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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch1:1295502..1297251+ Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_000590-T1 ID=KJC3_000590-T1|Name=KJC3_000590-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1750bp|location=Sequence derived from alignment at ch1:1295502..1297251+ (Aspergillus niger KJC3)
AACAGCAACAACAACATCCATCCGTTTCACCGCCATTACTTTTCCATCCA
TCCAATCTGGCATCATGTCCTCCGCTCTGGATCGCTCCAGTCGACCACCC
ATTGGAAGTATACGTCGAAGGACGAAAAAGGCGTGTGAAACCTGCAAGTT
GCGTAAGCGGAAATGTGACGGTCATGAGCCATGCTCATTCTGCCTCAAAT
ACGAATATGACTGCGCGTACGAGGCTCAACCACGGAAGAAGCCATCAAGG
CCAAGCATTGCAAGGCCTTCGACGAAGCCTCTTGAACGGGCATCCTCTCC
AGCACTTGCGGCAAGGGCTGATGTCAATCAACAGCAGATGGAGGCGAACT
CAGGCACCGCATTCCCTCATTTTTTGGGAAAGAGCTTGAACCCGCAGAAC
CCTCCAAAGGTGCACGGCTTCAGCTGGAACCTAGGGCTTCGACATGAGCC
CATACAACAATTCGCTAACATCTCGAGCCTAGTCTCTAAAGATGAGATGA
GTGCTCTTGTTGGCCACTATATAGAACGTATACACCCCATATATGCTGTT
CTCGATCTTGATATGCTAGAGAAAAAGGTCGGACTGCGCTGGGATAATTC
TATCACTTTTGACAGCTATGATCCAGTTCTTTGCGGTGTTGCGGCGTTGG
GATCGCTTTACTCAGGCGATAATGGACATAGGAACGAAGAAGCGCTGGTC
CAGTGCGCAAAGGAAATCTTGGAAGCAACCTGTACTATGAATAAACCACT
CATACACCATGCTACTGGATGGGTCTTACGTACCCTCTACCTGCGAAGCA
CCGGCTGTCCTCATACCTCATGGATGGCCAGCTGCTCTGCAATGCACATC
ATCGAAGCAGCAGGGGCACATCAGGATCCAGGGATGATCTCTCTGGTGTA
TTCTGACACGGCGGATGTTGGTGTCCATGAAGAAAGTCAGCGCAGGCTAT
TTTGGGTTGCGACGGTTCTAAATACGTGGATCTCTTATGAATATGGCAGG
TCTCGCGTCATCTTACGAGGCATTTCCTGCAAGCCACCTGTGCCACGAGC
GGGAGATTTGACTGCGGAACTGGTCTCATTGTTCCAGATTTCTCAGCGGC
TGGATCCCGATCAGAACAATAGACCTTCAGACCTTGAAGATGTATTATAT
CACGTCCAAAGTCTAACTCTTAGCCACGATGCCTTAGTTCTGTCCCAAGC
TAATCTAGCACTTACGATATACCGTCGTCTCCGTGTGGCTGCTTCCAGTA
TTTCAAACGATGTCATAAACTGCGTCATTCGAATGGGCAGTGACGGTACT
GCTGCTGCGGTCCGTATGTCTGAGAATCGCAGTCCTTGGTGGCATGTTGC
CAATGTTCCCTTTCAGTTTCTCTGCATCTTGCTCGCAATAGATTCTAAGG
AGTCATTGTCACACGTGAGCCACGCCATGCGCTCATTCAAGACTATTGGG
AGCCACTTTAATACGCCTACTGTCCACATCGCTATAGAGACCGTCGATTC
CTTAATCAAGCTGTTACAAAGGAAGAAAGAGCGGGAAATTAATCTTCTAA
GGGATAGCATCCAGGATCAGGACTCAGGACCGTTTGAACGAAACTTATCA
TCTACGCAAGAGTACGGTTCGCCATTGCAAGGAGGCTTATTCGATGGAAA
CAATCTAGAAATGATAGACTGGGATTGGAACGCCTTTTTCGATGCCGAAA
TACCACTCTTTGACGACAGGGGGCATGGCGGGCAGATGAGGTATGGATAA
back to topCoding sequence (CDS) from alignment at ch1:1295502..1297251+ >KJC3_000590-T1 ID=KJC3_000590-T1|Name=KJC3_000590-T1|organism=Aspergillus niger KJC3|type=CDS|length=1686bp|location=Sequence derived from alignment at ch1:1295502..1297251+ (Aspergillus niger KJC3)
ATGTCCTCCGCTCTGGATCGCTCCAGTCGACCACCCATTGGAAGTATACG
TCGAAGGACGAAAAAGGCGTGTGAAACCTGCAAGTTGCGTAAGCGGAAAT
GTGACGGTCATGAGCCATGCTCATTCTGCCTCAAATACGAATATGACTGC
GCGTACGAGGCTCAACCACGGAAGAAGCCATCAAGGCCAAGCATTGCAAG
GCCTTCGACGAAGCCTCTTGAACGGGCATCCTCTCCAGCACTTGCGGCAA
GGGCTGATGTCAATCAACAGCAGATGGAGGCGAACTCAGGCACCGCATTC
CCTCATTTTTTGGGAAAGAGCTTGAACCCGCAGAACCCTCCAAAGGTGCA
CGGCTTCAGCTGGAACCTAGGGCTTCGACATGAGCCCATACAACAATTCG
CTAACATCTCGAGCCTAGTCTCTAAAGATGAGATGAGTGCTCTTGTTGGC
CACTATATAGAACGTATACACCCCATATATGCTGTTCTCGATCTTGATAT
GCTAGAGAAAAAGGTCGGACTGCGCTGGGATAATTCTATCACTTTTGACA
GCTATGATCCAGTTCTTTGCGGTGTTGCGGCGTTGGGATCGCTTTACTCA
GGCGATAATGGACATAGGAACGAAGAAGCGCTGGTCCAGTGCGCAAAGGA
AATCTTGGAAGCAACCTGTACTATGAATAAACCACTCATACACCATGCTA
CTGGATGGGTCTTACGTACCCTCTACCTGCGAAGCACCGGCTGTCCTCAT
ACCTCATGGATGGCCAGCTGCTCTGCAATGCACATCATCGAAGCAGCAGG
GGCACATCAGGATCCAGGGATGATCTCTCTGGTGTATTCTGACACGGCGG
ATGTTGGTGTCCATGAAGAAAGTCAGCGCAGGCTATTTTGGGTTGCGACG
GTTCTAAATACGTGGATCTCTTATGAATATGGCAGGTCTCGCGTCATCTT
ACGAGGCATTTCCTGCAAGCCACCTGTGCCACGAGCGGGAGATTTGACTG
CGGAACTGGTCTCATTGTTCCAGATTTCTCAGCGGCTGGATCCCGATCAG
AACAATAGACCTTCAGACCTTGAAGATGTATTATATCACGTCCAAAGTCT
AACTCTTAGCCACGATGCCTTAGTTCTGTCCCAAGCTAATCTAGCACTTA
CGATATACCGTCGTCTCCGTGTGGCTGCTTCCAGTATTTCAAACGATGTC
ATAAACTGCGTCATTCGAATGGGCAGTGACGGTACTGCTGCTGCGGTCCG
TATGTCTGAGAATCGCAGTCCTTGGTGGCATGTTGCCAATGTTCCCTTTC
AGTTTCTCTGCATCTTGCTCGCAATAGATTCTAAGGAGTCATTGTCACAC
GTGAGCCACGCCATGCGCTCATTCAAGACTATTGGGAGCCACTTTAATAC
GCCTACTGTCCACATCGCTATAGAGACCGTCGATTCCTTAATCAAGCTGT
TACAAAGGAAGAAAGAGCGGGAAATTAATCTTCTAAGGGATAGCATCCAG
GATCAGGACTCAGGACCGTTTGAACGAAACTTATCATCTACGCAAGAGTA
CGGTTCGCCATTGCAAGGAGGCTTATTCGATGGAAACAATCTAGAAATGA
TAGACTGGGATTGGAACGCCTTTTTCGATGCCGAAATACCACTCTTTGAC
GACAGGGGGCATGGCGGGCAGATGAGGTATGGATAA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005634 | nucleus |
| GO:0042025 | host cell nucleus |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific |
| GO:0008270 | zinc ion binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006351 | transcription, DNA-templated |
| GO:0006355 | regulation of transcription, DNA-templated |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_000590-T1.utr5p1 | KJC3_000590-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| Note | antiSMASH:Cluster_1.5 |
| DBxref | InterPro:IPR036864 |
| DBxref | InterPro:IPR007219 |
| DBxref | InterPro:IPR001138 |
| DBxref | PFAM:PF00172 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch1 | supercontig | ch1:1295502..1297251 + |
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