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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch1:2844088..2845584+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_001117-T1 ID=KJC3_001117-T1|Name=KJC3_001117-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1497bp|location=Sequence derived from alignment at ch1:2844088..2845584+ (Aspergillus niger KJC3)
GATATATCTGTCTTAGTCTCCTCCGCTCACTCTCTCCCTCCCCTTTCACC
ACATATATTACTCTCTCGAAAGCAAAATGCCCATCCCCATCATCACCACA
GCAATAACAGAGGGCACAAACTCCATCCCGCACCTATGGACAGTTCTCAA
AATCCTCCCCTGGGCGGTCCTCCTCGCCGCCCTGAAATATTATTTCGGGG
GCGCCAGAAATACCTCTGAGCGGTTGATGCATTCGAAAGTCGTTATGATA
ACTGTACTTACCACCCACAATTCCCCTTCCCCCCGCAAACCTCAATACTA
ATATATAATTTTACTTGGAAATAGGGCGGCACATCCGGCATCGGCGCCCA
AGTAACCTCCGCCCTGGCCTCGCGCGGCGCCCAAATCATCCTCCTAACAC
AGCACCCCCCCACGGACATCTTCCTGGCCGAATACATCGAGGACCTCCGC
CGCAGCACCAACAACCAACTAATCTACGCCGAGCAAGTCGATCTCTCCTC
TCTGCACTCCATCCGCACCTTCGCGACGAAATGGATCGACAATGTGGCGC
CGCGACGCCTGGACATGGTGATTCTCTGTGGGAATGCGGCGCCGCCTGTA
TCCCAGAAACGGAAGTTGACAGTGGATGGCATCGACGAGGAGTGGATGGT
GAATTACCTAGCGAATTTCCATCTGTTGAGTATCCTGTCTCCGGCGTTGC
GGGCGCAGCCGGCGCATCGGGATGTGAGGGTTGTGTTTACGACGTGCTCG
AGTTATATTGGGGCTAAATGGGATCTGAGGCAGGTGGAGGCTTCTGCTGC
CATTACTGCTGCTGCTGCTGCGAATGCGGAGGGGGATAATGGTGAAGGGA
GGAGGGTGGTGATGAAGAACGGCAAGCTACAACGGGAGAAGCCCAAGAAT
AAGAAGAAGAAGACTAAGGGAGTCAGTTTGTATGGGCTGAGCAAGCTCTC
GCTTATGGTGTTTGCGCAATCGTTCCAGAAACATCTGAATTCGTTTAAGC
GGCCGGATGGACAGCCGTGCAGTGCGCGGGTGATTATGGTGGATCCGGGT
TTTAGTCGCACTCCGGGGATGAGACGGTGGATGACGGGGGGGTCGTTGTG
GGGATTGTTGGTGTATCTGGTGACATGGCCGGTGTGGTGGTTGGTGTTGA
AGTCGCCGCAGCAGGGGGCGCAGAGTGTGCTGTATGCGGCGATGGAGGCG
GAGTATGGGCGTGGTGAGGGGGGTTGGATGATTAAGGAGTGCAAGGAAGT
GGATTTGGCAAGGAAGGAGGTGAAGGATGAGGAGGCCGGGAAGATGTTGT
GGGAGTTTAGTGAGAAGTTGATTGAGGCTAAAGAGAGGGAGTCGGCGGTG
CGGAGGGCGTTGGCGAATAAGGAGAAGGAGGTGGCAGAGGAGAATGAGAA
GAATAAGGCATCGGGGTCGGGGGCAAAGGAACAGACGCCGGGGTCGAGGA
GGAGTCGGAAGGGGAAATAGTTGTATAAAGATTTCTTTAGTCTAGAC back to topCoding sequence (CDS) from alignment at ch1:2844088..2845584+ >KJC3_001117-T1 ID=KJC3_001117-T1|Name=KJC3_001117-T1|organism=Aspergillus niger KJC3|type=CDS|length=2646bp|location=Sequence derived from alignment at ch1:2844088..2845584+ (Aspergillus niger KJC3)
ATGCCCATCCCCATCATCACCACAGCAATAACAGAGGGCACAAACTCCAT
CCCGCACCTATGGACAGTTCTCAAAATCCTCCCCTGGGCGGTCCTCCTCG
CCGCCCTGAAATATTATTTCGGGGGCGCCAGAAATACCTCTGAGCGGTTG
ATGCATTCGAAAGTCGTTATGATAACTGGCGGCACATCCGGCATCGGCGC
CCAAGTAACCTCCGCCCTGGCCTCGCGCGGCGCCCAAATCATCCTCCTAA
CACAGCACCCCCCCACGGACATCTTCCTGGCCGAATACATCGAGGACCTC
CGCCGCAGCACCAACAACCAACTAATCTACGCCGAGCAAGTCGATCTCTC
CTCTCTGCACTCCATCCGCACCTTCGCGACGAAATGGATCGACAATGTGG
CGCCGCGACGCCTGGACATGGTGATTCTCTGTGGGAATGCGGCGCCGCCT
GTATCCCAGAAACGGAAGTTGACAGTGGATGGCATCGACGAGGAGTGGAT
GGTGAATTACCTAGCGAATTTCCATCTGTTGAGTATCCTGTCTCCGGCGT
TGCGGGCGCAGCCGGCGCATCGGGATGTGAGGGTTGTGTTTACGACGTGC
TCGAGTTATATTGGGGCTAAATGGGATCTGAGGCAGGTGGAGGCTTCTGC
TGCCATTACTGCTGCTGCTGCTGCGAATGCGGAGGGGGATAATGGTGAAG
GGAGGAGGGTGGTGATGAAGAACGGCAAGCTACAACGGGAGAAGCCCAAG
AATAAGAAGAAGAAGACTAAGGGAGTCAGTTTGTATGGGCTGAGCAAGCT
CTCGCTTATGGTGTTTGCGCAATCGTTCCAGAAACATCTGAATTCGTTTA
AGCGGCCGGATGGACAGCCGTGCAGTGCGCGGGTGATTATGGTGGATCCG
GGTTTTAGTCGCACTCCGGGGATGAGACGGTGGATGACGGGGGGGTCGTT
GTGGGGATTGTTGGTGTATCTGGTGACATGGCCGGTGTGGTGGTTGGTGT
TGAAGTCGCCGCAGCAGGGGGCGCAGAGTGTGCTGTATGCGGCGATGGAG
GCGGAGTATGGGCGTGGTGAGGGGGGTTGGATGATTAAGGAGTGCAAGGA
AGTGGATTTGGCAAGGAAGGAGGTGAAGGATGAGGAGGCCGGGAAGATGT
TGTGGGAGTTTAGTGAGAAGTTGATTGAGGCTAAAGAGAGGGAGTCGGCG
GTGCGGAGGGCGTTGGCGAATAAGGAGAAGGAGGTGGCAGAGGAGAATGA
GAAGAATAAGGCATCGGGGTCGGGGGCAAAGGAACAGACGCCGGGGTCGA
GGAGGAGTCGGAAGGGGAAATAGATGCCCATCCCCATCATCACCACAGCA
ATAACAGAGGGCACAAACTCCATCCCGCACCTATGGACAGTTCTCAAAAT
CCTCCCCTGGGCGGTCCTCCTCGCCGCCCTGAAATATTATTTCGGGGGCG
CCAGAAATACCTCTGAGCGGTTGATGCATTCGAAAGTCGTTATGATAACT
GGCGGCACATCCGGCATCGGCGCCCAAGTAACCTCCGCCCTGGCCTCGCG
CGGCGCCCAAATCATCCTCCTAACACAGCACCCCCCCACGGACATCTTCC
TGGCCGAATACATCGAGGACCTCCGCCGCAGCACCAACAACCAACTAATC
TACGCCGAGCAAGTCGATCTCTCCTCTCTGCACTCCATCCGCACCTTCGC
GACGAAATGGATCGACAATGTGGCGCCGCGACGCCTGGACATGGTGATTC
TCTGTGGGAATGCGGCGCCGCCTGTATCCCAGAAACGGAAGTTGACAGTG
GATGGCATCGACGAGGAGTGGATGGTGAATTACCTAGCGAATTTCCATCT
GTTGAGTATCCTGTCTCCGGCGTTGCGGGCGCAGCCGGCGCATCGGGATG
TGAGGGTTGTGTTTACGACGTGCTCGAGTTATATTGGGGCTAAATGGGAT
CTGAGGCAGGTGGAGGCTTCTGCTGCCATTACTGCTGCTGCTGCTGCGAA
TGCGGAGGGGGATAATGGTGAAGGGAGGAGGGTGGTGATGAAGAACGGCA
AGCTACAACGGGAGAAGCCCAAGAATAAGAAGAAGAAGACTAAGGGAGTC
AGTTTGTATGGGCTGAGCAAGCTCTCGCTTATGGTGTTTGCGCAATCGTT
CCAGAAACATCTGAATTCGTTTAAGCGGCCGGATGGACAGCCGTGCAGTG
CGCGGGTGATTATGGTGGATCCGGGTTTTAGTCGCACTCCGGGGATGAGA
CGGTGGATGACGGGGGGGTCGTTGTGGGGATTGTTGGTGTATCTGGTGAC
ATGGCCGGTGTGGTGGTTGGTGTTGAAGTCGCCGCAGCAGGGGGCGCAGA
GTGTGCTGTATGCGGCGATGGAGGCGGAGTATGGGCGTGGTGAGGGGGGT
TGGATGATTAAGGAGTGCAAGGAAGTGGATTTGGCAAGGAAGGAGGTGAA
GGATGAGGAGGCCGGGAAGATGTTGTGGGAGTTTAGTGAGAAGTTGATTG
AGGCTAAAGAGAGGGAGTCGGCGGTGCGGAGGGCGTTGGCGAATAAGGAG
AAGGAGGTGGCAGAGGAGAATGAGAAGAATAAGGCATCGGGGTCGGGGGC
AAAGGAACAGACGCCGGGGTCGAGGAGGAGTCGGAAGGGGAAATAG back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_001117-T1.utr5p1 | KJC3_001117-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_001117-T1.utr3p1 | KJC3_001117-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036291 |
| DBxref | InterPro:IPR002347 |
| DBxref | PFAM:PF08659 |
| DBxref | PFAM:PF00106 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch1 | supercontig | ch1:2844088..2845584 + |
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