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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch1:3958809..3959801- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_001495-T1 ID=KJC3_001495-T1|Name=KJC3_001495-T1|organism=Aspergillus niger KJC3|type=mRNA|length=993bp|location=Sequence derived from alignment at ch1:3958809..3959801- (Aspergillus niger KJC3)
AAGAGTTCAATCAGGGCTGAATCAAGATATATCGATAGACATCAATGCAC
CCGAAGAGCACGGGCAGCCGCTACCCCACAAGATCGAATGTGGCAACAGG
GCCTTCGATCACTGCTGCTACCAATCCCCCGAGAGTGTCGTGCCTGTTGA
GCGACTCCGCCAAAGCTCCCCCGCCTAGTGCAGTGGACAGCATGGATTCG
AACAGCCTCGACCCTGAAGCTGCCCCAACTGACAAAAACAACAATGTGGC
GGACTCTGCAGGAGATCCACCCATCGGGCGAGCCAGTGGACGGGCAAAGC
TGAATAGCTTGGCTCGGGCATTTCCGAAACCTCCCGGACAGGGGCCACCA
ACAGCTTGGGCCCTGGATGAGGATGCCACTGTCATTGCCATGCACGATCA
TGGAGAGAGGTGGGAACAGATTAGTCAGTATTTACCTGGCCGTACTCCCG
AGGCATGCGAATGCCGGTACGCCTTCCTCCGACACCGGCCTGAGTGGAAC
GAGAGCTGGAAGAACAGCATAGCGTACTGGTACCAGCAGTGCGTGAGCCG
TCATTCCCCAGACACGGTTGACTTGGCGAGCTGATCCTCGTGCCTTGTAC
AGATACAAGTCGGAGCTTTGGGCTCACGTAAGCGAGAAAACACGTCTTCC
CGAGCGCGATATCGAAGCCCTGGTGTGGCACCTTGGACCATGGGAGATCG
CGCGCCGCGCAGCAGTTGCACAACACATAGCTTGAGAGGGCTTCCGGTGT
TGTCCCATCATAGTCCTGCTGTCTGGCGCAGATACAATTCCACTACCGAT
CTTAGGACCTTTATAACAACCACAGAAGTCGATGGACATTTGCAGCCGGG
CGGTGGCAATCTATACTGCACTGCATCACGAAGGATTCTCTATCACCAAC
TGCCAATATAGTACGTATCCGTGCTACGGCCCGCATTGCAGTCTTGAACC
GTTCCAGTACTAGATTATATGTCAGACGCCTACTAGTCCAGGA back to topCoding sequence (CDS) from alignment at ch1:3958809..3959801- >KJC3_001495-T1 ID=KJC3_001495-T1|Name=KJC3_001495-T1|organism=Aspergillus niger KJC3|type=CDS|length=1254bp|location=Sequence derived from alignment at ch1:3958809..3959801- (Aspergillus niger KJC3)
ATACAAGTCGGAGCTTTGGGCTCACGTAAGCGAGAAAACACGTCTTCCCG
AGCGCGATATCGAAGCCCTGGTGTGGCACCTTGGACCATGGGAGATCGCG
CGCCGCGCAGCAGTTGCACAACACATAGCTTGAATGCACCCGAAGAGCAC
GGGCAGCCGCTACCCCACAAGATCGAATGTGGCAACAGGGCCTTCGATCA
CTGCTGCTACCAATCCCCCGAGAGTGTCGTGCCTGTTGAGCGACTCCGCC
AAAGCTCCCCCGCCTAGTGCAGTGGACAGCATGGATTCGAACAGCCTCGA
CCCTGAAGCTGCCCCAACTGACAAAAACAACAATGTGGCGGACTCTGCAG
GAGATCCACCCATCGGGCGAGCCAGTGGACGGGCAAAGCTGAATAGCTTG
GCTCGGGCATTTCCGAAACCTCCCGGACAGGGGCCACCAACAGCTTGGGC
CCTGGATGAGGATGCCACTGTCATTGCCATGCACGATCATGGAGAGAGGT
GGGAACAGATTAGTCAGTATTTACCTGGCCGTACTCCCGAGGCATGCGAA
TGCCGGTACGCCTTCCTCCGACACCGGCCTGAGTGGAACGAGAGCTGGAA
GAACAGCATAGCGTACTGGTACCAGCAATACAAGTCGGAGCTTTGGGCTC
ACGTAAGCGAGAAAACACGTCTTCCCGAGCGCGATATCGAAGCCCTGGTG
TGGCACCTTGGACCATGGGAGATCGCGCGCCGCGCAGCAGTTGCACAACA
CATAGCTTGAATGCACCCGAAGAGCACGGGCAGCCGCTACCCCACAAGAT
CGAATGTGGCAACAGGGCCTTCGATCACTGCTGCTACCAATCCCCCGAGA
GTGTCGTGCCTGTTGAGCGACTCCGCCAAAGCTCCCCCGCCTAGTGCAGT
GGACAGCATGGATTCGAACAGCCTCGACCCTGAAGCTGCCCCAACTGACA
AAAACAACAATGTGGCGGACTCTGCAGGAGATCCACCCATCGGGCGAGCC
AGTGGACGGGCAAAGCTGAATAGCTTGGCTCGGGCATTTCCGAAACCTCC
CGGACAGGGGCCACCAACAGCTTGGGCCCTGGATGAGGATGCCACTGTCA
TTGCCATGCACGATCATGGAGAGAGGTGGGAACAGATTAGTCAGTATTTA
CCTGGCCGTACTCCCGAGGCATGCGAATGCCGGTACGCCTTCCTCCGACA
CCGGCCTGAGTGGAACGAGAGCTGGAAGAACAGCATAGCGTACTGGTACC
AGCA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_001495-T1.utr3p1 | KJC3_001495-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_001495-T1.utr5p1 | KJC3_001495-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR009057 |
| DBxref | InterPro:IPR017877 |
| DBxref | InterPro:IPR001005 |
| DBxref | PFAM:PF00249 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch1 | supercontig | ch1:3958809..3959801 - |
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