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KJC3_000730-T2, KJC3_000730-T2 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_000730-T2
Unique NameKJC3_000730-T2
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch1:1689746..1692221-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_000730-T2 ID=KJC3_000730-T2|Name=KJC3_000730-T2|organism=Aspergillus niger KJC3|type=mRNA|length=2476bp|location=Sequence derived from alignment at ch1:1689746..1692221- (Aspergillus niger KJC3)
AAAATTAATGCCTCAGGCTCATAATCACCATGACATTTTGCAGATCGCGC
GCTTCCTCTCCTCCGATTGCCGAAAAAAAGTATCCCCCCATCTTGATCTT
CGTTGCTCCGGCTTCTCTATCTCGCGCTTGTCGTTCCCTTCTGGCACTTT
AACCTCATGCGATTCCCCCGGTGACCCTTCCCCTCCTTCTAGAGAATTGA
AGCTTTTCGCATTCTCTAGAAGCCATTCATCATGACTTCTCAAGTATGCG
ATCAATTCCCCCTCCCCTCTCTTCCCGCCCCTCATCTGTACCACTGCTAA
TGATCCGAGTAACAGTACGCGGCGGAGCTATGTGCGCTCTTGGTCGAGGA
TAATTTCGGGGAGCTTTTTGCGGTATGCTCGCTTTTGCTCACTTGGTAAC
CCGCTGCATTCATGAAGAACCATATAGTCGGTGTCAATTTGCGGGCCACA
TCGAGCAACAGGCTGACCGTTATCCGTCTTCGCCAGCGTATCTTCTCAAC
CCTCCAGCGCTATGACCGGCTCTCATTACCTCGTTTAAAATTCTACTCGC
GCCTCTCCGATCGTCAACTTCGTCATGGTCTATCTGCCATGATTCAACAC
CACCTGGTGTACCATTACACATCCTACGACGATGGCGTTACCTATTACGA
ACCAAACCTGCAGGCTGCGTACTATCTTGTTCGCTCCGGCAAGATCCTGG
AGTTCATCGAAGAACGGCTTGGGAAGTATGCGGCTACCCTTATGGAGACC
ATTATGTTTCTCGGACACGCACAAGTCGGCTACCTCGAGACCCTCCCTGA
ACTGCAACCCGCACCACCTAAAGCGAATGGCGTGAAACAGGAAGCCGAAG
GTGGAGAGTCCGAAGAACAAATGAATGGCGATGATGTGCACACCTCCGAC
CAGCCGGCGCTTCTACATCCTACTCTGAAAGCACTGGCTTCCCACGGTTA
TATCTTTCGTGTGCGCGATGCGCAATTCCAAAGCTACGCTGATAACGCCC
TGGATGCGGAACGTGCCATCAAGTCGCGACCTGATGTCAAGCAGCTAAAG
GGTAAGAAGCTGGACGAAACAGTCCTGGAAGGGACTGTTACTCTTTTGAA
AGAAAGACTTGATGGGGATCTTACCCGCGGACTCATGCATAACGGGTTAC
CCCGGGGTGCGAAGAGAAGGCATGGTACCGGGTCTGCAGATGCTACAAAC
AAAAAAGCACGAATGGACTACGTCGATGCTGATGAGGATGAGGATGAGGA
GGAGAACGAATGGTCGGATGACGAGATGGGTGGGGATACCACTCCCATGG
AGGTGAGACTCTGCGTTATTCTCCTTTATATGTCTGTTTGACTAATGGGT
TTGTTCAATCTAGTTGGCAATTGTTGTCCGCGTGAACTATGAGAAACTCG
ACGTTGCTCTTCGGAATCGACGGTTTTTGGATCTTGCGGAGATGAACTCA
TCGCCAGTTACCGCACAGGTCTACGAGGGCCTCCTACGACGCATAGAATA
CCAAACCAAACAATGCCGAGATAGTGCTGAGATACCCCGCGAAGGAGAGG
AAGGCGAGCAATACTCCGTCCCCATCGCTCTTAGTGCGGTGACAGAAGAA
GTCGACCCGCAGTTGGACCTTGCAGGCTCCATAGGTCCCATGGAGATATC
ACAGGCCATCAACAAACGTGGGAAACGGCCTCTGGAGGACAGTGTCAATG
GAACCGACCGTGAAGGATCAGAAGCCCCCAGCCGCACCTACGAGGTAGAC
CAACACCTTTCTCTGCTCTCGCAGCCCCCCTACAACCTCACATCCAAGCG
CGTACTTTCCGGACTCATTACCTGGACCGTCGAATTCCGACACCTAGCGC
GCAAGCTCCGCCACCTAGAACTGGAACGAATGATTGAAGCCCGCTATGGC
GACGTCGCTTTACGAGTGATCCGCGTACTCCACGCCAAGGGCAAGCTCGA
CGAGAAGCGCCTACAGGAAATCAGTCTCCTCCCCTTCAAAGACCTGCGTC
AAGTCCTCGCTAGCATGCAGTCCGGTGGGTTTGTGGATCTGCAAGAAGTC
CCCCGAGACGCACAGCGACAGCCCTCTCGTACGATCTACCTCTGGTACTA
TGATCCGGACCGCATCCGGAGCAGCATTCTGGAGGACACGTACAAGGCTA
TGTCTAGGTGTATGCAACGCCTGCGGTTTGAGCGGAACCGACTCAAGGAG
TTCCTGGAGAAGACGGAGCGGAGTGATGTCAAGGGCAATGAGGAGCGCTA
TCTGTCTCAGGCTGAGTTGACCCTGTTGGAGCAGTGGAAGGCTAAAGAGG
CCTTGTTGCTTGGGGAGGTGGCTCGGTTGGATGAGATGGTTGCGGTCATG
CGAGACTACTGATGGGAATGATTGATCGCATTCCTTTTACTCTTCTATTC
ATGGAATATGATGTTTGAAAAGATTCCACATATCAATACTGTATGTCTCA
GACATGCAAATTATATACGCCTAGAT
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Coding sequence (CDS) from alignment at ch1:1689746..1692221-

>KJC3_000730-T2 ID=KJC3_000730-T2|Name=KJC3_000730-T2|organism=Aspergillus niger KJC3|type=CDS|length=3426bp|location=Sequence derived from alignment at ch1:1689746..1692221- (Aspergillus niger KJC3)
TTGGCAATTGTTGTCCGCGTGAACTATGAGAAACTCGACGTTGCTCTTCG
GAATCGACGGTTTTTGGATCTTGCGGAGATGAACTCATCGCCAGTTACCG
CACAGGTCTACGAGGGCCTCCTACGACGCATAGAATACCAAACCAAACAA
TGCCGAGATAGTGCTGAGATACCCCGCGAAGGAGAGGAAGGCGAGCAATA
CTCCGTCCCCATCGCTCTTAGTGCGGTGACAGAAGAAGTCGACCCGCAGT
TGGACCTTGCAGGCTCCATAGGTCCCATGGAGATATCACAGGCCATCAAC
AAACGTGGGAAACGGCCTCTGGAGGACAGTGTCAATGGAACCGACCGTGA
AGGATCAGAAGCCCCCAGCCGCACCTACGAGGTAGACCAACACCTTTCTC
TGCTCTCGCAGCCCCCCTACAACCTCACATCCAAGCGCGTACTTTCCGGA
CTCATTACCTGGACCGTCGAATTCCGACACCTAGCGCGCAAGCTCCGCCA
CCTAGAACTGGAACGAATGATTGAAGCCCGCTATGGCGACGTCGCTTTAC
GAGTGATCCGCGTACTCCACGCCAAGGGCAAGCTCGACGAGAAGCGCCTA
CAGGAAATCAGTCTCCTCCCCTTCAAAGACCTGCGTCAAGTCCTCGCTAG
CATGCAGTCCGGTGGGTTTGTGGATCTGCAAGAAGTCCCCCGAGACGCAC
AGCGACAGCCCTCTCGTACGATCTACCTCTGGTACTATGATCCGGACCGC
ATCCGGAGCAGCATTCTGGAGGACACGTACAAGGCTATGTCTAGGTGTAT
GCAACGCCTGCGGTTTGAGCGGAACCGACTCAAGGAGTTCCTGGAGAAGA
CGGAGCGGAGTGATGTCAAGGGCAATGAGGAGCGCTATCTGTCTCAGGCT
GAGTTGACCCTGTTGGAGCAGTGGAAGGCTAAAGAGGCCTTGTTGCTTGG
GGAGGTGGCTCGGTTGGATGAGATGGTTGCGGTCATGCGAGACTACTGAA
TGATTCAACACCACCTGGTGTACCATTACACATCCTACGACGATGGCGTT
ACCTATTACGAACCAAACCTGCAGGCTGCGTACTATCTTGTTCGCTCCGG
CAAGATCCTGGAGTTCATCGAAGAACGGCTTGGGAAGTATGCGGCTACCC
TTATGGAGACCATTATGTTTCTCGGACACGCACAAGTCGGCTACCTCGAG
ACCCTCCCTGAACTGCAACCCGCACCACCTAAAGCGAATGGCGTGAAACA
GGAAGCCGAAGGTGGAGAGTCCGAAGAACAAATGAATGGCGATGATGTGC
ACACCTCCGACCAGCCGGCGCTTCTACATCCTACTCTGAAAGCACTGGCT
TCCCACGGTTATATCTTTCGTGTGCGCGATGCGCAATTCCAAAGCTACGC
TGATAACGCCCTGGATGCGGAACGTGCCATCAAGTCGCGACCTGATGTCA
AGCAGCTAAAGGGTAAGAAGCTGGACGAAACAGTCCTGGAAGGGACTGTT
ACTCTTTTGAAAGAAAGACTTGATGGGGATCTTACCCGCGGACTCATGCA
TAACGGGTTACCCCGGGGTGCGAAGAGAAGGCATGGTACCGGGTCTGCAG
ATGCTACAAACAAAAAAGCACGAATGGACTACGTCGATGCTGATGAGGAT
GAGGATGAGGAGGAGAACGAATGGTCGGATGACGAGATGGGTGGGGATAC
CACTCCCATGGAGTTGGCAATTGTTGTCCGCGTGAACTATGAGAAACTCG
ACGTTGCTCTTCGGAATCGACGGTTTTTGGATCTTGCGGAGATGAACTCA
TCGCCAGTTACCGCACAGGTCTACGAGGGCCTCCTACGACGCATAGAATA
CCAAACCAAACAATGCCGAGATAGTGCTGAGATACCCCGCGAAGGAGAGG
AAGGCGAGCAATACTCCGTCCCCATCGCTCTTAGTGCGGTGACAGAAGAA
GTCGACCCGCAGTTGGACCTTGCAGGCTCCATAGGTCCCATGGAGATATC
ACAGGCCATCAACAAACGTGGGAAACGGCCTCTGGAGGACAGTGTCAATG
GAACCGACCGTGAAGGATCAGAAGCCCCCAGCCGCACCTACGAGGTAGAC
CAACACCTTTCTCTGCTCTCGCAGCCCCCCTACAACCTCACATCCAAGCG
CGTACTTTCCGGACTCATTACCTGGACCGTCGAATTCCGACACCTAGCGC
GCAAGCTCCGCCACCTAGAACTGGAACGAATGATTGAAGCCCGCTATGGC
GACGTCGCTTTACGAGTGATCCGCGTACTCCACGCCAAGGGCAAGCTCGA
CGAGAAGCGCCTACAGGAAATCAGTCTCCTCCCCTTCAAAGACCTGCGTC
AAGTCCTCGCTAGCATGCAGTCCGGTGGGTTTGTGGATCTGCAAGAAGTC
CCCCGAGACGCACAGCGACAGCCCTCTCGTACGATCTACCTCTGGTACTA
TGATCCGGACCGCATCCGGAGCAGCATTCTGGAGGACACGTACAAGGCTA
TGTCTAGGTGTATGCAACGCCTGCGGTTTGAGCGGAACCGACTCAAGGAG
TTCCTGGAGAAGACGGAGCGGAGTGATGTCAAGGGCAATGAGGAGCGCTA
TCTGTCTCAGGCTGAGTTGACCCTGTTGGAGCAGTGGAAGGCTAAAGAGG
CCTTGTTGCTTGGGGAGGTGGCTCGGTTGGATGAGATGGTTGCGGTCATG
CGAGACTACTGAATGATTCAACACCACCTGGTGTACCATTACACATCCTA
CGACGATGGCGTTACCTATTACGAACCAAACCTGCAGGCTGCGTACTATC
TTGTTCGCTCCGGCAAGATCCTGGAGTTCATCGAAGAACGGCTTGGGAAG
TATGCGGCTACCCTTATGGAGACCATTATGTTTCTCGGACACGCACAAGT
CGGCTACCTCGAGACCCTCCCTGAACTGCAACCCGCACCACCTAAAGCGA
ATGGCGTGAAACAGGAAGCCGAAGGTGGAGAGTCCGAAGAACAAATGAAT
GGCGATGATGTGCACACCTCCGACCAGCCGGCGCTTCTACATCCTACTCT
GAAAGCACTGGCTTCCCACGGTTATATCTTTCGTGTGCGCGATGCGCAAT
TCCAAAGCTACGCTGATAACGCCCTGGATGCGGAACGTGCCATCAAGTCG
CGACCTGATGTCAAGCAGCTAAAGGGTAAGAAGCTGGACGAAACAGTCCT
GGAAGGGACTGTTACTCTTTTGAAAGAAAGACTTGATGGGGATCTTACCC
GCGGACTCATGCATAACGGGTTACCCCGGGGTGCGAAGAGAAGGCATGGT
ACCGGGTCTGCAGATGCTACAAACAAAAAAGCACGAATGGACTACGTCGA
TGCTGATGAGGATGAGGATGAGGAGGAGAACGAATGGTCGGATGACGAGA
TGGGTGGGGATACCACTCCCATGGAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006351transcription, DNA-templated
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RPC82_1KJC3_000730Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000730-T2KJC3_000730-T2-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000730-T2.cdsKJC3_000730-T2.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000730-T2.utr3p1KJC3_000730-T2.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000730-T2.exon4KJC3_000730-T2.exon4Aspergillus niger KJC3exon
KJC3_000730-T2.exon3KJC3_000730-T2.exon3Aspergillus niger KJC3exon
KJC3_000730-T2.exon2KJC3_000730-T2.exon2Aspergillus niger KJC3exon
KJC3_000730-T2.exon1KJC3_000730-T2.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000730-T2.utr5p3KJC3_000730-T2.utr5p3Aspergillus niger KJC3five_prime_UTR
KJC3_000730-T2.utr5p2KJC3_000730-T2.utr5p2Aspergillus niger KJC3five_prime_UTR
KJC3_000730-T2.utr5p1KJC3_000730-T2.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
NoteBUSCO:EOG092610QT
DBxrefInterPro:IPR036390
DBxrefInterPro:IPR008806
DBxrefInterPro:IPR036388
DBxrefPFAM:PF05645
Product variant 2
ProductRNA polymerase III subunit C82
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch1supercontigch1:1689746..1692221 -
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