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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch1:2116238..2118325+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_000850-T1 ID=KJC3_000850-T1|Name=KJC3_000850-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2088bp|location=Sequence derived from alignment at ch1:2116238..2118325+ (Aspergillus niger KJC3)
GCTCAGTGTGACCCTCGTCGCGTCCATTCCCCCCGCAATTCACGACACGC
CGTTTTATATATTCAATTTAACTTATCACTCTATATAGGCCATTATATAC
CGTTCTCACAATGCCCAAACGAAAGGCTGCTGCTGCGCTATCCGGTTCAG
CCGGCGATGAGGATCCCATGCAAGCTAATGACTCCGGAAGGGAGCGCCCT
ACGAAGAAGCAGAGAGGAAGGCCTCGGTCGAAATCTGCAGAGATGAAACC
TCAAATGCAGTCCGGGCGCGATTCAAGTACGGCAGCTCCGCAAGCCTCCG
AGGCACCTACGAGAAAGAGCGGCCGCAGGGGCAGACCCAAGGGCAGCAGA
AGCTCGGTGCAAGCAACGCAAGACATCTCAGAAGAGCAGGCCGAGGTCAG
GGAATCGGAACATGAGGCAGACGATCAGGAGGCAGAAGGCGCCGCTGCCT
CAAACGATGAAGCAGACGGTGCGCAGGACGTTGCGAAACCAACAAAAGCC
ACCAAGTCCACGAGAGCTGCCCCGCGTGGTCGGAAGAATGCCACCATAAG
GAACTCAGTTCAGACAGATGGTGGATTCGAGTACACTCCATCAACCGGCC
GACAAAGCAAATCGCTGGACAAGCCTGAGGATAGACCAGAACCACCCAAG
AGACAAAGACGGAAACCCGAAGTGGAGGAGAACAACGATGCACAAGATAA
TGAAAGCACTGCCCCGGATGTCGTGGATGAGACTTTGCTTCAAGATGCGC
CGATGGAAGCCCGGTCCGTGTCACGCTCTCCCACAAAACGCCGACAATCC
CAGAAAGGCATATATAGCTCCCCTTCAAAGTCAAGGCTTGGAGGAACGAC
CGAGGCCAATGTGGAGCCCGAGTTGCGTCGTCGGATTGGTGAATTGACGA
AGAAATGTGATACTCTTGAGAATCGCTATCGGAATCTTAAGGAGATTGGC
ATTGTTGAAGCGAACTCGAACATGGAGAAACTACGAAAACAGTGCGAGTC
GATGACAAATGGTGAGTGGTGCTGTGACTATATTTCCTGAAATCACCAAT
ACTGAATGTTGCTAGCTTCGAACAACCTGATCGCTTCTTTGAAGGCAGAG
TTAGAGGCCCAGAAGGCACTTGGTCAGCAAAGTCGGTCGCTCCAACGACA
GCTGAAGGAACGGGATGCCGAAGTAGCTCAGTTGAAGTCGCAAGCTGAGG
AGGCGACGGGTCAGCTCTCCTCGGCACAGACTGAGGTTAAGGCTTTGCAG
ACAAAGCTTGCCGCGGCTCGTAATACTGCCGCAAGTCTTGAGAATGCGGC
CAGCAAGATTCCTGGAAGCGCAATCAAGAGCGGTGCCAATCGTGCGAATG
CTGCTGCGGTCACTGCCGAAGCCGCGCAGGCAGCTCAATTTGCGCAACTC
AAGGAAGATTTGTACACTGATCTCACGGGCCTAATTATCCGTGATGTCAA
AAAGCGGCCGTCTGACAATCTATATGACTGTATCCAGACCGGTAGCAATG
GCAGTAAGTTCTTCTTGCCCCGTGGCGGTTCGATACAAGTGCCTAACAGA
TTGCAGCCCTCCATTTCAAGCTCGTCGTGCCCCATGTATCAACAGCCAAC
TTTGAAACTGCCGAGTTTCAATATATCCCACTGTTGGATGAGAACAGAGA
CCGTGAGCTGGTTGATGTTCTTCCCGAGTACTTGACTGTCGACATTACAT
TTGTTCGCCAACAAGCATCGAAGTTCTACACCAGAGTGATCGATGCGCTG
ACCAAGCGGCGGAGTACTGCTGCCATCTGATCGCTCAGAAGGTCATTCGT
GTACAAACCTAAGTTTTATATTATCGTGGTGATTGGGCTTTCTTTGTTGA
AAACTTTGATTATCTGGGTTGAGTCTTTTTGGAGATATCCCTTATCGCAT
AGCAGACGCCGGGTCATTGCGTTAGGGCGCTTTCTGGAGCGATTCCATGC
TTTTTCTTATGTTATTCCCTTTTTTTTAATTTTCTATATCATTCGATTTG
GTGGGAATAACATGGTATTTATCCAGTTATCAGATAATGGTTCCCAGTGC
CAGAAGATACTATCAAGTCAACTCAGGCACAAGATCTA back to topCoding sequence (CDS) from alignment at ch1:2116238..2118325+ >KJC3_000850-T1 ID=KJC3_000850-T1|Name=KJC3_000850-T1|organism=Aspergillus niger KJC3|type=CDS|length=4689bp|location=Sequence derived from alignment at ch1:2116238..2118325+ (Aspergillus niger KJC3)
ATGCCCAAACGAAAGGCTGCTGCTGCGCTATCCGGTTCAGCCGGCGATGA
GGATCCCATGCAAGCTAATGACTCCGGAAGGGAGCGCCCTACGAAGAAGC
AGAGAGGAAGGCCTCGGTCGAAATCTGCAGAGATGAAACCTCAAATGCAG
TCCGGGCGCGATTCAAGTACGGCAGCTCCGCAAGCCTCCGAGGCACCTAC
GAGAAAGAGCGGCCGCAGGGGCAGACCCAAGGGCAGCAGAAGCTCGGTGC
AAGCAACGCAAGACATCTCAGAAGAGCAGGCCGAGGTCAGGGAATCGGAA
CATGAGGCAGACGATCAGGAGGCAGAAGGCGCCGCTGCCTCAAACGATGA
AGCAGACGGTGCGCAGGACGTTGCGAAACCAACAAAAGCCACCAAGTCCA
CGAGAGCTGCCCCGCGTGGTCGGAAGAATGCCACCATAAGGAACTCAGTT
CAGACAGATGGTGGATTCGAGTACACTCCATCAACCGGCCGACAAAGCAA
ATCGCTGGACAAGCCTGAGGATAGACCAGAACCACCCAAGAGACAAAGAC
GGAAACCCGAAGTGGAGGAGAACAACGATGCACAAGATAATGAAAGCACT
GCCCCGGATGTCGTGGATGAGACTTTGCTTCAAGATGCGCCGATGGAAGC
CCGGTCCGTGTCACGCTCTCCCACAAAACGCCGACAATCCCAGAAAGGCA
TATATAGCTCCCCTTCAAAGTCAAGGCTTGGAGGAACGACCGAGGCCAAT
GTGGAGCCCGAGTTGCGTCGTCGGATTGGTGAATTGACGAAGAAATGTGA
TACTCTTGAGAATCGCTATCGGAATCTTAAGGAGATTGGCATTGTTGAAG
CGAACTCGAACATGGAGAAACTACGAAAACAGTGCGAGTCGATGACAAAT
GCTTCGAACAACCTGATCGCTTCTTTGAAGGCAGAGTTAGAGGCCCAGAA
GGCACTTGGTCAGCAAAGTCGGTCGCTCCAACGACAGCTGAAGGAACGGG
ATGCCGAAGTAGCTCAGTTGAAGTCGCAAGCTGAGGAGGCGACGGGTCAG
CTCTCCTCGGCACAGACTGAGGTTAAGGCTTTGCAGACAAAGCTTGCCGC
GGCTCGTAATACTGCCGCAAGTCTTGAGAATGCGGCCAGCAAGATTCCTG
GAAGCGCAATCAAGAGCGGTGCCAATCGTGCGAATGCTGCTGCGGTCACT
GCCGAAGCCGCGCAGGCAGCTCAATTTGCGCAACTCAAGGAAGATTTGTA
CACTGATCTCACGGGCCTAATTATCCGTGATGTCAAAAAGCGGCCGTCTG
ACAATCTATATGACTGTATCCAGACCGGTAGCAATGGCACCCTCCATTTC
AAGCTCGTCGTGCCCCATGTATCAACAGCCAACTTTGAAACTGCCGAGTT
TCAATATATCCCACTGTTGGATGAGAACAGAGACCGTGAGCTGGTTGATG
TTCTTCCCGAGTACTTGACTGTCGACATTACATTTGTTCGCCAACAAGCA
TCGAAGTTCTACACCAGAGTGATCGATGCGCTGACCAAGCGGCGGAGTAC
TGCTGCCATCTGAATGCCCAAACGAAAGGCTGCTGCTGCGCTATCCGGTT
CAGCCGGCGATGAGGATCCCATGCAAGCTAATGACTCCGGAAGGGAGCGC
CCTACGAAGAAGCAGAGAGGAAGGCCTCGGTCGAAATCTGCAGAGATGAA
ACCTCAAATGCAGTCCGGGCGCGATTCAAGTACGGCAGCTCCGCAAGCCT
CCGAGGCACCTACGAGAAAGAGCGGCCGCAGGGGCAGACCCAAGGGCAGC
AGAAGCTCGGTGCAAGCAACGCAAGACATCTCAGAAGAGCAGGCCGAGGT
CAGGGAATCGGAACATGAGGCAGACGATCAGGAGGCAGAAGGCGCCGCTG
CCTCAAACGATGAAGCAGACGGTGCGCAGGACGTTGCGAAACCAACAAAA
GCCACCAAGTCCACGAGAGCTGCCCCGCGTGGTCGGAAGAATGCCACCAT
AAGGAACTCAGTTCAGACAGATGGTGGATTCGAGTACACTCCATCAACCG
GCCGACAAAGCAAATCGCTGGACAAGCCTGAGGATAGACCAGAACCACCC
AAGAGACAAAGACGGAAACCCGAAGTGGAGGAGAACAACGATGCACAAGA
TAATGAAAGCACTGCCCCGGATGTCGTGGATGAGACTTTGCTTCAAGATG
CGCCGATGGAAGCCCGGTCCGTGTCACGCTCTCCCACAAAACGCCGACAA
TCCCAGAAAGGCATATATAGCTCCCCTTCAAAGTCAAGGCTTGGAGGAAC
GACCGAGGCCAATGTGGAGCCCGAGTTGCGTCGTCGGATTGGTGAATTGA
CGAAGAAATGTGATACTCTTGAGAATCGCTATCGGAATCTTAAGGAGATT
GGCATTGTTGAAGCGAACTCGAACATGGAGAAACTACGAAAACAGTGCGA
GTCGATGACAAATGCTTCGAACAACCTGATCGCTTCTTTGAAGGCAGAGT
TAGAGGCCCAGAAGGCACTTGGTCAGCAAAGTCGGTCGCTCCAACGACAG
CTGAAGGAACGGGATGCCGAAGTAGCTCAGTTGAAGTCGCAAGCTGAGGA
GGCGACGGGTCAGCTCTCCTCGGCACAGACTGAGGTTAAGGCTTTGCAGA
CAAAGCTTGCCGCGGCTCGTAATACTGCCGCAAGTCTTGAGAATGCGGCC
AGCAAGATTCCTGGAAGCGCAATCAAGAGCGGTGCCAATCGTGCGAATGC
TGCTGCGGTCACTGCCGAAGCCGCGCAGGCAGCTCAATTTGCGCAACTCA
AGGAAGATTTGTACACTGATCTCACGGGCCTAATTATCCGTGATGTCAAA
AAGCGGCCGTCTGACAATCTATATGACTGTATCCAGACCGGTAGCAATGG
CACCCTCCATTTCAAGCTCGTCGTGCCCCATGTATCAACAGCCAACTTTG
AAACTGCCGAGTTTCAATATATCCCACTGTTGGATGAGAACAGAGACCGT
GAGCTGGTTGATGTTCTTCCCGAGTACTTGACTGTCGACATTACATTTGT
TCGCCAACAAGCATCGAAGTTCTACACCAGAGTGATCGATGCGCTGACCA
AGCGGCGGAGTACTGCTGCCATCTGAATGCCCAAACGAAAGGCTGCTGCT
GCGCTATCCGGTTCAGCCGGCGATGAGGATCCCATGCAAGCTAATGACTC
CGGAAGGGAGCGCCCTACGAAGAAGCAGAGAGGAAGGCCTCGGTCGAAAT
CTGCAGAGATGAAACCTCAAATGCAGTCCGGGCGCGATTCAAGTACGGCA
GCTCCGCAAGCCTCCGAGGCACCTACGAGAAAGAGCGGCCGCAGGGGCAG
ACCCAAGGGCAGCAGAAGCTCGGTGCAAGCAACGCAAGACATCTCAGAAG
AGCAGGCCGAGGTCAGGGAATCGGAACATGAGGCAGACGATCAGGAGGCA
GAAGGCGCCGCTGCCTCAAACGATGAAGCAGACGGTGCGCAGGACGTTGC
GAAACCAACAAAAGCCACCAAGTCCACGAGAGCTGCCCCGCGTGGTCGGA
AGAATGCCACCATAAGGAACTCAGTTCAGACAGATGGTGGATTCGAGTAC
ACTCCATCAACCGGCCGACAAAGCAAATCGCTGGACAAGCCTGAGGATAG
ACCAGAACCACCCAAGAGACAAAGACGGAAACCCGAAGTGGAGGAGAACA
ACGATGCACAAGATAATGAAAGCACTGCCCCGGATGTCGTGGATGAGACT
TTGCTTCAAGATGCGCCGATGGAAGCCCGGTCCGTGTCACGCTCTCCCAC
AAAACGCCGACAATCCCAGAAAGGCATATATAGCTCCCCTTCAAAGTCAA
GGCTTGGAGGAACGACCGAGGCCAATGTGGAGCCCGAGTTGCGTCGTCGG
ATTGGTGAATTGACGAAGAAATGTGATACTCTTGAGAATCGCTATCGGAA
TCTTAAGGAGATTGGCATTGTTGAAGCGAACTCGAACATGGAGAAACTAC
GAAAACAGTGCGAGTCGATGACAAATGCTTCGAACAACCTGATCGCTTCT
TTGAAGGCAGAGTTAGAGGCCCAGAAGGCACTTGGTCAGCAAAGTCGGTC
GCTCCAACGACAGCTGAAGGAACGGGATGCCGAAGTAGCTCAGTTGAAGT
CGCAAGCTGAGGAGGCGACGGGTCAGCTCTCCTCGGCACAGACTGAGGTT
AAGGCTTTGCAGACAAAGCTTGCCGCGGCTCGTAATACTGCCGCAAGTCT
TGAGAATGCGGCCAGCAAGATTCCTGGAAGCGCAATCAAGAGCGGTGCCA
ATCGTGCGAATGCTGCTGCGGTCACTGCCGAAGCCGCGCAGGCAGCTCAA
TTTGCGCAACTCAAGGAAGATTTGTACACTGATCTCACGGGCCTAATTAT
CCGTGATGTCAAAAAGCGGCCGTCTGACAATCTATATGACTGTATCCAGA
CCGGTAGCAATGGCACCCTCCATTTCAAGCTCGTCGTGCCCCATGTATCA
ACAGCCAACTTTGAAACTGCCGAGTTTCAATATATCCCACTGTTGGATGA
GAACAGAGACCGTGAGCTGGTTGATGTTCTTCCCGAGTACTTGACTGTCG
ACATTACATTTGTTCGCCAACAAGCATCGAAGTTCTACACCAGAGTGATC
GATGCGCTGACCAAGCGGCGGAGTACTGCTGCCATCTGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_000850-T1.utr5p1 | KJC3_000850-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_000850-T1.utr3p1 | KJC3_000850-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR038608 |
| DBxref | InterPro:IPR020981 |
| DBxref | PFAM:PF12539 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch1 | supercontig | ch1:2116238..2118325 + |
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