You are here

Home

KJC3_001157-T1, KJC3_001157-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_001157-T1
Unique NameKJC3_001157-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch1:2953788..2955295+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_001157-T1 ID=KJC3_001157-T1|Name=KJC3_001157-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1508bp|location=Sequence derived from alignment at ch1:2953788..2955295+ (Aspergillus niger KJC3)
ATCGACTTCACTTCCTCGTGCCTCCCTTGGACCTCGTTTGTCGTTGCCGC
TGGCTGGCTGCTCTTCTTTCAGGCCTCTCTCCTCTCCCTCCACCGCCGTC
GACGTTCTTTCGTCTCATTGACCTCTCCTACTTGCGCATATCCTATTTTT
CGCCATCTGTTAGATCTCTCGCCCCCCGATCGACCGTGATCTGTCTTTCG
ACCGCCCACAATGGCTGCCCTTCGCACGACCTCGCGCCTGTTCGCTTCCT
CGAAGCCGCTGTTCCGCCCAGGCGCCTTTTCTCGCTCCTATGCGACTGTT
GACGCCCTTTCCCAGGTGAGCGCAAGCGGCCACGCGAGCAGCAAGACCAT
TCCCGAATCTAAGACTTCGAATGTGCAGGACCCTAGCCCCTCGGAGCAGC
CCCGGGTCAAGACTTTCCATGTCTACCGTTGGAACCCCGATCAGCCCACC
GAGAAGCCCAAGATGCAGACTTACTCCCTGGATCTGAACAAGACCGGTCC
CATGATGCTCGACGCGCTGATCCGCATCAAGAACGAGATGGACCCCACCC
TGACTTTCCGGAGAAGTTGCAGAGAGGGTATCTGTGGAAGTTGCGCGATG
AACATTGACGGTGTCAACACCCTGGCTTGCCTGTGTATGTTGTCCTGGAG
TGCTTGGTGCGATGTCCCGGCTTAGTAGCGCTAACTTTTTGCTGTATAGG
CCGTATCCCCACCGATACCGCCAAGGAGTCTCGCATCTACCCTCTGCCTC
ACACCTATGTCGTCAAGGACCTGGTTCCCGATTTGACCTACTTCTACAAG
CAGTACAAGTCGATCAAGCCTTACCTGCAGCGCGACACCCCGACCGCGGA
TGTAAGTGTTGACAGCGTGTGCGAGCGATGTGGGATTTTTACTGATAAAT
ATATAGGGTCTCGAGAACCGCCAGAGCCCCGAGGAGCGTAAGAAGCTGGA
CGGTCTGTACGAGTGCATTCTGTGCGCTTGCTGCTCTACCTCCTGCCCCT
CGTACTGGTGGAACAGCGAGGAGTACCTTGGACCCGCTATCCTCCTCCAG
TCCTACCGTTGGTTGGCCGATTCCCGTGACGAGAAGACCGCCGAGCGTAA
GGCCGCTCTCGACAACAGCATGAGCGTGTACCGTTGCCACACCATTCTTA
ACTGCTCGCGGACTTGCCCCAAGGGCCTGAACCCCGCACGGGCCATTGCG
GAGATCAAGAAGATGATGACTGCTCATTAGAGAAGTGACACGAGATCTTA
AAAAAGAATTGCTTTCTCTTTGTGCATTACGTCTTGTGTGGCTGGGTATT
TTTCCTTCTTTCCTATCCCATTTCTTTCTGATTTATTCGTGTCTGAGCTT
TATTCCCTCCATCCCCGAGGTCTTTCATGTTGGATGTGTTTCAATAGGTG
TAAATTGTGAATGTGATTTATAGCCATGGCGGTCAGCCAGTGATCAATTG
AGTATATACTTCATTTGGTAGATGACTTGTGCGTAATAAGTCTAGATATG
CATTAGGC
back to top

Coding sequence (CDS) from alignment at ch1:2953788..2955295+

>KJC3_001157-T1 ID=KJC3_001157-T1|Name=KJC3_001157-T1|organism=Aspergillus niger KJC3|type=CDS|length=2700bp|location=Sequence derived from alignment at ch1:2953788..2955295+ (Aspergillus niger KJC3)
ATGGCTGCCCTTCGCACGACCTCGCGCCTGTTCGCTTCCTCGAAGCCGCT
GTTCCGCCCAGGCGCCTTTTCTCGCTCCTATGCGACTGTTGACGCCCTTT
CCCAGGTGAGCGCAAGCGGCCACGCGAGCAGCAAGACCATTCCCGAATCT
AAGACTTCGAATGTGCAGGACCCTAGCCCCTCGGAGCAGCCCCGGGTCAA
GACTTTCCATGTCTACCGTTGGAACCCCGATCAGCCCACCGAGAAGCCCA
AGATGCAGACTTACTCCCTGGATCTGAACAAGACCGGTCCCATGATGCTC
GACGCGCTGATCCGCATCAAGAACGAGATGGACCCCACCCTGACTTTCCG
GAGAAGTTGCAGAGAGGGTATCTGTGGAAGTTGCGCGATGAACATTGACG
GTGTCAACACCCTGGCTTGCCTGTGCCGTATCCCCACCGATACCGCCAAG
GAGTCTCGCATCTACCCTCTGCCTCACACCTATGTCGTCAAGGACCTGGT
TCCCGATTTGACCTACTTCTACAAGCAGTACAAGTCGATCAAGCCTTACC
TGCAGCGCGACACCCCGACCGCGGATGGTCTCGAGAACCGCCAGAGCCCC
GAGGAGCGTAAGAAGCTGGACGGTCTGTACGAGTGCATTCTGTGCGCTTG
CTGCTCTACCTCCTGCCCCTCGTACTGGTGGAACAGCGAGGAGTACCTTG
GACCCGCTATCCTCCTCCAGTCCTACCGTTGGTTGGCCGATTCCCGTGAC
GAGAAGACCGCCGAGCGTAAGGCCGCTCTCGACAACAGCATGAGCGTGTA
CCGTTGCCACACCATTCTTAACTGCTCGCGGACTTGCCCCAAGGGCCTGA
ACCCCGCACGGGCCATTGCGGAGATCAAGAAGATGATGACTGCTCATTAG
ATGGCTGCCCTTCGCACGACCTCGCGCCTGTTCGCTTCCTCGAAGCCGCT
GTTCCGCCCAGGCGCCTTTTCTCGCTCCTATGCGACTGTTGACGCCCTTT
CCCAGGTGAGCGCAAGCGGCCACGCGAGCAGCAAGACCATTCCCGAATCT
AAGACTTCGAATGTGCAGGACCCTAGCCCCTCGGAGCAGCCCCGGGTCAA
GACTTTCCATGTCTACCGTTGGAACCCCGATCAGCCCACCGAGAAGCCCA
AGATGCAGACTTACTCCCTGGATCTGAACAAGACCGGTCCCATGATGCTC
GACGCGCTGATCCGCATCAAGAACGAGATGGACCCCACCCTGACTTTCCG
GAGAAGTTGCAGAGAGGGTATCTGTGGAAGTTGCGCGATGAACATTGACG
GTGTCAACACCCTGGCTTGCCTGTGCCGTATCCCCACCGATACCGCCAAG
GAGTCTCGCATCTACCCTCTGCCTCACACCTATGTCGTCAAGGACCTGGT
TCCCGATTTGACCTACTTCTACAAGCAGTACAAGTCGATCAAGCCTTACC
TGCAGCGCGACACCCCGACCGCGGATGGTCTCGAGAACCGCCAGAGCCCC
GAGGAGCGTAAGAAGCTGGACGGTCTGTACGAGTGCATTCTGTGCGCTTG
CTGCTCTACCTCCTGCCCCTCGTACTGGTGGAACAGCGAGGAGTACCTTG
GACCCGCTATCCTCCTCCAGTCCTACCGTTGGTTGGCCGATTCCCGTGAC
GAGAAGACCGCCGAGCGTAAGGCCGCTCTCGACAACAGCATGAGCGTGTA
CCGTTGCCACACCATTCTTAACTGCTCGCGGACTTGCCCCAAGGGCCTGA
ACCCCGCACGGGCCATTGCGGAGATCAAGAAGATGATGACTGCTCATTAG
ATGGCTGCCCTTCGCACGACCTCGCGCCTGTTCGCTTCCTCGAAGCCGCT
GTTCCGCCCAGGCGCCTTTTCTCGCTCCTATGCGACTGTTGACGCCCTTT
CCCAGGTGAGCGCAAGCGGCCACGCGAGCAGCAAGACCATTCCCGAATCT
AAGACTTCGAATGTGCAGGACCCTAGCCCCTCGGAGCAGCCCCGGGTCAA
GACTTTCCATGTCTACCGTTGGAACCCCGATCAGCCCACCGAGAAGCCCA
AGATGCAGACTTACTCCCTGGATCTGAACAAGACCGGTCCCATGATGCTC
GACGCGCTGATCCGCATCAAGAACGAGATGGACCCCACCCTGACTTTCCG
GAGAAGTTGCAGAGAGGGTATCTGTGGAAGTTGCGCGATGAACATTGACG
GTGTCAACACCCTGGCTTGCCTGTGCCGTATCCCCACCGATACCGCCAAG
GAGTCTCGCATCTACCCTCTGCCTCACACCTATGTCGTCAAGGACCTGGT
TCCCGATTTGACCTACTTCTACAAGCAGTACAAGTCGATCAAGCCTTACC
TGCAGCGCGACACCCCGACCGCGGATGGTCTCGAGAACCGCCAGAGCCCC
GAGGAGCGTAAGAAGCTGGACGGTCTGTACGAGTGCATTCTGTGCGCTTG
CTGCTCTACCTCCTGCCCCTCGTACTGGTGGAACAGCGAGGAGTACCTTG
GACCCGCTATCCTCCTCCAGTCCTACCGTTGGTTGGCCGATTCCCGTGAC
GAGAAGACCGCCGAGCGTAAGGCCGCTCTCGACAACAGCATGAGCGTGTA
CCGTTGCCACACCATTCTTAACTGCTCGCGGACTTGCCCCAAGGGCCTGA
ACCCCGCACGGGCCATTGCGGAGATCAAGAAGATGATGACTGCTCATTAG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0006099tricarboxylic acid cycle
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:00515372 iron, 2 sulfur cluster binding
GO:0016491oxidoreductase activity
GO:0051536iron-sulfur cluster binding
GO:0009055electron transfer activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
SDH2KJC3_001157Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001157-T1KJC3_001157-T1-proteinAspergillus niger KJC3polypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001157-T1.utr5p1KJC3_001157-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001157-T1.exon1KJC3_001157-T1.exon1Aspergillus niger KJC3exon
KJC3_001157-T1.exon2KJC3_001157-T1.exon2Aspergillus niger KJC3exon
KJC3_001157-T1.exon3KJC3_001157-T1.exon3Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001157-T1.cdsKJC3_001157-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001157-T1.utr3p1KJC3_001157-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


Properties
Property NameValue
NoteBUSCO:EOG09263X1F
DBxrefInterPro:IPR036010
DBxrefInterPro:IPR017896
DBxrefInterPro:IPR001041
DBxrefInterPro:IPR017900
DBxrefInterPro:IPR006058
DBxrefInterPro:IPR004489
DBxrefInterPro:IPR009051
DBxrefInterPro:IPR012675
DBxrefInterPro:IPR025192
DBxrefPFAM:PF13183
DBxrefPFAM:PF13534
DBxrefPFAM:PF13237
DBxrefPFAM:PF13085
Product subunit B
Productsuccinate dehydrogenase complex
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch1supercontigch1:2953788..2955295 +
Powered by Drupal