You are here

Home

KJC3_001136-T1, KJC3_001136-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_001136-T1
Unique NameKJC3_001136-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch1:2893018..2894085+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_001136-T1 ID=KJC3_001136-T1|Name=KJC3_001136-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1068bp|location=Sequence derived from alignment at ch1:2893018..2894085+ (Aspergillus niger KJC3)
TCGCGATGCCGCCCAAGGACAAAGCTGCGGCGGAAGCATCGTCTTCCCGA
GAGATCACAGGCCAGAGCGCACTTCCAAGTATGTGGGAAGTTTTCTGGCT
ATAAGTGCAAGGCTAACATGAGCTGAAGTCTCGCGGATCAAGAAGATTAT
TCAATTAGACGACGATATCGTACAATGTTCGAGCAACGCTACGTTTGTGA
TCGCCATGGCCACGGTTCGTGACTACGATACTTCCTCCCCTCTTCAGTCA
ATATCGAGGCTATCAACACTCACATCTCTTTCACGAAATTAGGAGCTATT
CATTCAATACCTTACCGAACAAGGACACAACGTTGTTAAATCCGAACGAA
AGCCGCGCAAGCTTATCCAATACAAGGACCTGGGTTAGTGACCACTGGGC
AAAGGGATGATAATATGAGTTACTGACGGATGGATATCCAGCTACGGCCG
TATCACGCATCGACAACCTCGAATTTCTTTCCGACGTGATCCCCAAAACC
ACGACCTATAAGCAGTTCAAGGAGAAACGGGCGAAGGAGAAGGAACCCGG
ACCCGAGAAGGGACAGCGCACATTAAACGGCAATTTACCTGCAGCTGTCG
AAGATAAAGAGGAACTTGAGGAACAACAAAGTCTACAGCCAGTAGATGAC
AAACCTTCGAGGGGGTCTCGACCGCCAACGGTGACAATGATGGTGGATCG
AACGGTTGATACATCTGCTGGAGATCAGGATGTTGAGATGACGGACCAGT
GACGGATTCAGACGATTATGAGTTCTGGGAATTTATACATATTTTATCTT
TGCATGGTGGAGTTATTTGGAAATATCATTTTGCTTTGGTTTCAACCTGT
GGGTAGTCCATTGTAATATGTTGTTGGTCAATCGCATTGGGATATTCGGA
TATTGGGGCAGCGGAATGGAACGGACGACGGGATGAGCGGGCGGGAGTGA
ACGACGAATGGCGTAATAAGGGTATGAGTTGGTAGGAAAACACAATAAAA
AGTGTCAATGAACATGAAAGATATATGAATTGCGGAAATAAGAGTAGATG
GTAAAGAACGTAATGTGT
back to top

Coding sequence (CDS) from alignment at ch1:2893018..2894085+

>KJC3_001136-T1 ID=KJC3_001136-T1|Name=KJC3_001136-T1|organism=Aspergillus niger KJC3|type=CDS|length=2244bp|location=Sequence derived from alignment at ch1:2893018..2894085+ (Aspergillus niger KJC3)
ATGCCGCCCAAGGACAAAGCTGCGGCGGAAGCATCGTCTTCCCGAGAGAT
CACAGGCCAGAGCGCACTTCCAATCTCGCGGATCAAGAAGATTATTCAAT
TAGACGACGATATCGTACAATGTTCGAGCAACGCTACGTTTGTGATCGCC
ATGGCCACGGAGCTATTCATTCAATACCTTACCGAACAAGGACACAACGT
TGTTAAATCCGAACGAAAGCCGCGCAAGCTTATCCAATACAAGGACCTGG
CTACGGCCGTATCACGCATCGACAACCTCGAATTTCTTTCCGACGTGATC
CCCAAAACCACGACCTATAAGCAGTTCAAGGAGAAACGGGCGAAGGAGAA
GGAACCCGGACCCGAGAAGGGACAGCGCACATTAAACGGCAATTTACCTG
CAGCTGTCGAAGATAAAGAGGAACTTGAGGAACAACAAAGTCTACAGCCA
GTAGATGACAAACCTTCGAGGGGGTCTCGACCGCCAACGGTGACAATGAT
GGTGGATCGAACGGTTGATACATCTGCTGGAGATCAGGATGTTGAGATGA
CGGACCAGTGAATGCCGCCCAAGGACAAAGCTGCGGCGGAAGCATCGTCT
TCCCGAGAGATCACAGGCCAGAGCGCACTTCCAATCTCGCGGATCAAGAA
GATTATTCAATTAGACGACGATATCGTACAATGTTCGAGCAACGCTACGT
TTGTGATCGCCATGGCCACGGAGCTATTCATTCAATACCTTACCGAACAA
GGACACAACGTTGTTAAATCCGAACGAAAGCCGCGCAAGCTTATCCAATA
CAAGGACCTGGCTACGGCCGTATCACGCATCGACAACCTCGAATTTCTTT
CCGACGTGATCCCCAAAACCACGACCTATAAGCAGTTCAAGGAGAAACGG
GCGAAGGAGAAGGAACCCGGACCCGAGAAGGGACAGCGCACATTAAACGG
CAATTTACCTGCAGCTGTCGAAGATAAAGAGGAACTTGAGGAACAACAAA
GTCTACAGCCAGTAGATGACAAACCTTCGAGGGGGTCTCGACCGCCAACG
GTGACAATGATGGTGGATCGAACGGTTGATACATCTGCTGGAGATCAGGA
TGTTGAGATGACGGACCAGTGAATGCCGCCCAAGGACAAAGCTGCGGCGG
AAGCATCGTCTTCCCGAGAGATCACAGGCCAGAGCGCACTTCCAATCTCG
CGGATCAAGAAGATTATTCAATTAGACGACGATATCGTACAATGTTCGAG
CAACGCTACGTTTGTGATCGCCATGGCCACGGAGCTATTCATTCAATACC
TTACCGAACAAGGACACAACGTTGTTAAATCCGAACGAAAGCCGCGCAAG
CTTATCCAATACAAGGACCTGGCTACGGCCGTATCACGCATCGACAACCT
CGAATTTCTTTCCGACGTGATCCCCAAAACCACGACCTATAAGCAGTTCA
AGGAGAAACGGGCGAAGGAGAAGGAACCCGGACCCGAGAAGGGACAGCGC
ACATTAAACGGCAATTTACCTGCAGCTGTCGAAGATAAAGAGGAACTTGA
GGAACAACAAAGTCTACAGCCAGTAGATGACAAACCTTCGAGGGGGTCTC
GACCGCCAACGGTGACAATGATGGTGGATCGAACGGTTGATACATCTGCT
GGAGATCAGGATGTTGAGATGACGGACCAGTGAATGCCGCCCAAGGACAA
AGCTGCGGCGGAAGCATCGTCTTCCCGAGAGATCACAGGCCAGAGCGCAC
TTCCAATCTCGCGGATCAAGAAGATTATTCAATTAGACGACGATATCGTA
CAATGTTCGAGCAACGCTACGTTTGTGATCGCCATGGCCACGGAGCTATT
CATTCAATACCTTACCGAACAAGGACACAACGTTGTTAAATCCGAACGAA
AGCCGCGCAAGCTTATCCAATACAAGGACCTGGCTACGGCCGTATCACGC
ATCGACAACCTCGAATTTCTTTCCGACGTGATCCCCAAAACCACGACCTA
TAAGCAGTTCAAGGAGAAACGGGCGAAGGAGAAGGAACCCGGACCCGAGA
AGGGACAGCGCACATTAAACGGCAATTTACCTGCAGCTGTCGAAGATAAA
GAGGAACTTGAGGAACAACAAAGTCTACAGCCAGTAGATGACAAACCTTC
GAGGGGGTCTCGACCGCCAACGGTGACAATGATGGTGGATCGAACGGTTG
ATACATCTGCTGGAGATCAGGATGTTGAGATGACGGACCAGTGA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0046982protein heterodimerization activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_001136KJC3_001136Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001136-T1KJC3_001136-T1-proteinAspergillus niger KJC3polypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001136-T1.utr5p1KJC3_001136-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001136-T1.exon1KJC3_001136-T1.exon1Aspergillus niger KJC3exon
KJC3_001136-T1.exon2KJC3_001136-T1.exon2Aspergillus niger KJC3exon
KJC3_001136-T1.exon3KJC3_001136-T1.exon3Aspergillus niger KJC3exon
KJC3_001136-T1.exon4KJC3_001136-T1.exon4Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001136-T1.cdsKJC3_001136-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001136-T1.utr3p1KJC3_001136-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR003958
DBxrefInterPro:IPR009072
DBxrefPFAM:PF00808
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch1supercontigch1:2893018..2894085 +
Powered by Drupal