You are here

Home

KJC3_001070-T1, KJC3_001070-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_001070-T1
Unique NameKJC3_001070-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch1:2714513..2715869+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_001070-T1 ID=KJC3_001070-T1|Name=KJC3_001070-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1357bp|location=Sequence derived from alignment at ch1:2714513..2715869+ (Aspergillus niger KJC3)
GGGATTTCGACTTGCCTTTTCCTACTCCGTTATAGCGGCATTCCCTCTCC
GACCATCTCTCCCCGTCGTCACTATCATCATCTCTTGCTTCTCAATACAG
GAATCCATCCAATTCAGACACACTCACATGGGATCGGACTTGCTACGGTC
GCCGACTAATCAAGACATCAGCACGGAGAAAGCCACCCGGTCTTCCTCAC
CACCGCCACTCCCCGTGGTGACCCCCGCTGTTACTGCTGCTGCTGCTTCT
ACCGCTCAAGTGGACCCTGAAGATGACTGGGCTGGTCTCTGCGACCGCCA
GGAACGCCGGCGACGACAGAACCGGCTGAACCAACGAGCATACCGTGAGC
GCATTCCACACCGTTCACTCATCTATGATCCAACCTCAACTAACTACATA
ATCCCAGGGAAACGGAAACAAGCCGAACGCAGCGGCAATAATGCCCTGGC
CATACGTTCATCCTCATCACACCCACCACCACCACCACTAGGCACCAACA
TTAAGATTGAGCAAGGCAGCTCATCATCATCACCACCATCCTCCTCCTCC
CCCTCCTCAGACTCCAACCCCTCCCAGACCCTCACCCGCCGAACCCTAAC
CAGCGAAGCCTCCAAACCGGAAAACATCCGGCGGATATTCGAGCACTTCG
CCCGGGTCGCCTACGAAAGCTACTTCCGCGGCTCCCCCTCAGCCGACCAC
CTCCTCACGCTGAGCAAATTGAACGTCTTCCGCGCCTTCATGACCAACAT
GACCGTCCTCGGCTTCGGCAATCAAACCACCTGGTGTGATGACGACGATG
CCCTCTCCCTCTTCAACACCTTACCTCCGGAGGCTATTGAGGAAAAGAAA
TTGCCTGTGAGTCTGCGTCCGACAAAGATCCAGATGCAGGTGCCGCATCA
TCCGTGGTTGGACTTTTTCCCGTTGCCGCGTCTCCGGGATAATCTGTGCT
TGATGATTGATCGGTTTGATGATGATGAACTTTGTCATGATGTTATGGGG
TTCTGGGATAATGCGTCGGATACGTGTAGTTTGCTGGTGTGGGGAGAGCC
GTCGGATCCGGCGAATTGGGAGGTCACGGAGCAGTTTTTGAGGAAGTGGC
CGTGGGTGTTGAGAGGGTGTCCGGAGTTGTTGAAGAGTACGAATCGGTGG
AGGCAGAAGAGGGGGGAGAAGATGATTATAAGGTATTTGTAGGGATGCAG
GTGTGTAGTATGATGTATGTCAGTAGTGATGATGTGATGAATGGATTGAA
AACTAATGGTTTACGATCATCTTTGATATCTTAAGCTTAAGATTGAGCTT
GTCGAGTCAGGTACACTTTTAGTGATTAATCAACACATGCATGAGTGATC
TATTTTA
back to top

Coding sequence (CDS) from alignment at ch1:2714513..2715869+

>KJC3_001070-T1 ID=KJC3_001070-T1|Name=KJC3_001070-T1|organism=Aspergillus niger KJC3|type=CDS|length=2004bp|location=Sequence derived from alignment at ch1:2714513..2715869+ (Aspergillus niger KJC3)
ATGGGATCGGACTTGCTACGGTCGCCGACTAATCAAGACATCAGCACGGA
GAAAGCCACCCGGTCTTCCTCACCACCGCCACTCCCCGTGGTGACCCCCG
CTGTTACTGCTGCTGCTGCTTCTACCGCTCAAGTGGACCCTGAAGATGAC
TGGGCTGGTCTCTGCGACCGCCAGGAACGCCGGCGACGACAGAACCGGCT
GAACCAACGAGCATACCGGAAACGGAAACAAGCCGAACGCAGCGGCAATA
ATGCCCTGGCCATACGTTCATCCTCATCACACCCACCACCACCACCACTA
GGCACCAACATTAAGATTGAGCAAGGCAGCTCATCATCATCACCACCATC
CTCCTCCTCCCCCTCCTCAGACTCCAACCCCTCCCAGACCCTCACCCGCC
GAACCCTAACCAGCGAAGCCTCCAAACCGGAAAACATCCGGCGGATATTC
GAGCACTTCGCCCGGGTCGCCTACGAAAGCTACTTCCGCGGCTCCCCCTC
AGCCGACCACCTCCTCACGCTGAGCAAATTGAACGTCTTCCGCGCCTTCA
TGACCAACATGACCGTCCTCGGCTTCGGCAATCAAACCACCTGGTGTGAT
GACGACGATGCCCTCTCCCTCTTCAACACCTTACCTCCGGAGGCTATTGA
GGAAAAGAAATTGCCTGTGAGTCTGCGTCCGACAAAGATCCAGATGCAGG
TGCCGCATCATCCGTGGTTGGACTTTTTCCCGTTGCCGCGTCTCCGGGAT
AATCTGTGCTTGATGATTGATCGGTTTGATGATGATGAACTTTGTCATGA
TGTTATGGGGTTCTGGGATAATGCGTCGGATACGTGTAGTTTGCTGGTGT
GGGGAGAGCCGTCGGATCCGGCGAATTGGGAGGTCACGGAGCAGTTTTTG
AGGAAGTGGCCGTGGGTGTTGAGAGGGTGTCCGGAGTTGTTGAAGAGTAC
GAATCGGTGGAGGCAGAAGAGGGGGGAGAAGATGATTATAAGGTATTTGT
AGATGGGATCGGACTTGCTACGGTCGCCGACTAATCAAGACATCAGCACG
GAGAAAGCCACCCGGTCTTCCTCACCACCGCCACTCCCCGTGGTGACCCC
CGCTGTTACTGCTGCTGCTGCTTCTACCGCTCAAGTGGACCCTGAAGATG
ACTGGGCTGGTCTCTGCGACCGCCAGGAACGCCGGCGACGACAGAACCGG
CTGAACCAACGAGCATACCGGAAACGGAAACAAGCCGAACGCAGCGGCAA
TAATGCCCTGGCCATACGTTCATCCTCATCACACCCACCACCACCACCAC
TAGGCACCAACATTAAGATTGAGCAAGGCAGCTCATCATCATCACCACCA
TCCTCCTCCTCCCCCTCCTCAGACTCCAACCCCTCCCAGACCCTCACCCG
CCGAACCCTAACCAGCGAAGCCTCCAAACCGGAAAACATCCGGCGGATAT
TCGAGCACTTCGCCCGGGTCGCCTACGAAAGCTACTTCCGCGGCTCCCCC
TCAGCCGACCACCTCCTCACGCTGAGCAAATTGAACGTCTTCCGCGCCTT
CATGACCAACATGACCGTCCTCGGCTTCGGCAATCAAACCACCTGGTGTG
ATGACGACGATGCCCTCTCCCTCTTCAACACCTTACCTCCGGAGGCTATT
GAGGAAAAGAAATTGCCTGTGAGTCTGCGTCCGACAAAGATCCAGATGCA
GGTGCCGCATCATCCGTGGTTGGACTTTTTCCCGTTGCCGCGTCTCCGGG
ATAATCTGTGCTTGATGATTGATCGGTTTGATGATGATGAACTTTGTCAT
GATGTTATGGGGTTCTGGGATAATGCGTCGGATACGTGTAGTTTGCTGGT
GTGGGGAGAGCCGTCGGATCCGGCGAATTGGGAGGTCACGGAGCAGTTTT
TGAGGAAGTGGCCGTGGGTGTTGAGAGGGTGTCCGGAGTTGTTGAAGAGT
ACGAATCGGTGGAGGCAGAAGAGGGGGGAGAAGATGATTATAAGGTATTT
GTAG
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_001070KJC3_001070Aspergillus niger KJC3gene


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001070-T1.utr5p1KJC3_001070-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001070-T1.exon1KJC3_001070-T1.exon1Aspergillus niger KJC3exon
KJC3_001070-T1.exon2KJC3_001070-T1.exon2Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001070-T1.cdsKJC3_001070-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001070-T1.utr3p1KJC3_001070-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001070-T1KJC3_001070-T1-proteinAspergillus niger KJC3polypeptide


Properties
Property NameValue
DBxrefInterPro:IPR021833
DBxrefPFAM:PF11905
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch1supercontigch1:2714513..2715869 +
Powered by Drupal