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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch1:1572294..1573648- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_000689-T1 ID=KJC3_000689-T1|Name=KJC3_000689-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1355bp|location=Sequence derived from alignment at ch1:1572294..1573648- (Aspergillus niger KJC3)
ATGACGGACTCGGCATCGCCTGCGAAGCCCGTCCATACCATCGTCCTGGA
CGCCGGTCCCATCTTGAAGAATACCCCGCCGCTATCCACGCTGCTCGCAC
AATGCGAAGAACTCCTCATCACCCCCTCCGTCGTGAGCGAAATCCGTGAC
CCTGACGCCCGCCAGCGCGTGGAGACACTATACCTTCCCTTCTTGAAGCA
GCGCACACCATCCCCGAAAAGCGTCAGCGTCTTGAGCGAATTTGCACGCA
AGACTGGTGATCGGGCTGTCCTGAGTAAAACAGATATTGAGGTACTGGCG
CTTGCATACGAGGTGGAATGCGAGCGCAATGGTGGCGACTGGAGACTGAG
AAGCGTTCCGGGGCAGAAACAGGTGAACGGGAAGCCTCCGGTGAAGGAGG
AGAAGGCCGAAGAGAAGGGAGAGGAGGCTAAAGCCGAAGAGGCCAAGGGT
GAGACTGAGGGCGAGACCACTCAAAAGGAGGAGAACAAGGACGAGGTTGC
TGAGGTGGATGCCGTTGCAGAAGATCTGAAGAACGCAAACCTGGAAGACA
AGGAGACCAGCACACAGGAGACCGAAGTGCAAAATGCCCCCGCAGAGGTC
GAGGCGGAGGAATCAACTCCTCAGGACGCCGATGCCCAAGAGGAGGAAGA
TGATGGCGATGATTCGGATGGTGGTTGGATCACTCCCTCCAACTTGAAGA
AGCGACAGGCCCGCGATGAGGCTAGCTCTGCGGCTGCGGCGCCAGAGCCC
AAGGTGATGCAGGTTGCCACCATGACTACCGATTTTGCGGTATGCTTTGA
AACTTACTTCAATGTCCATGTTCCTTACTAACTATAATAAAGTGCCAAAA
CGTGCTGCTGCAGATGAACTTGAACTTGCTCTCCACTTCCACTCTGCAGC
GAATCCGCCATCTGAAGTCTTTCATCAAGCGCTGCCATGCCTGTTTCTTC
ACCACCAAGGACATGAACAAGCAATTTTGTCCCCGCTGCGGCAAGGACAC
GCTCACTCGTGTCTCCTGCACGACAGACGCGAATGGACAGTTCAAGATGC
ACCTGAAAAAGAACATGCAGTGGAACAACCGCGGCAATCGTTTCAGTGTT
CCTAAGCCCGTACACGGCACCTCCAATGGAAAGTGGAAGGGAGGTGGTGG
TAAGGGTGGCTGGGGAACGGAATTGATCCTGGCGGAAGACCAGAAGGAGT
ATGTTCGAGCCACCGCAGAGCAGAGCCGCAGAATGCGCAAGGAGCACGAC
CTCATGGATGAGGACTACCTCCCGAGCATCCTGACCGGAGAGCGGAACAA
TCACGGTCGAATTCGTGTGGGAGCTGGCAGAAATGTCAACTCGAGGAAGC
GGTAA back to topCoding sequence (CDS) from alignment at ch1:1572294..1573648- >KJC3_000689-T1 ID=KJC3_000689-T1|Name=KJC3_000689-T1|organism=Aspergillus niger KJC3|type=CDS|length=2604bp|location=Sequence derived from alignment at ch1:1572294..1573648- (Aspergillus niger KJC3)
TGCCAAAACGTGCTGCTGCAGATGAACTTGAACTTGCTCTCCACTTCCAC
TCTGCAGCGAATCCGCCATCTGAAGTCTTTCATCAAGCGCTGCCATGCCT
GTTTCTTCACCACCAAGGACATGAACAAGCAATTTTGTCCCCGCTGCGGC
AAGGACACGCTCACTCGTGTCTCCTGCACGACAGACGCGAATGGACAGTT
CAAGATGCACCTGAAAAAGAACATGCAGTGGAACAACCGCGGCAATCGTT
TCAGTGTTCCTAAGCCCGTACACGGCACCTCCAATGGAAAGTGGAAGGGA
GGTGGTGGTAAGGGTGGCTGGGGAACGGAATTGATCCTGGCGGAAGACCA
GAAGGAGTATGTTCGAGCCACCGCAGAGCAGAGCCGCAGAATGCGCAAGG
AGCACGACCTCATGGATGAGGACTACCTCCCGAGCATCCTGACCGGAGAG
CGGAACAATCACGGTCGAATTCGTGTGGGAGCTGGCAGAAATGTCAACTC
GAGGAAGCGGTAAATGACGGACTCGGCATCGCCTGCGAAGCCCGTCCATA
CCATCGTCCTGGACGCCGGTCCCATCTTGAAGAATACCCCGCCGCTATCC
ACGCTGCTCGCACAATGCGAAGAACTCCTCATCACCCCCTCCGTCGTGAG
CGAAATCCGTGACCCTGACGCCCGCCAGCGCGTGGAGACACTATACCTTC
CCTTCTTGAAGCAGCGCACACCATCCCCGAAAAGCGTCAGCGTCTTGAGC
GAATTTGCACGCAAGACTGGTGATCGGGCTGTCCTGAGTAAAACAGATAT
TGAGGTACTGGCGCTTGCATACGAGGTGGAATGCGAGCGCAATGGTGGCG
ACTGGAGACTGAGAAGCGTTCCGGGGCAGAAACAGGTGAACGGGAAGCCT
CCGGTGAAGGAGGAGAAGGCCGAAGAGAAGGGAGAGGAGGCTAAAGCCGA
AGAGGCCAAGGGTGAGACTGAGGGCGAGACCACTCAAAAGGAGGAGAACA
AGGACGAGGTTGCTGAGGTGGATGCCGTTGCAGAAGATCTGAAGAACGCA
AACCTGGAAGACAAGGAGACCAGCACACAGGAGACCGAAGTGCAAAATGC
CCCCGCAGAGGTCGAGGCGGAGGAATCAACTCCTCAGGACGCCGATGCCC
AAGAGGAGGAAGATGATGGCGATGATTCGGATGGTGGTTGGATCACTCCC
TCCAACTTGAAGAAGCGACAGGCCCGCGATGAGGCTAGCTCTGCGGCTGC
GGCGCCAGAGCCCAAGGTGATGCAGGTTGCCACCATGACTACCGATTTTG
CGTGCCAAAACGTGCTGCTGCAGATGAACTTGAACTTGCTCTCCACTTCC
ACTCTGCAGCGAATCCGCCATCTGAAGTCTTTCATCAAGCGCTGCCATGC
CTGTTTCTTCACCACCAAGGACATGAACAAGCAATTTTGTCCCCGCTGCG
GCAAGGACACGCTCACTCGTGTCTCCTGCACGACAGACGCGAATGGACAG
TTCAAGATGCACCTGAAAAAGAACATGCAGTGGAACAACCGCGGCAATCG
TTTCAGTGTTCCTAAGCCCGTACACGGCACCTCCAATGGAAAGTGGAAGG
GAGGTGGTGGTAAGGGTGGCTGGGGAACGGAATTGATCCTGGCGGAAGAC
CAGAAGGAGTATGTTCGAGCCACCGCAGAGCAGAGCCGCAGAATGCGCAA
GGAGCACGACCTCATGGATGAGGACTACCTCCCGAGCATCCTGACCGGAG
AGCGGAACAATCACGGTCGAATTCGTGTGGGAGCTGGCAGAAATGTCAAC
TCGAGGAAGCGGTAAATGACGGACTCGGCATCGCCTGCGAAGCCCGTCCA
TACCATCGTCCTGGACGCCGGTCCCATCTTGAAGAATACCCCGCCGCTAT
CCACGCTGCTCGCACAATGCGAAGAACTCCTCATCACCCCCTCCGTCGTG
AGCGAAATCCGTGACCCTGACGCCCGCCAGCGCGTGGAGACACTATACCT
TCCCTTCTTGAAGCAGCGCACACCATCCCCGAAAAGCGTCAGCGTCTTGA
GCGAATTTGCACGCAAGACTGGTGATCGGGCTGTCCTGAGTAAAACAGAT
ATTGAGGTACTGGCGCTTGCATACGAGGTGGAATGCGAGCGCAATGGTGG
CGACTGGAGACTGAGAAGCGTTCCGGGGCAGAAACAGGTGAACGGGAAGC
CTCCGGTGAAGGAGGAGAAGGCCGAAGAGAAGGGAGAGGAGGCTAAAGCC
GAAGAGGCCAAGGGTGAGACTGAGGGCGAGACCACTCAAAAGGAGGAGAA
CAAGGACGAGGTTGCTGAGGTGGATGCCGTTGCAGAAGATCTGAAGAACG
CAAACCTGGAAGACAAGGAGACCAGCACACAGGAGACCGAAGTGCAAAAT
GCCCCCGCAGAGGTCGAGGCGGAGGAATCAACTCCTCAGGACGCCGATGC
CCAAGAGGAGGAAGATGATGGCGATGATTCGGATGGTGGTTGGATCACTC
CCTCCAACTTGAAGAAGCGACAGGCCCGCGATGAGGCTAGCTCTGCGGCT
GCGGCGCCAGAGCCCAAGGTGATGCAGGTTGCCACCATGACTACCGATTT
TGCG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004521 | endoribonuclease activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0000469 | cleavage involved in rRNA processing |
| GO:0042274 | ribosomal small subunit biogenesis |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG092620U5 |
| DBxref | InterPro:IPR036283 |
| DBxref | InterPro:IPR017117 |
| DBxref | InterPro:IPR033411 |
| DBxref | InterPro:IPR014881 |
| DBxref | PFAM:PF17146 |
| DBxref | PFAM:PF08772 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch1 | supercontig | ch1:1572294..1573648 - |
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