCCTGACAAGGTCACATCTCGCCCTGCGA
CTCAGCCTCCCTTAAGATACATAGGTGCGTTTGGTGTTGGAGCCTGGGCT
ACAAGGAGTGGAGCTGGATTCCTCAGACATGGGGATCTTGTAAATATTGA
GCGTACACGGTCCCAGCCGCTCTCAAAGCGGAACCGTGCCGGGAAACTGG
TTTCTAATCAGAAGAGTGACGTTCTCACCCGGTTTACCACTAAATCAGGG
CAGGAAATAGGAAGATTGCCCCGGGAAACAGCTGAATGGGTCTCAACCCT
GCTGGATCAAAGGGTGTGTACATTCGAAGGTGTATGCGTATACGTGCCGG
ACCGGGTCCGGGTGAATGACACCATCTATCTGCAGCTGCGATGCTACTTG
CGCATCGAGGCATTCCAGCCACGGATATTCAGTCAATCGATGGATGACAA
TAGGTCGGTTGCAATCTTCGAGGAGAAAGAAAGTGCAGATGAGAAAGCAC
TGCGGCTCCGCCAAGTGGCTCTTGTGAAGCTGTTTGATGAAATCCATCTT
CAACCGACATCCGTCAATGACATGACTAGAAATCATAAGAAAGAAGGGTT
GCTTCGTGCGGCGGAAATGGCTGAACAGCACGAGCGAGTGAAAAAAGAAA
ATCAAACAAATGACGACTCTTCGGAGGAGGACAGCCCTGAGCTTGAAGAG
GATCAGCTTGATACCCTCTATAAGAAGGCTCAGTCGTTCGATTTTAGCAT
GCCTGAAGCAGAACCTGCCTCGTCGTTTACCTTGCATCTTCGAAAATATC
AGAGGCAGGCACTATACTGGATGCTCGCAAAGGAAAAGGACAATAAGTCT
GCAAGGGAGACGTCGCTGCATCCCTTATGGGAGGAGTACAGTTGGCCGTC
CAGGGATGTCGACGACAAAGAACTCCCAGTTGTGGCTGGCATTGACCACT
TTTACGTCAACCCTTACTCTGGCGAGCTTAGCCTTGACTTCCCTGTCCAA
GAGCAGCATTGCCTTGGGGGGATCCTGGCAGATGAAATGGGCCTGGGTAA
GACGATTGAGATGCTCAGTTTGGTCCACTCTCATCGCATTATGCCTCAGA
AGCCCACTGATCTTGTGAGGTTGCCTCAGTCGGCTTCCGGGGTCGTACCC
GCACCATATACCACTCTTGTGATTGCGCCCACATCCCTTCTCTCGCAGTG
GGAAAGTGAAGCACTGAAGGCTTCGCAGCCGGGAACAATGAACGTCCTTA
TGTATTACGGGGCGGACAAGAATATCAATCTCAAAAACCTCTGCGCTTCG
GGAAATGCTGCTGCCCCCAATTTAATCATAACCAGCTATGGCGTTGTTCT
CTCGGAATACCGTCAGCATATGTCCGCGTTGCTCTCATCTATGAGCTCCG
GTGGCCTATTTTCCGTGGACTTCTTCCGCGTTATCGTCGATGAAGCTCAT
GTAATCAAGAACCGTCTGTCAAAGACAGCCAAGGCGTGCTATGAGCTCAA
GGCAACCCATCGTTGGGTGTTGACAGGAACTCCCATCGTTAATCGCCTGG
AGGACCTGTTCAGCCTTGTGAGATTTCTCAAGGTCGAGCCATGGAATAAC
TTCTCATTCTGGAAGACATTTATTACCGTGCCTTTTGAGTCCAAGGACTA
TGTGCGCGCCCTGAACGTTGTGCAGAGCGTGCTGGAGCCCCTGGTCCTCC
GACGTACGAAGACAATGAAGACCCCCGAGGGTGAACCTTTAGTGCCTTTA
CCACGTCGCACCATCACAATAGAGGAAGTCGAACTTCCAGACCAGGAGCG
GGAGATTTATGATCTTATCTTTACACGGGCAAAGCAGACGTTCAATCACA
ATGTCGAAGCTGGCACTCTGTTGAAGTCCTATTCAACAATCTTCGCACAA
ATTCTCCGCCTCCGCCAGACCTGCTGTCATCCTATCCTCACACGCAACAA
AGCGATAGTTGCAGACGAGGAAGATGCAGCAGCGGCTGCTGACGCAGCCA
ACGACCTCAAGGACGACATGGATCTTCAAGATCTCATTGATCGCTTCAAG
GCATCCACCGAAGCAGCCGAATCCAACGAGCCTCAGGATCCCTCCGCCAA
ATTCACTGCCCATGCATTGAAACAAATCCAAAACGAAGCCAGCGGCGAAT
GTCCCATTTGCTCGGAAGAGCCCATGATTGACCCTGCCGTAACGGCATGC
TGGCACAGTGCATGCAAGAAATGTCTGGAGGACTACATCCGCCACCAAAC
CGACAAGGGCATGGACCCTCGGTGCTTTTCATGCCGAGCACCCACCACGT
CGCGGGACATTTTCGAAGTGGTTCGTCATGAAAGCCCCAATACCACACCC
GAAGACGATATATATAGCAGTACTCCAACCCCCTCTCAAGCGCCTCCCCG
AATAAGCCTCCGCCGTATCCACCCTCTTTCGCCGTCTGCCCATACATCTG
CCAAAGTGCATGCCCTTCTCGCTCATCTTGCCCGCGTCCCTGCCAATACC
AAATCCGTTGTCTTTTCCCAATTTACCAGTTTCCTCGACCTCATTTCCCC
CCAACTCACCCGTGCGGGTATCCATCACGTCCGTCTGGATGGTACCATGC
CGCACAAAGCCCGTGCGGAAACCCTCGCGCAATTCAACCGGGTCGAAACC
TTTGCCGACCAAAATGAAATTGACAACGATGTCGACGCCAACGATTCCAC
CCAGCTTCCCCTCTCCAGGGCAAAGCACAGACACTCGACCGCCCCGCCCC
CTCCCACCGTTCTTCTTATCAGTCTCCGCGCCGGAGGTGTGGGTCTTAAT
CTCACGGCAGCTAGTAATGTCTTCATGATGGATCCTTGGTGGAGCTTTGC
AATTGAGGCTCAGGCTATTGATCGGGTTCATCGCATGGGTCAGACACGGG
ATGTGCAAGTGACACGGTTCGTGGTGAAGGACTCCATCGAGGGAAGAATG
TTGAGGGTTCAGGAACGGAAGATGAATATTGCAGGGTCTTTAGGACTGAG
GGTTGGTGGAGATGGCTCCGAGGATGACAAGAAGAAGGAAAGAATCGAGG
AGTTGAGGTTGTTATTTGAATAGTTGAGGTCTAAGGGCATAGGGACAGAA
GGCTTTAGCGTATGGCATATTACGATACCAACTTAGAGATAGATTCCGGA
TATGTTTTGTATAGCCGGCCGGTTTATATAACAGGTTCACAGGATGGCCT
ATACAACAGTCCCATATTGGAATTCACAC back to topCoding sequence (CDS) from alignment at ch1:657279..661107+ >KJC3_000364-T1 ID=KJC3_000364-T1|Name=KJC3_000364-T1|organism=Aspergillus niger KJC3|type=CDS|length=3435bp|location=Sequence derived from alignment at ch1:657279..661107+ (Aspergillus niger KJC3)
ATGGATGATTCTACGCGGGTCGAGGATCATGCTGTGCCACATGTGGAGCA
AGAGATCGTGCAAGCGGAACACCACAATGCAGATTCTAGGACAGAGGGTG
CCCTACTACAGGTGGACTACGACGGGTTCGATATAACGACGTTCACAAGT
ATTATAGGGGAAAACCTCTCGGCAGATTCAATACAAAGAATCCGAAGCGC
TGCTGGTAACGACCTTGAACGGGCGGTCAACATCTACTTCGATGGCTCTT
GGAAGAAATCCCCAACTCCTCGTGCTCAGAATCAGACTACTCTTACCGCT
CGCCAACGCCCGCTTCCTACACAACCCCATAAGATCGCTACTCCCCTGTC
AGCAGCCTGTAAACCACACACCCAGACCCTACCGCCTGACAAGGTCACAT
CTCGCCCTGCGACTCAGCCTCCCTTAAGATACATAGGTGCGTTTGGTGTT
GGAGCCTGGGCTACAAGGAGTGGAGCTGGATTCCTCAGACATGGGGATCT
TGTAAATATTGAGCGTACACGGTCCCAGCCGCTCTCAAAGCGGAACCGTG
CCGGGAAACTGGTTTCTAATCAGAAGAGTGACGTTCTCACCCGGTTTACC
ACTAAATCAGGGCAGGAAATAGGAAGATTGCCCCGGGAAACAGCTGAATG
GGTCTCAACCCTGCTGGATCAAAGGGTGTGTACATTCGAAGGTGTATGCG
TATACGTGCCGGACCGGGTCCGGGTGAATGACACCATCTATCTGCAGCTG
CGATGCTACTTGCGCATCGAGGCATTCCAGCCACGGATATTCAGTCAATC
GATGGATGACAATAGGTCGGTTGCAATCTTCGAGGAGAAAGAAAGTGCAG
ATGAGAAAGCACTGCGGCTCCGCCAAGTGGCTCTTGTGAAGCTGTTTGAT
GAAATCCATCTTCAACCGACATCCGTCAATGACATGACTAGAAATCATAA
GAAAGAAGGGTTGCTTCGTGCGGCGGAAATGGCTGAACAGCACGAGCGAG
TGAAAAAAGAAAATCAAACAAATGACGACTCTTCGGAGGAGGACAGCCCT
GAGCTTGAAGAGGATCAGCTTGATACCCTCTATAAGAAGGCTCAGTCGTT
CGATTTTAGCATGCCTGAAGCAGAACCTGCCTCGTCGTTTACCTTGCATC
TTCGAAAATATCAGAGGCAGGCACTATACTGGATGCTCGCAAAGGAAAAG
GACAATAAGTCTGCAAGGGAGACGTCGCTGCATCCCTTATGGGAGGAGTA
CAGTTGGCCGTCCAGGGATGTCGACGACAAAGAACTCCCAGTTGTGGCTG
GCATTGACCACTTTTACGTCAACCCTTACTCTGGCGAGCTTAGCCTTGAC
TTCCCTGTCCAAGAGCAGCATTGCCTTGGGGGGATCCTGGCAGATGAAAT
GGGCCTGGGTAAGACGATTGAGATGCTCAGTTTGGTCCACTCTCATCGCA
TTATGCCTCAGAAGCCCACTGATCTTGTGAGGTTGCCTCAGTCGGCTTCC
GGGGTCGTACCCGCACCATATACCACTCTTGTGATTGCGCCCACATCCCT
TCTCTCGCAGTGGGAAAGTGAAGCACTGAAGGCTTCGCAGCCGGGAACAA
TGAACGTCCTTATGTATTACGGGGCGGACAAGAATATCAATCTCAAAAAC
CTCTGCGCTTCGGGAAATGCTGCTGCCCCCAATTTAATCATAACCAGCTA
TGGCGTTGTTCTCTCGGAATACCGTCAGCATATGTCCGCGTTGCTCTCAT
CTATGAGCTCCGGTGGCCTATTTTCCGTGGACTTCTTCCGCGTTATCGTC
GATGAAGCTCATGTAATCAAGAACCGTCTGTCAAAGACAGCCAAGGCGTG
CTATGAGCTCAAGGCAACCCATCGTTGGGTGTTGACAGGAACTCCCATCG
TTAATCGCCTGGAGGACCTGTTCAGCCTTGTGAGATTTCTCAAGGTCGAG
CCATGGAATAACTTCTCATTCTGGAAGACATTTATTACCGTGCCTTTTGA
GTCCAAGGACTATGTGCGCGCCCTGAACGTTGTGCAGAGCGTGCTGGAGC
CCCTGGTCCTCCGACGTACGAAGACAATGAAGACCCCCGAGGGTGAACCT
TTAGTGCCTTTACCACGTCGCACCATCACAATAGAGGAAGTCGAACTTCC
AGACCAGGAGCGGGAGATTTATGATCTTATCTTTACACGGGCAAAGCAGA
CGTTCAATCACAATGTCGAAGCTGGCACTCTGTTGAAGTCCTATTCAACA
ATCTTCGCACAAATTCTCCGCCTCCGCCAGACCTGCTGTCATCCTATCCT
CACACGCAACAAAGCGATAGTTGCAGACGAGGAAGATGCAGCAGCGGCTG
CTGACGCAGCCAACGACCTCAAGGACGACATGGATCTTCAAGATCTCATT
GATCGCTTCAAGGCATCCACCGAAGCAGCCGAATCCAACGAGCCTCAGGA
TCCCTCCGCCAAATTCACTGCCCATGCATTGAAACAAATCCAAAACGAAG
CCAGCGGCGAATGTCCCATTTGCTCGGAAGAGCCCATGATTGACCCTGCC
GTAACGGCATGCTGGCACAGTGCATGCAAGAAATGTCTGGAGGACTACAT
CCGCCACCAAACCGACAAGGGCATGGACCCTCGGTGCTTTTCATGCCGAG
CACCCACCACGTCGCGGGACATTTTCGAAGTGGTTCGTCATGAAAGCCCC
AATACCACACCCGAAGACGATATATATAGCAGTACTCCAACCCCCTCTCA
AGCGCCTCCCCGAATAAGCCTCCGCCGTATCCACCCTCTTTCGCCGTCTG
CCCATACATCTGCCAAAGTGCATGCCCTTCTCGCTCATCTTGCCCGCGTC
CCTGCCAATACCAAATCCGTTGTCTTTTCCCAATTTACCAGTTTCCTCGA
CCTCATTTCCCCCCAACTCACCCGTGCGGGTATCCATCACGTCCGTCTGG
ATGGTACCATGCCGCACAAAGCCCGTGCGGAAACCCTCGCGCAATTCAAC
CGGGTCGAAACCTTTGCCGACCAAAATGAAATTGACAACGATGTCGACGC
CAACGATTCCACCCAGCTTCCCCTCTCCAGGGCAAAGCACAGACACTCGA
CCGCCCCGCCCCCTCCCACCGTTCTTCTTATCAGTCTCCGCGCCGGAGGT
GTGGGTCTTAATCTCACGGCAGCTAGTAATGTCTTCATGATGGATCCTTG
GTGGAGCTTTGCAATTGAGGCTCAGGCTATTGATCGGGTTCATCGCATGG
GTCAGACACGGGATGTGCAAGTGACACGGTTCGTGGTGAAGGACTCCATC
GAGGGAAGAATGTTGAGGGTTCAGGAACGGAAGATGAATATTGCAGGGTC
TTTAGGACTGAGGGTTGGTGGAGATGGCTCCGAGGATGACAAGAAGAAGG
AAAGAATCGAGGAGTTGAGGTTGTTATTTGAATAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005524 | ATP binding |
| GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides |
| GO:0008270 | zinc ion binding |
| GO:0003676 | nucleic acid binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_000364-T1.utr3p1 | KJC3_000364-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR027417 |
| DBxref | InterPro:IPR000330 |
| DBxref | InterPro:IPR038718 |
| DBxref | InterPro:IPR013083 |
| DBxref | InterPro:IPR014905 |
| DBxref | InterPro:IPR014001 |
| DBxref | InterPro:IPR001841 |
| DBxref | InterPro:IPR001650 |
| DBxref | PFAM:PF00176 |
| DBxref | PFAM:PF08797 |
| DBxref | PFAM:PF00271 |
| Product | DNA helicase rad5 |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch1 | supercontig | ch1:657279..661107 + |
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