You are here

Home

KJC3_000978-T1, KJC3_000978-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_000978-T1
Unique NameKJC3_000978-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch1:2471975..2473253-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_000978-T1 ID=KJC3_000978-T1|Name=KJC3_000978-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1279bp|location=Sequence derived from alignment at ch1:2471975..2473253- (Aspergillus niger KJC3)
ATCTCATCCCATCGCTTTTAACTCACACACAACCACCATCCACCCCTCAA
TTGGTATCCCTTTATTTTACAAAATCAACACACATACAAATACACAAAAA
TGCCCCCCAAACCAGCCCCCTACCTCCCCCTACTCTCATCCCACCTAACC
TCCTCCCCCACCTCCACCTCCATCTCCCTCACCACCCTCTCAACCCACCC
CATCACCCGCACCCCGCAGCCTCGTTCCCGCACCGTCGAATTCCGCGGCT
TCTTCCCAACCTTAAACCTGCACTCATCCGCCGTCCAGTCCCTCAAGGAT
CAGCACATAGGCCTGAACCCCGATATCTACGAGTCGGAGATGATTGCCCT
CACGACGGATAAGCGGATGGAGAAGGTGCAGGAGATGGAGAGCTCGGGGG
GTGTAGTTGAGGCGGTGTTTTGGTTGAAGGAGGTGGGGAATCAGTGGAGG
GTTAGGGGGAGGGGGGTTATCATTGGAGGCGATCCGGAGGATCAGGGGGA
GAAGGAGGGAAGGGGGTTTATTGAGAAGGGATTGAGGAGGAAGGAGGATG
GAGGTAATGGGGAGGGTGATGGGGAGTGGAGCTGGGAAAGGCAGGTCGAT
ATGTATTTTGCGAATCATTCGCCGGGGATGAGAGGTCAGTGTTTCCTCCT
TCATGTTTTGGGGATGAGATGGGGATGGTTGCTAATGGGGATTGTAGGGA
CATTTAAGAATCCACCTCCTGGTACGCTGCGGAGTCAGGATCCCGGGAAC
CCCGAGCTCAAGCTGGGTCAGAAGGTGGAGGACCTCAAGGATAAGGTTGC
GAGGGAGAATTTCAGGGTCGTGGTGATTCGACCTGAGGAGGTCGAGAGGT
TGGATGTGAATGATCCTTCGAATCCGATTCGGACGAGGTGGACGGCTGTG
AGGGATGGGGAGGAGTGGGAGGAGGTGGATTTGTGGCCTTGATTGATACA
TTTTTTTTTTTCATTATTGATGGGGATAGGTGCTATTTTTGTTAGGGTGA
TAAAGGTGATGTTATGTGTTTCATTATTTTGTGTAGATTATATGATTGTA
TCTTTGTATGCTGTGTCGGACAATGCGACTAAAAGGGAATATGTGATACT
GGCTCGTCTTTGAATGCAGCGGTGAGATGAACCCGAGGTTCATTATCTTG
TTTGTCACGGCTTTGTTTCTTGTCCGGATAAAGCGTTTTGTGTGGACATT
GCCGATGAGTTGTATTCTGAAACACATAATTAGCATAAAGAACACCTCCA
TCGGGACAACATCGTTGTGTTTCATGCCG
back to top

Coding sequence (CDS) from alignment at ch1:2471975..2473253-

>KJC3_000978-T1 ID=KJC3_000978-T1|Name=KJC3_000978-T1|organism=Aspergillus niger KJC3|type=CDS|length=1560bp|location=Sequence derived from alignment at ch1:2471975..2473253- (Aspergillus niger KJC3)
GGACATTTAAGAATCCACCTCCTGGTACGCTGCGGAGTCAGGATCCCGGG
AACCCCGAGCTCAAGCTGGGTCAGAAGGTGGAGGACCTCAAGGATAAGGT
TGCGAGGGAGAATTTCAGGGTCGTGGTGATTCGACCTGAGGAGGTCGAGA
GGTTGGATGTGAATGATCCTTCGAATCCGATTCGGACGAGGTGGACGGCT
GTGAGGGATGGGGAGGAGTGGGAGGAGGTGGATTTGTGGCCTTGAATGCC
CCCCAAACCAGCCCCCTACCTCCCCCTACTCTCATCCCACCTAACCTCCT
CCCCCACCTCCACCTCCATCTCCCTCACCACCCTCTCAACCCACCCCATC
ACCCGCACCCCGCAGCCTCGTTCCCGCACCGTCGAATTCCGCGGCTTCTT
CCCAACCTTAAACCTGCACTCATCCGCCGTCCAGTCCCTCAAGGATCAGC
ACATAGGCCTGAACCCCGATATCTACGAGTCGGAGATGATTGCCCTCACG
ACGGATAAGCGGATGGAGAAGGTGCAGGAGATGGAGAGCTCGGGGGGTGT
AGTTGAGGCGGTGTTTTGGTTGAAGGAGGTGGGGAATCAGTGGAGGGTTA
GGGGGAGGGGGGTTATCATTGGAGGCGATCCGGAGGATCAGGGGGAGAAG
GAGGGAAGGGGGTTTATTGAGAAGGGATTGAGGAGGAAGGAGGATGGAGG
TAATGGGGAGGGTGATGGGGAGTGGAGCTGGGAAAGGCAGGTCGATATGT
ATTTTGCGAATCATTCGCCGGGGATGAGAGGGACATTTAAGAATCCACCT
CCTGGTACGCTGCGGAGTCAGGATCCCGGGAACCCCGAGCTCAAGCTGGG
TCAGAAGGTGGAGGACCTCAAGGATAAGGTTGCGAGGGAGAATTTCAGGG
TCGTGGTGATTCGACCTGAGGAGGTCGAGAGGTTGGATGTGAATGATCCT
TCGAATCCGATTCGGACGAGGTGGACGGCTGTGAGGGATGGGGAGGAGTG
GGAGGAGGTGGATTTGTGGCCTTGAATGCCCCCCAAACCAGCCCCCTACC
TCCCCCTACTCTCATCCCACCTAACCTCCTCCCCCACCTCCACCTCCATC
TCCCTCACCACCCTCTCAACCCACCCCATCACCCGCACCCCGCAGCCTCG
TTCCCGCACCGTCGAATTCCGCGGCTTCTTCCCAACCTTAAACCTGCACT
CATCCGCCGTCCAGTCCCTCAAGGATCAGCACATAGGCCTGAACCCCGAT
ATCTACGAGTCGGAGATGATTGCCCTCACGACGGATAAGCGGATGGAGAA
GGTGCAGGAGATGGAGAGCTCGGGGGGTGTAGTTGAGGCGGTGTTTTGGT
TGAAGGAGGTGGGGAATCAGTGGAGGGTTAGGGGGAGGGGGGTTATCATT
GGAGGCGATCCGGAGGATCAGGGGGAGAAGGAGGGAAGGGGGTTTATTGA
GAAGGGATTGAGGAGGAAGGAGGATGGAGGTAATGGGGAGGGTGATGGGG
AGTGGAGCTGGGAAAGGCAGGTCGATATGTATTTTGCGAATCATTCGCCG
GGGATGAGAG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0010181FMN binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_000978KJC3_000978Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000978-T1KJC3_000978-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000978-T1.cdsKJC3_000978-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000978-T1.utr3p1KJC3_000978-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000978-T1.exon2KJC3_000978-T1.exon2Aspergillus niger KJC3exon
KJC3_000978-T1.exon1KJC3_000978-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000978-T1.utr5p1KJC3_000978-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR012349
DBxrefInterPro:IPR024624
DBxrefPFAM:PF12766
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch1supercontigch1:2471975..2473253 -
Powered by Drupal