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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch2:55661..57639- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_001557-T1 ID=KJC3_001557-T1|Name=KJC3_001557-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1979bp|location=Sequence derived from alignment at ch2:55661..57639- (Aspergillus niger KJC3)
AAACAATGGGGCTTTCTGCGCAAGCCTGAATCCCTCGCTGTATCCCTCTG
GCCCACTCACTCGACTAAGAAAAAATGGTCGGCGTGCCCGGTCAATATGG
CGGGTGTGCGACATGTCGCAGGAGGAAAAAAGGCGTACGTTGAACTCCGA
GCTGTGACTGTCTCATGCTGATAGCCCCGTCTGGGAAACAGTGCGACAGG
AAGACCCCTTTTTGTACCCAGTGCGTTCACGCTAGGCTCGTATGCGAGGG
CTACTCTCGCAACTATTCGGTCTGGATCAACTCGACAGACGGCGAGAATC
GCAAGTACACCAAGTGTACCGGCAGCGTACAATCTCGTAGACGCGGGGCT
CCAGAAATCACCCTGCATGAGTCGCTGGCGAGAAGTACCAGAGAGGTTAC
TTACGTCGGTCTTTATCTGGCAGCGTTCTTACCAAATGGTCGCCTTTTCA
CCCAGGAGGCCGCGCAGATATCCTCTGCGGGGTGGCTAAGACACCTTGAC
AAATTATGTCGGTCTGAGAAAACTCTGCGCTTCATTACCCTTGCTCACGG
GCTGTCAATGCTGGCTACGAGAGACCACGACAGCCAGCTGAAGTTCAAGG
GCGTCCAGGCACACAGCATAGCGCTGCAGGAAATGCGCACAGCCCTGCGG
GATCCACAAAGGGCCTCGGGAGATGGGATCTTGGCCGCTATTCGGCTGTT
CCGCTTTTATGAGGTAAGTTGTGCTTCCTGTGAAGACTGTCAGGTCACTA
ATTCTTGCCAGATTCTCTATGGCGCCGAGTCCCGTGGTTCGGACAAAGAA
AACCCTACCCTCCAAATCAAGGGGTACTACGCCCATACTGACGGTGAAAT
GGCCTTGTTCATGAACAGGGGCTGGCAGAAGGATTGGAGCGAAGCTGGAA
TGTACTTACTCGTAAGCGGCCGGATTGTGTCAGTAAGTTTCCCACCATCG
AATTCCGTCAACGGACTGTCCATATTCATTGGTATATGTGTAGTTCATTC
TAGGCGTCGGACGAAGAAAGCGTTCGCCCTTCAGCGACAACAACTGGATG
TCAGCACCCTGGAAATACAGAACAAAGTCCCTACTTCATGGTCTGACTGA
CATTCTGGTTCAAGTTCCGGGTTTATTGGAAGAGCTGGACACCATTAGAG
CATCTCCTATTGCGGAGCGTAGTCTACGTGGCTGGGAAAACTTGCTTGGC
GAATGTATCCGCATCGAGCAAATGTTACTTGCCTGGAAGGAAACCATGGG
AGACAAACTGCAGACCTTTGATTACACCCAATCGGGGAATTCCCCCCAGA
TGCCACAGGTGGACAGGGACTTTGCATTGTTGCACATGAGCTGTCTCTAT
TGGAGCTGCTGTATCCTCCTATACACGACAATCCATATGGCTGCGAATGA
GGCGCATCAGGGTCCAAGCTTCACATACTTCTTGACAATTCCCTTTTCTT
CTCCAGGATGCCCCAACTATCGCGATGAGAGGAACCCGACTTTGCACGCC
CACAGGATAATCTACACCATACCTTTATCACATGGGCCTTATGCCGGGGG
CTATGGAGCGCTGTGTTCAACGTTTCCGCTAGGCATGGCGCTCCGTTATC
TCGCGGTGGCTCATCTTTTCCCGCACGAGGGTGGTGACACCCAAGGCGTG
CACAAACTCTCACAAGAACTACTTTCACAACCGTTCATGAAGGCGTATAC
CGCACGTTTTGTTAGTCATCTACACAATGTTGACGTACCAGGGCAATCTC
TAAAAGACATAGCTGGATGGCATGGGGTAGAACTGAGGATGAGGAGATGG
TGGTTTGGCCCTATGCTTGACCACAACCTCGGTGCTATATAGAGATGTAC
GCTGGAGCCGCCAATAAGCCGAGCCATTAGTGGGGCGTTGGTGGTAGTAT
CATAGCTAGAGGATTTGGACCAGCACTTCGACAAGATCTGCGCGAGACAC
CTGCAGGATCAAACCCCATCATACAGCTC back to topCoding sequence (CDS) from alignment at ch2:55661..57639- >KJC3_001557-T1 ID=KJC3_001557-T1|Name=KJC3_001557-T1|organism=Aspergillus niger KJC3|type=CDS|length=6408bp|location=Sequence derived from alignment at ch2:55661..57639- (Aspergillus niger KJC3)
TTCATTCTAGGCGTCGGACGAAGAAAGCGTTCGCCCTTCAGCGACAACAA
CTGGATGTCAGCACCCTGGAAATACAGAACAAAGTCCCTACTTCATGGTC
TGACTGACATTCTGGTTCAAGTTCCGGGTTTATTGGAAGAGCTGGACACC
ATTAGAGCATCTCCTATTGCGGAGCGTAGTCTACGTGGCTGGGAAAACTT
GCTTGGCGAATGTATCCGCATCGAGCAAATGTTACTTGCCTGGAAGGAAA
CCATGGGAGACAAACTGCAGACCTTTGATTACACCCAATCGGGGAATTCC
CCCCAGATGCCACAGGTGGACAGGGACTTTGCATTGTTGCACATGAGCTG
TCTCTATTGGAGCTGCTGTATCCTCCTATACACGACAATCCATATGGCTG
CGAATGAGGCGCATCAGGGTCCAAGCTTCACATACTTCTTGACAATTCCC
TTTTCTTCTCCAGGATGCCCCAACTATCGCGATGAGAGGAACCCGACTTT
GCACGCCCACAGGATAATCTACACCATACCTTTATCACATGGGCCTTATG
CCGGGGGCTATGGAGCGCTGTGTTCAACGTTTCCGCTAGGCATGGCGCTC
CGTTATCTCGCGGTGGCTCATCTTTTCCCGCACGAGGGTGGTGACACCCA
AGGCGTGCACAAACTCTCACAAGAACTACTTTCACAACCGTTCATGAAGG
CGTATACCGCACGTTTTGTTAGTCATCTACACAATGTTGACGTACCAGGG
CAATCTCTAAAAGACATAGCTGGATGGCATGGGGTAGAACTGAGGATGAG
GAGATGGTGGTTTGGCCCTATGCTTGACCACAACCTCGGTGCTATATAGA
TTCTCTATGGCGCCGAGTCCCGTGGTTCGGACAAAGAAAACCCTACCCTC
CAAATCAAGGGGTACTACGCCCATACTGACGGTGAAATGGCCTTGTTCAT
GAACAGGGGCTGGCAGAAGGATTGGAGCGAAGCTGGAATGTACTTACTCG
TAAGCGGCCGGATTGTGTCATGCGACAGGAAGACCCCTTTTTGTACCCAG
TGCGTTCACGCTAGGCTCGTATGCGAGGGCTACTCTCGCAACTATTCGGT
CTGGATCAACTCGACAGACGGCGAGAATCGCAAGTACACCAAGTGTACCG
GCAGCGTACAATCTCGTAGACGCGGGGCTCCAGAAATCACCCTGCATGAG
TCGCTGGCGAGAAGTACCAGAGAGGTTACTTACGTCGGTCTTTATCTGGC
AGCGTTCTTACCAAATGGTCGCCTTTTCACCCAGGAGGCCGCGCAGATAT
CCTCTGCGGGGTGGCTAAGACACCTTGACAAATTATGTCGGTCTGAGAAA
ACTCTGCGCTTCATTACCCTTGCTCACGGGCTGTCAATGCTGGCTACGAG
AGACCACGACAGCCAGCTGAAGTTCAAGGGCGTCCAGGCACACAGCATAG
CGCTGCAGGAAATGCGCACAGCCCTGCGGGATCCACAAAGGGCCTCGGGA
GATGGGATCTTGGCCGCTATTCGGCTGTTCCGCTTTTATGAGATGGTCGG
CGTGCCCGGTCAATATGGCGGGTGTGCGACATGTCGCAGGAGGAAAAAAG
GCTTCATTCTAGGCGTCGGACGAAGAAAGCGTTCGCCCTTCAGCGACAAC
AACTGGATGTCAGCACCCTGGAAATACAGAACAAAGTCCCTACTTCATGG
TCTGACTGACATTCTGGTTCAAGTTCCGGGTTTATTGGAAGAGCTGGACA
CCATTAGAGCATCTCCTATTGCGGAGCGTAGTCTACGTGGCTGGGAAAAC
TTGCTTGGCGAATGTATCCGCATCGAGCAAATGTTACTTGCCTGGAAGGA
AACCATGGGAGACAAACTGCAGACCTTTGATTACACCCAATCGGGGAATT
CCCCCCAGATGCCACAGGTGGACAGGGACTTTGCATTGTTGCACATGAGC
TGTCTCTATTGGAGCTGCTGTATCCTCCTATACACGACAATCCATATGGC
TGCGAATGAGGCGCATCAGGGTCCAAGCTTCACATACTTCTTGACAATTC
CCTTTTCTTCTCCAGGATGCCCCAACTATCGCGATGAGAGGAACCCGACT
TTGCACGCCCACAGGATAATCTACACCATACCTTTATCACATGGGCCTTA
TGCCGGGGGCTATGGAGCGCTGTGTTCAACGTTTCCGCTAGGCATGGCGC
TCCGTTATCTCGCGGTGGCTCATCTTTTCCCGCACGAGGGTGGTGACACC
CAAGGCGTGCACAAACTCTCACAAGAACTACTTTCACAACCGTTCATGAA
GGCGTATACCGCACGTTTTGTTAGTCATCTACACAATGTTGACGTACCAG
GGCAATCTCTAAAAGACATAGCTGGATGGCATGGGGTAGAACTGAGGATG
AGGAGATGGTGGTTTGGCCCTATGCTTGACCACAACCTCGGTGCTATATA
GATTCTCTATGGCGCCGAGTCCCGTGGTTCGGACAAAGAAAACCCTACCC
TCCAAATCAAGGGGTACTACGCCCATACTGACGGTGAAATGGCCTTGTTC
ATGAACAGGGGCTGGCAGAAGGATTGGAGCGAAGCTGGAATGTACTTACT
CGTAAGCGGCCGGATTGTGTCATGCGACAGGAAGACCCCTTTTTGTACCC
AGTGCGTTCACGCTAGGCTCGTATGCGAGGGCTACTCTCGCAACTATTCG
GTCTGGATCAACTCGACAGACGGCGAGAATCGCAAGTACACCAAGTGTAC
CGGCAGCGTACAATCTCGTAGACGCGGGGCTCCAGAAATCACCCTGCATG
AGTCGCTGGCGAGAAGTACCAGAGAGGTTACTTACGTCGGTCTTTATCTG
GCAGCGTTCTTACCAAATGGTCGCCTTTTCACCCAGGAGGCCGCGCAGAT
ATCCTCTGCGGGGTGGCTAAGACACCTTGACAAATTATGTCGGTCTGAGA
AAACTCTGCGCTTCATTACCCTTGCTCACGGGCTGTCAATGCTGGCTACG
AGAGACCACGACAGCCAGCTGAAGTTCAAGGGCGTCCAGGCACACAGCAT
AGCGCTGCAGGAAATGCGCACAGCCCTGCGGGATCCACAAAGGGCCTCGG
GAGATGGGATCTTGGCCGCTATTCGGCTGTTCCGCTTTTATGAGATGGTC
GGCGTGCCCGGTCAATATGGCGGGTGTGCGACATGTCGCAGGAGGAAAAA
AGGCTTCATTCTAGGCGTCGGACGAAGAAAGCGTTCGCCCTTCAGCGACA
ACAACTGGATGTCAGCACCCTGGAAATACAGAACAAAGTCCCTACTTCAT
GGTCTGACTGACATTCTGGTTCAAGTTCCGGGTTTATTGGAAGAGCTGGA
CACCATTAGAGCATCTCCTATTGCGGAGCGTAGTCTACGTGGCTGGGAAA
ACTTGCTTGGCGAATGTATCCGCATCGAGCAAATGTTACTTGCCTGGAAG
GAAACCATGGGAGACAAACTGCAGACCTTTGATTACACCCAATCGGGGAA
TTCCCCCCAGATGCCACAGGTGGACAGGGACTTTGCATTGTTGCACATGA
GCTGTCTCTATTGGAGCTGCTGTATCCTCCTATACACGACAATCCATATG
GCTGCGAATGAGGCGCATCAGGGTCCAAGCTTCACATACTTCTTGACAAT
TCCCTTTTCTTCTCCAGGATGCCCCAACTATCGCGATGAGAGGAACCCGA
CTTTGCACGCCCACAGGATAATCTACACCATACCTTTATCACATGGGCCT
TATGCCGGGGGCTATGGAGCGCTGTGTTCAACGTTTCCGCTAGGCATGGC
GCTCCGTTATCTCGCGGTGGCTCATCTTTTCCCGCACGAGGGTGGTGACA
CCCAAGGCGTGCACAAACTCTCACAAGAACTACTTTCACAACCGTTCATG
AAGGCGTATACCGCACGTTTTGTTAGTCATCTACACAATGTTGACGTACC
AGGGCAATCTCTAAAAGACATAGCTGGATGGCATGGGGTAGAACTGAGGA
TGAGGAGATGGTGGTTTGGCCCTATGCTTGACCACAACCTCGGTGCTATA
TAGATTCTCTATGGCGCCGAGTCCCGTGGTTCGGACAAAGAAAACCCTAC
CCTCCAAATCAAGGGGTACTACGCCCATACTGACGGTGAAATGGCCTTGT
TCATGAACAGGGGCTGGCAGAAGGATTGGAGCGAAGCTGGAATGTACTTA
CTCGTAAGCGGCCGGATTGTGTCATGCGACAGGAAGACCCCTTTTTGTAC
CCAGTGCGTTCACGCTAGGCTCGTATGCGAGGGCTACTCTCGCAACTATT
CGGTCTGGATCAACTCGACAGACGGCGAGAATCGCAAGTACACCAAGTGT
ACCGGCAGCGTACAATCTCGTAGACGCGGGGCTCCAGAAATCACCCTGCA
TGAGTCGCTGGCGAGAAGTACCAGAGAGGTTACTTACGTCGGTCTTTATC
TGGCAGCGTTCTTACCAAATGGTCGCCTTTTCACCCAGGAGGCCGCGCAG
ATATCCTCTGCGGGGTGGCTAAGACACCTTGACAAATTATGTCGGTCTGA
GAAAACTCTGCGCTTCATTACCCTTGCTCACGGGCTGTCAATGCTGGCTA
CGAGAGACCACGACAGCCAGCTGAAGTTCAAGGGCGTCCAGGCACACAGC
ATAGCGCTGCAGGAAATGCGCACAGCCCTGCGGGATCCACAAAGGGCCTC
GGGAGATGGGATCTTGGCCGCTATTCGGCTGTTCCGCTTTTATGAGATGG
TCGGCGTGCCCGGTCAATATGGCGGGTGTGCGACATGTCGCAGGAGGAAA
AAAGGCTTCATTCTAGGCGTCGGACGAAGAAAGCGTTCGCCCTTCAGCGA
CAACAACTGGATGTCAGCACCCTGGAAATACAGAACAAAGTCCCTACTTC
ATGGTCTGACTGACATTCTGGTTCAAGTTCCGGGTTTATTGGAAGAGCTG
GACACCATTAGAGCATCTCCTATTGCGGAGCGTAGTCTACGTGGCTGGGA
AAACTTGCTTGGCGAATGTATCCGCATCGAGCAAATGTTACTTGCCTGGA
AGGAAACCATGGGAGACAAACTGCAGACCTTTGATTACACCCAATCGGGG
AATTCCCCCCAGATGCCACAGGTGGACAGGGACTTTGCATTGTTGCACAT
GAGCTGTCTCTATTGGAGCTGCTGTATCCTCCTATACACGACAATCCATA
TGGCTGCGAATGAGGCGCATCAGGGTCCAAGCTTCACATACTTCTTGACA
ATTCCCTTTTCTTCTCCAGGATGCCCCAACTATCGCGATGAGAGGAACCC
GACTTTGCACGCCCACAGGATAATCTACACCATACCTTTATCACATGGGC
CTTATGCCGGGGGCTATGGAGCGCTGTGTTCAACGTTTCCGCTAGGCATG
GCGCTCCGTTATCTCGCGGTGGCTCATCTTTTCCCGCACGAGGGTGGTGA
CACCCAAGGCGTGCACAAACTCTCACAAGAACTACTTTCACAACCGTTCA
TGAAGGCGTATACCGCACGTTTTGTTAGTCATCTACACAATGTTGACGTA
CCAGGGCAATCTCTAAAAGACATAGCTGGATGGCATGGGGTAGAACTGAG
GATGAGGAGATGGTGGTTTGGCCCTATGCTTGACCACAACCTCGGTGCTA
TATAGATTCTCTATGGCGCCGAGTCCCGTGGTTCGGACAAAGAAAACCCT
ACCCTCCAAATCAAGGGGTACTACGCCCATACTGACGGTGAAATGGCCTT
GTTCATGAACAGGGGCTGGCAGAAGGATTGGAGCGAAGCTGGAATGTACT
TACTCGTAAGCGGCCGGATTGTGTCATGCGACAGGAAGACCCCTTTTTGT
ACCCAGTGCGTTCACGCTAGGCTCGTATGCGAGGGCTACTCTCGCAACTA
TTCGGTCTGGATCAACTCGACAGACGGCGAGAATCGCAAGTACACCAAGT
GTACCGGCAGCGTACAATCTCGTAGACGCGGGGCTCCAGAAATCACCCTG
CATGAGTCGCTGGCGAGAAGTACCAGAGAGGTTACTTACGTCGGTCTTTA
TCTGGCAGCGTTCTTACCAAATGGTCGCCTTTTCACCCAGGAGGCCGCGC
AGATATCCTCTGCGGGGTGGCTAAGACACCTTGACAAATTATGTCGGTCT
GAGAAAACTCTGCGCTTCATTACCCTTGCTCACGGGCTGTCAATGCTGGC
TACGAGAGACCACGACAGCCAGCTGAAGTTCAAGGGCGTCCAGGCACACA
GCATAGCGCTGCAGGAAATGCGCACAGCCCTGCGGGATCCACAAAGGGCC
TCGGGAGATGGGATCTTGGCCGCTATTCGGCTGTTCCGCTTTTATGAGAT
GGTCGGCGTGCCCGGTCAATATGGCGGGTGTGCGACATGTCGCAGGAGGA
AAAAAGGC back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0042025 | host cell nucleus |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_001557-T1.utr3p1 | KJC3_001557-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_001557-T1.utr5p1 | KJC3_001557-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036864 |
| DBxref | InterPro:IPR001138 |
| DBxref | PFAM:PF00172 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch2 | supercontig | ch2:55661..57639 - |
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