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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch1:1340064..1342395+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_000606-T1 ID=KJC3_000606-T1|Name=KJC3_000606-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2332bp|location=Sequence derived from alignment at ch1:1340064..1342395+ (Aspergillus niger KJC3)
CACCTTGAAAATAAATCAGCGTAGACTACAAACCCAACTACTCAGCTATC
AACAAACCCGATCCTCTCAAGGCGGTGACTGTGCACGTGACCTGCCCGAT
TCCCGCTGCGCCAAAAGAAGCCAAGCCCATCTTCACTCGCCATCGAAGAA
CCATTTCATCATATTCTTCCTCCAACCAATCCTCCTCTCCCCCTCACAAC
TTCAGAATGGCATCCATAGCGGAGGGCCTATTCAAGTCTCTTCCCAAGCC
GAAATACACCGGCGAGGAGGAAGAGCTACCACAACATGCACAACCCCGAG
GTCCGCGGGTCGTAGGCCCGGGACAACTCGACGAAACACAGATTGTTCTC
CGGGTTGGTAGCACCGCATCCATACATAATCCACAGAAATCTTAGCCCCC
CTTTACCGTTTCAACTCAATGCCAATAATGCTAACGATGACTACGACGAA
TACAGAGAACCGGGCCCCCTCCCTACCAGAACCGAGCCGGATGGCGGCCC
CGCGCCCCCGAAGACTTCGGCGATGGCGGCGCGTTCCCCGAGATTCTAGT
CGCGCAGTACCCGCTCGATATGGGCCGGAAGGGCACATCATCGACATCGA
ACGCCCTAGCCGTGCAAGTCGACGCCGAGGGAAAAGTCAAATACGATGCT
ATCGCGCGCCGCGGACACAGCGACAACCGGATCGTGCATGCCTCCTTTAA
GGATCTGATTCCGCTGCGCCAGCGCGTCGATATGGGCGAGGTGTCATTGG
ACCGGCCGTCGGAGGAAGAAGTCCAGGCGCAGATGGAGAAGACAAAGAAC
GCGCTCGCCAGCTTAGTGGAGGGTGCGGCGGCGGCGCAGAAGCCTAAGAA
TGTGAAGGGCGGGCGGCGAGCGGAACCTACGTTTGTGAGGTATACGCCGG
CTAATCAGATGGGTGATACGTCGAAGAAGAATGATCGTATTATGAAGATC
GTGGAGAGACAGCAGGATCCCATGGAACCGCCTAAGTTCAAGCACAAGAA
GATCCCTCGCGGTCCGCCGTCGCCGCCTCCGCCGGTTATGCATTCGCCGC
CGAGGAAGCTCACGGCTGAGGATCAGGAAGCGTGGAGGATCCCGCCGCCT
GTGTCGAATTGGAAGAATCCTAAGGGTTACACGGTTCCGTTGGATAAGCG
GTTGGCGGCTGATGGACGCGGGCTGCAGGATGTGTCGATCAACGATAAGT
TCGCGCAGTTCGCGGAGGCGCTGTTTACGGCGGATCGGCACGCCAGAGAG
GAGGTCAGGCTGCGTGCTCAGATGCAGCAGAAGCTGGCGGAGAAGGAGAA
GGCCCAGAAGGAGGAGCATCTGCGCGCGTTGGCTCAGAAGGCCCGCGAGG
AGCGTGCAGCTGCTGGTAGCAGTCGGCGCGATTCTCGTGCCGGATCTCGC
TCGCCGTCGCGTAGCGTCAGCCGCAGCCCGTCGCCGTACTCGGCTAGTGA
GGATGAGGATGCTGCTCGGGAGCGGGAGCGCGCGCGTCGTGAGCGTCGTC
AGGAGGCGGAGAGACAACTCCGCCAGTCGCGGATGGGTACGGAGAGACGC
ATCCAGATGATGGCACGCGAGCAGAACCGGGATATTTCCGAGAAGGTGGC
GCTGGGATTGGCCAAGCCGACGCAGGCATCCGAATCAATGTATGACTCGC
GTCTGTTCAATCAGACGAGCGGGATGGACTCGGGCTTCAACGAGGATAAC
CCGTACGACAAACCGCTGTTTGCCGCGCAGGAAGCCATTAACAGCATCTA
CCGTCCACGGGCGCAGGCGGATGACGATGACGGCGAAGGCGCCGAGGGCG
AGATGAGCAAGATCCAGAAACAGAACCGGTTCGAGGTGCTCGGTAGAGCG
AAGGAAGGGTTCCGCGGCGCTGACATAGCTGAGGTGAGTCTATGCGTCCT
CTTACTCCACCGTACTCAAGAAATATACGCTAACTGATCCCCACAATTAG
GCTCGTGATGGCCCCGTGCAATTCGAAAAAGATACCACTGACCCCTTCGG
CATCGACAGCATGATCGCCGACGTCACTGGCTCCGGTGCAGGCCAAAAGC
GCTATGGTATCCAGGAAGTCGACCGTTCGGAACGGGGCTCCAAACGGGCG
CGTGTCGATGATGATTAATTGTGTTGTGGATATACCTTACTTACTCTTTC
TACTTTTAACATACGCGGGGTTTAGATATCTACCTACGTACTTTGTTCCA
CTGTACTCAAATCATGTCCTATCCTTTGCTTTGGGGGGGGGGGGTTTTAC
GTGCATTGCTGCGGGCGTTGTGTGTTACCGGTTATACTCTTTTTCTTATG
GCTGAAGAAAATGAAAAAGTGATTCTTCACTC back to topCoding sequence (CDS) from alignment at ch1:1340064..1342395+ >KJC3_000606-T1 ID=KJC3_000606-T1|Name=KJC3_000606-T1|organism=Aspergillus niger KJC3|type=CDS|length=5229bp|location=Sequence derived from alignment at ch1:1340064..1342395+ (Aspergillus niger KJC3)
ATGGCATCCATAGCGGAGGGCCTATTCAAGTCTCTTCCCAAGCCGAAATA
CACCGGCGAGGAGGAAGAGCTACCACAACATGCACAACCCCGAGGTCCGC
GGGTCGTAGGCCCGGGACAACTCGACGAAACACAGATTGTTCTCCGGAGA
ACCGGGCCCCCTCCCTACCAGAACCGAGCCGGATGGCGGCCCCGCGCCCC
CGAAGACTTCGGCGATGGCGGCGCGTTCCCCGAGATTCTAGTCGCGCAGT
ACCCGCTCGATATGGGCCGGAAGGGCACATCATCGACATCGAACGCCCTA
GCCGTGCAAGTCGACGCCGAGGGAAAAGTCAAATACGATGCTATCGCGCG
CCGCGGACACAGCGACAACCGGATCGTGCATGCCTCCTTTAAGGATCTGA
TTCCGCTGCGCCAGCGCGTCGATATGGGCGAGGTGTCATTGGACCGGCCG
TCGGAGGAAGAAGTCCAGGCGCAGATGGAGAAGACAAAGAACGCGCTCGC
CAGCTTAGTGGAGGGTGCGGCGGCGGCGCAGAAGCCTAAGAATGTGAAGG
GCGGGCGGCGAGCGGAACCTACGTTTGTGAGGTATACGCCGGCTAATCAG
ATGGGTGATACGTCGAAGAAGAATGATCGTATTATGAAGATCGTGGAGAG
ACAGCAGGATCCCATGGAACCGCCTAAGTTCAAGCACAAGAAGATCCCTC
GCGGTCCGCCGTCGCCGCCTCCGCCGGTTATGCATTCGCCGCCGAGGAAG
CTCACGGCTGAGGATCAGGAAGCGTGGAGGATCCCGCCGCCTGTGTCGAA
TTGGAAGAATCCTAAGGGTTACACGGTTCCGTTGGATAAGCGGTTGGCGG
CTGATGGACGCGGGCTGCAGGATGTGTCGATCAACGATAAGTTCGCGCAG
TTCGCGGAGGCGCTGTTTACGGCGGATCGGCACGCCAGAGAGGAGGTCAG
GCTGCGTGCTCAGATGCAGCAGAAGCTGGCGGAGAAGGAGAAGGCCCAGA
AGGAGGAGCATCTGCGCGCGTTGGCTCAGAAGGCCCGCGAGGAGCGTGCA
GCTGCTGGTAGCAGTCGGCGCGATTCTCGTGCCGGATCTCGCTCGCCGTC
GCGTAGCGTCAGCCGCAGCCCGTCGCCGTACTCGGCTAGTGAGGATGAGG
ATGCTGCTCGGGAGCGGGAGCGCGCGCGTCGTGAGCGTCGTCAGGAGGCG
GAGAGACAACTCCGCCAGTCGCGGATGGGTACGGAGAGACGCATCCAGAT
GATGGCACGCGAGCAGAACCGGGATATTTCCGAGAAGGTGGCGCTGGGAT
TGGCCAAGCCGACGCAGGCATCCGAATCAATGTATGACTCGCGTCTGTTC
AATCAGACGAGCGGGATGGACTCGGGCTTCAACGAGGATAACCCGTACGA
CAAACCGCTGTTTGCCGCGCAGGAAGCCATTAACAGCATCTACCGTCCAC
GGGCGCAGGCGGATGACGATGACGGCGAAGGCGCCGAGGGCGAGATGAGC
AAGATCCAGAAACAGAACCGGTTCGAGGTGCTCGGTAGAGCGAAGGAAGG
GTTCCGCGGCGCTGACATAGCTGAGGCTCGTGATGGCCCCGTGCAATTCG
AAAAAGATACCACTGACCCCTTCGGCATCGACAGCATGATCGCCGACGTC
ACTGGCTCCGGTGCAGGCCAAAAGCGCTATGGTATCCAGGAAGTCGACCG
TTCGGAACGGGGCTCCAAACGGGCGCGTGTCGATGATGATTAAATGGCAT
CCATAGCGGAGGGCCTATTCAAGTCTCTTCCCAAGCCGAAATACACCGGC
GAGGAGGAAGAGCTACCACAACATGCACAACCCCGAGGTCCGCGGGTCGT
AGGCCCGGGACAACTCGACGAAACACAGATTGTTCTCCGGAGAACCGGGC
CCCCTCCCTACCAGAACCGAGCCGGATGGCGGCCCCGCGCCCCCGAAGAC
TTCGGCGATGGCGGCGCGTTCCCCGAGATTCTAGTCGCGCAGTACCCGCT
CGATATGGGCCGGAAGGGCACATCATCGACATCGAACGCCCTAGCCGTGC
AAGTCGACGCCGAGGGAAAAGTCAAATACGATGCTATCGCGCGCCGCGGA
CACAGCGACAACCGGATCGTGCATGCCTCCTTTAAGGATCTGATTCCGCT
GCGCCAGCGCGTCGATATGGGCGAGGTGTCATTGGACCGGCCGTCGGAGG
AAGAAGTCCAGGCGCAGATGGAGAAGACAAAGAACGCGCTCGCCAGCTTA
GTGGAGGGTGCGGCGGCGGCGCAGAAGCCTAAGAATGTGAAGGGCGGGCG
GCGAGCGGAACCTACGTTTGTGAGGTATACGCCGGCTAATCAGATGGGTG
ATACGTCGAAGAAGAATGATCGTATTATGAAGATCGTGGAGAGACAGCAG
GATCCCATGGAACCGCCTAAGTTCAAGCACAAGAAGATCCCTCGCGGTCC
GCCGTCGCCGCCTCCGCCGGTTATGCATTCGCCGCCGAGGAAGCTCACGG
CTGAGGATCAGGAAGCGTGGAGGATCCCGCCGCCTGTGTCGAATTGGAAG
AATCCTAAGGGTTACACGGTTCCGTTGGATAAGCGGTTGGCGGCTGATGG
ACGCGGGCTGCAGGATGTGTCGATCAACGATAAGTTCGCGCAGTTCGCGG
AGGCGCTGTTTACGGCGGATCGGCACGCCAGAGAGGAGGTCAGGCTGCGT
GCTCAGATGCAGCAGAAGCTGGCGGAGAAGGAGAAGGCCCAGAAGGAGGA
GCATCTGCGCGCGTTGGCTCAGAAGGCCCGCGAGGAGCGTGCAGCTGCTG
GTAGCAGTCGGCGCGATTCTCGTGCCGGATCTCGCTCGCCGTCGCGTAGC
GTCAGCCGCAGCCCGTCGCCGTACTCGGCTAGTGAGGATGAGGATGCTGC
TCGGGAGCGGGAGCGCGCGCGTCGTGAGCGTCGTCAGGAGGCGGAGAGAC
AACTCCGCCAGTCGCGGATGGGTACGGAGAGACGCATCCAGATGATGGCA
CGCGAGCAGAACCGGGATATTTCCGAGAAGGTGGCGCTGGGATTGGCCAA
GCCGACGCAGGCATCCGAATCAATGTATGACTCGCGTCTGTTCAATCAGA
CGAGCGGGATGGACTCGGGCTTCAACGAGGATAACCCGTACGACAAACCG
CTGTTTGCCGCGCAGGAAGCCATTAACAGCATCTACCGTCCACGGGCGCA
GGCGGATGACGATGACGGCGAAGGCGCCGAGGGCGAGATGAGCAAGATCC
AGAAACAGAACCGGTTCGAGGTGCTCGGTAGAGCGAAGGAAGGGTTCCGC
GGCGCTGACATAGCTGAGGCTCGTGATGGCCCCGTGCAATTCGAAAAAGA
TACCACTGACCCCTTCGGCATCGACAGCATGATCGCCGACGTCACTGGCT
CCGGTGCAGGCCAAAAGCGCTATGGTATCCAGGAAGTCGACCGTTCGGAA
CGGGGCTCCAAACGGGCGCGTGTCGATGATGATTAAATGGCATCCATAGC
GGAGGGCCTATTCAAGTCTCTTCCCAAGCCGAAATACACCGGCGAGGAGG
AAGAGCTACCACAACATGCACAACCCCGAGGTCCGCGGGTCGTAGGCCCG
GGACAACTCGACGAAACACAGATTGTTCTCCGGAGAACCGGGCCCCCTCC
CTACCAGAACCGAGCCGGATGGCGGCCCCGCGCCCCCGAAGACTTCGGCG
ATGGCGGCGCGTTCCCCGAGATTCTAGTCGCGCAGTACCCGCTCGATATG
GGCCGGAAGGGCACATCATCGACATCGAACGCCCTAGCCGTGCAAGTCGA
CGCCGAGGGAAAAGTCAAATACGATGCTATCGCGCGCCGCGGACACAGCG
ACAACCGGATCGTGCATGCCTCCTTTAAGGATCTGATTCCGCTGCGCCAG
CGCGTCGATATGGGCGAGGTGTCATTGGACCGGCCGTCGGAGGAAGAAGT
CCAGGCGCAGATGGAGAAGACAAAGAACGCGCTCGCCAGCTTAGTGGAGG
GTGCGGCGGCGGCGCAGAAGCCTAAGAATGTGAAGGGCGGGCGGCGAGCG
GAACCTACGTTTGTGAGGTATACGCCGGCTAATCAGATGGGTGATACGTC
GAAGAAGAATGATCGTATTATGAAGATCGTGGAGAGACAGCAGGATCCCA
TGGAACCGCCTAAGTTCAAGCACAAGAAGATCCCTCGCGGTCCGCCGTCG
CCGCCTCCGCCGGTTATGCATTCGCCGCCGAGGAAGCTCACGGCTGAGGA
TCAGGAAGCGTGGAGGATCCCGCCGCCTGTGTCGAATTGGAAGAATCCTA
AGGGTTACACGGTTCCGTTGGATAAGCGGTTGGCGGCTGATGGACGCGGG
CTGCAGGATGTGTCGATCAACGATAAGTTCGCGCAGTTCGCGGAGGCGCT
GTTTACGGCGGATCGGCACGCCAGAGAGGAGGTCAGGCTGCGTGCTCAGA
TGCAGCAGAAGCTGGCGGAGAAGGAGAAGGCCCAGAAGGAGGAGCATCTG
CGCGCGTTGGCTCAGAAGGCCCGCGAGGAGCGTGCAGCTGCTGGTAGCAG
TCGGCGCGATTCTCGTGCCGGATCTCGCTCGCCGTCGCGTAGCGTCAGCC
GCAGCCCGTCGCCGTACTCGGCTAGTGAGGATGAGGATGCTGCTCGGGAG
CGGGAGCGCGCGCGTCGTGAGCGTCGTCAGGAGGCGGAGAGACAACTCCG
CCAGTCGCGGATGGGTACGGAGAGACGCATCCAGATGATGGCACGCGAGC
AGAACCGGGATATTTCCGAGAAGGTGGCGCTGGGATTGGCCAAGCCGACG
CAGGCATCCGAATCAATGTATGACTCGCGTCTGTTCAATCAGACGAGCGG
GATGGACTCGGGCTTCAACGAGGATAACCCGTACGACAAACCGCTGTTTG
CCGCGCAGGAAGCCATTAACAGCATCTACCGTCCACGGGCGCAGGCGGAT
GACGATGACGGCGAAGGCGCCGAGGGCGAGATGAGCAAGATCCAGAAACA
GAACCGGTTCGAGGTGCTCGGTAGAGCGAAGGAAGGGTTCCGCGGCGCTG
ACATAGCTGAGGCTCGTGATGGCCCCGTGCAATTCGAAAAAGATACCACT
GACCCCTTCGGCATCGACAGCATGATCGCCGACGTCACTGGCTCCGGTGC
AGGCCAAAAGCGCTATGGTATCCAGGAAGTCGACCGTTCGGAACGGGGCT
CCAAACGGGCGCGTGTCGATGATGATTAA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005681 | spliceosomal complex |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0000398 | mRNA splicing, via spliceosome |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_000606-T1.utr5p1 | KJC3_000606-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_000606-T1.utr3p1 | KJC3_000606-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG09264DT4 |
| DBxref | InterPro:IPR004015 |
| DBxref | PFAM:PF02731 |
| Product | mRNA splicing protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch1 | supercontig | ch1:1340064..1342395 + |
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