|
|
Sequences
The following sequences are available for this feature:
mRNA from alignment at ch2:903280..906665+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_001861-T1 ID=KJC3_001861-T1|Name=KJC3_001861-T1|organism=Aspergillus niger KJC3|type=mRNA|length=3386bp|location=Sequence derived from alignment at ch2:903280..906665+ (Aspergillus niger KJC3)
TTCAGGTACGCCTTGTCGCTTTGTCGGTTTCAAGGCTGCTGGAATGAAAT
ATGATATTTTAATTGAGCAGGGTGTTATATATTTAATTCGTATCATAGTC
ATCTTTCAGTCGGACTGCTTTGCGTGACTTGTGACACTGACGCGATCTTT
TAAAGACCGGTGGCGGCGATAGAAGGGCCGGCGGCAAGCGTCACTTTATT
AGTTCTTTTGATCTCGTCTACTATGGCTCTCCGCGAAGCAGCTATGTCTT
GGTAATTCTACCCCAACTTCTATCACTGAACAAATGCTTATATCTATGCT
AGCTCATTCAATGGGTATTTGTGCCTACCTTCTCTGCATAGCCGGGCTAC
CATGACAGCCACTCGCTCAAGGTCGCTGCGCAGGCCGTGCGCCTTGGTTA
AGCAAATGACGTTGAATAGCTTAACGAGCAGGTTCTCTTCTACTTTGAAT
AGAAATTGCTGCTTTTCACGTTCCAGTTCGGGCAAAACTGGGAGCTGTGT
TATACAGAGCCTGCCTAGAACACGGCATCTCTCATCCAGGATTGACATTT
GGTCCTGCGAGCTTACACCCCGGCCTTCACAGGCCAGCGACTCGATACAT
TGCTACCAGACCTCTCCATATACTGGTCGCCAGATTGCCACTTCTCATAG
TCGCAACCTTTCACATTATCTAGCTTCAGAACAAAAAAGATGTTATAGCT
CGAGTACAGTTCCGCGACCGATGATTGAGCATATAATCGACAGTAAAGAT
GTCGGAGAAATCCAGACCCCAGAAACTCCAGTATTACTAGCCAAATCACA
CACCCTGGCTTCAAGCAACAATGACATAGACGAGCTTGCCCCGGAAAGCC
ACCCTCCAACAGAAGAGACAAAACCAGTCCTCTCACCAGCCGAGGACTCC
CCAACACCCAAGTTCTGGAGCCACACCATGCTCAAAAGCCCTGAAGGCAA
AAACATTATCGTGCATTACTGCAAGACACTCAAAAGCAGCGAAGAAGTTG
CGCAACTCTTCCTAAATGACAAAATTCTCGGCTTCGACATGGAATGGAAA
GCCCAGGCCTCCGCCTGGAACAGCATCCAAGACAACGTATCTCTAATCCA
AATCGCAAACAGAGAGCGAATCGCTCTCTTCCACGTTGCCCTTTTCAGAC
CAGGCAGAAAGATCAGCGACCTCGTCCCTCCATCGTTGAAACAAATCATC
GAATCCCCAGACATCACAAAGCTCGGTGTATCAATCAAAGCAGACTGCAC
GCGTCTCCGCAAGTACCTCAAGGTCGATGCGCACGGGATCTTCGAGCTCA
GCCACCTCCATAAGCTGGTAAAATACTGCCAGACTAACCCGAAACTCATC
AACAAGCGCCCTGTCAACCTGAGTGAGCAGGTGGAGGAACATCTGGGGCT
CCCGTTGGAGAAGGCGGAAGATGTGAGGTGCAGTGATTGGACGGTATCTT
TGAGTTATCGTCAGGTCCAATGTAAGTCTTATTCGTCAACTCTGATGTTT
GATAAATGGTTAACGAGTGTATGTCTGTAGATGCTGCATCCGATTCTTAC
GCTTGTATCTGCTTGTTTGATACTATGGATGCGAAACGAAAGGCTCTCGA
CCCTCGACCTCCTTTGCCTGCTCATGCGGATTTGGATCTGCCGATTCGTA
TTGTGCGAGAGCCGACCGTGACGACGGTCCCGGATGATGTCGAGGTGGTC
AAGCCTTAGTGGCTTACTTTGCGGAGGCAGAGTAACGATACAGTGAAATT
AGATGGTTTCACGGCATATGCATGCTCCCATGAGCAGACGGGATCGTTGC
TGCCTGGAACAACATAGAACGACTTGATATAGTTTTTGGTCGGTTGGAAT
AAACCAGATGTTGGGGCTTTAAACTTCGAAAGTTGGATCTACATTAGATC
TCAGAGCTAGAACATGATGTGATACCCATGCTAATATCAAGATATACGGC
ATTCTAATCAGGAAATAAATAGAAAGTCATTGACAATCGAGACTGTCGAA
GTAAATGCGTCTAGAATGAAATGGGGGTATAATTATAGACAAGAAAGCAT
GATACAGTCATGTATATAAACAGCGCTGTAAAGTCATAAACCATCAAGAA
TCATCCTCTCAAGGGCAGCACTTTCGACAAGAGCACCTCCTGCCGACAAA
GCGGGCACTCTGGCTTCTCCCGTACCCAGTCCCGTACACACGTCCAACAG
AAGACATGTCCACAGGTCGTGACACTCGGATCCTTGAATAACTCCAGACA
AAGCGTACATTTGCGCTGCTGCCCTTCAGGGATCCAGGGGATCGCATTGG
AATCTTCCGAGAAATCGTACCGGGCAGCAGAAGCGGGAAGGAGAGGAAGC
GAGGAGGGGTTCTCGAGAGACGGTATCAAGGAAGCTCCATACTGTTTCAT
ACCGCCATCTGCTTCAAGCCCACTATCTTCATTTTCTTGTCCCAAATCGG
CCCCGACCTTCTTGATATGCAGGATGCCCTGTACAGCGATTTGCAAGACA
AGCAGCACACCCAAGACCTCATAACCCACCCGTTGTTCACCCTCCTCGAC
CTTTTTCGTGAAGACATATCGCAGACCCGAGAACCGTTTCGAGAGATGGT
AATAAGCGCCCGTGAAATAGAACGTTGCGATGCTAACAGCATATATGGGT
GACAGCGACGTGATGGAGTCCAGATGCTCGAGGATGTACTTCTGGATCCG
CAATTTCGTGAAGAAAGACGGTTTCTTAGCCAGCTTGTTGTCTTTGGCTT
GCTCCACTGTTGTTTTCTTGGCTTGGGATGCTTTGAGTTGTTGTCGAGCG
ATACTGCGTTCCAGCTTCGATCGCAATCGTTGTCGGAAAGCGGGGAGGAT
TCGCTGCAGTGTCCAGGGCAGCAGGATACTGCTGAGAATGTAACCGGCTC
GTCTGGGGAGAGAAGGAAGTTGGAGGGTGTCGTCTTCTAACTGGACCAAG
TCGCAGTATTCTTCTCCTAGGGTTCGGTTTCCAATGAAGGTGGTCAAGGC
AAAGTAGAGAATCTCGGTTAGGTGTTTGATGGCATCGGAGTGCGTGTGTG
CATAGCGAGCTCCGCGGAGAGAGCGCACTATCGAATGAGCTTGGCTTGTC
AAGCTCCCTGTCATAAAGACATCCTTTTCATGCGACCGAATGATATCTGG
GGAGGTAGCGAAAGGGTAGAAATGAGCCGAGGGAGAGACGGACGGTGTCG
GAGCGGAGGTGGTCAAGGAGAGATCGTCGTCGGCCATTGTGAGGAAAGTG
TTGAATGGTGAGAGGTGACGGGTGAGAGAATCAACTGGTAGTCAATATGG
ATGAGAGCTATTCCCTCGTTGGGACAGCTATCATGGCCGGACAAGATGGA
GAGAAAGAGAGAGAGAGAGATAAGGCGCGTGGGATT back to topCoding sequence (CDS) from alignment at ch2:903280..906665+ >KJC3_001861-T1 ID=KJC3_001861-T1|Name=KJC3_001861-T1|organism=Aspergillus niger KJC3|type=CDS|length=4131bp|location=Sequence derived from alignment at ch2:903280..906665+ (Aspergillus niger KJC3)
ATGGCTCTCCGCGAAGCAGCTATGTCTTGCTCATTCAATGGGTATTTGTG
CCTACCTTCTCTGCATAGCCGGGCTACCATGACAGCCACTCGCTCAAGGT
CGCTGCGCAGGCCGTGCGCCTTGGTTAAGCAAATGACGTTGAATAGCTTA
ACGAGCAGGTTCTCTTCTACTTTGAATAGAAATTGCTGCTTTTCACGTTC
CAGTTCGGGCAAAACTGGGAGCTGTGTTATACAGAGCCTGCCTAGAACAC
GGCATCTCTCATCCAGGATTGACATTTGGTCCTGCGAGCTTACACCCCGG
CCTTCACAGGCCAGCGACTCGATACATTGCTACCAGACCTCTCCATATAC
TGGTCGCCAGATTGCCACTTCTCATAGTCGCAACCTTTCACATTATCTAG
CTTCAGAACAAAAAAGATGTTATAGCTCGAGTACAGTTCCGCGACCGATG
ATTGAGCATATAATCGACAGTAAAGATGTCGGAGAAATCCAGACCCCAGA
AACTCCAGTATTACTAGCCAAATCACACACCCTGGCTTCAAGCAACAATG
ACATAGACGAGCTTGCCCCGGAAAGCCACCCTCCAACAGAAGAGACAAAA
CCAGTCCTCTCACCAGCCGAGGACTCCCCAACACCCAAGTTCTGGAGCCA
CACCATGCTCAAAAGCCCTGAAGGCAAAAACATTATCGTGCATTACTGCA
AGACACTCAAAAGCAGCGAAGAAGTTGCGCAACTCTTCCTAAATGACAAA
ATTCTCGGCTTCGACATGGAATGGAAAGCCCAGGCCTCCGCCTGGAACAG
CATCCAAGACAACGTATCTCTAATCCAAATCGCAAACAGAGAGCGAATCG
CTCTCTTCCACGTTGCCCTTTTCAGACCAGGCAGAAAGATCAGCGACCTC
GTCCCTCCATCGTTGAAACAAATCATCGAATCCCCAGACATCACAAAGCT
CGGTGTATCAATCAAAGCAGACTGCACGCGTCTCCGCAAGTACCTCAAGG
TCGATGCGCACGGGATCTTCGAGCTCAGCCACCTCCATAAGCTGGTAAAA
TACTGCCAGACTAACCCGAAACTCATCAACAAGCGCCCTGTCAACCTGAG
TGAGCAGGTGGAGGAACATCTGGGGCTCCCGTTGGAGAAGGCGGAAGATG
TGAGGTGCAGTGATTGGACGGTATCTTTGAGTTATCGTCAGGTCCAATAT
GCTGCATCCGATTCTTACGCTTGTATCTGCTTGTTTGATACTATGGATGC
GAAACGAAAGGCTCTCGACCCTCGACCTCCTTTGCCTGCTCATGCGGATT
TGGATCTGCCGATTCGTATTGTGCGAGAGCCGACCGTGACGACGGTCCCG
GATGATGTCGAGGTGGTCAAGCCTTAGATGGCTCTCCGCGAAGCAGCTAT
GTCTTGCTCATTCAATGGGTATTTGTGCCTACCTTCTCTGCATAGCCGGG
CTACCATGACAGCCACTCGCTCAAGGTCGCTGCGCAGGCCGTGCGCCTTG
GTTAAGCAAATGACGTTGAATAGCTTAACGAGCAGGTTCTCTTCTACTTT
GAATAGAAATTGCTGCTTTTCACGTTCCAGTTCGGGCAAAACTGGGAGCT
GTGTTATACAGAGCCTGCCTAGAACACGGCATCTCTCATCCAGGATTGAC
ATTTGGTCCTGCGAGCTTACACCCCGGCCTTCACAGGCCAGCGACTCGAT
ACATTGCTACCAGACCTCTCCATATACTGGTCGCCAGATTGCCACTTCTC
ATAGTCGCAACCTTTCACATTATCTAGCTTCAGAACAAAAAAGATGTTAT
AGCTCGAGTACAGTTCCGCGACCGATGATTGAGCATATAATCGACAGTAA
AGATGTCGGAGAAATCCAGACCCCAGAAACTCCAGTATTACTAGCCAAAT
CACACACCCTGGCTTCAAGCAACAATGACATAGACGAGCTTGCCCCGGAA
AGCCACCCTCCAACAGAAGAGACAAAACCAGTCCTCTCACCAGCCGAGGA
CTCCCCAACACCCAAGTTCTGGAGCCACACCATGCTCAAAAGCCCTGAAG
GCAAAAACATTATCGTGCATTACTGCAAGACACTCAAAAGCAGCGAAGAA
GTTGCGCAACTCTTCCTAAATGACAAAATTCTCGGCTTCGACATGGAATG
GAAAGCCCAGGCCTCCGCCTGGAACAGCATCCAAGACAACGTATCTCTAA
TCCAAATCGCAAACAGAGAGCGAATCGCTCTCTTCCACGTTGCCCTTTTC
AGACCAGGCAGAAAGATCAGCGACCTCGTCCCTCCATCGTTGAAACAAAT
CATCGAATCCCCAGACATCACAAAGCTCGGTGTATCAATCAAAGCAGACT
GCACGCGTCTCCGCAAGTACCTCAAGGTCGATGCGCACGGGATCTTCGAG
CTCAGCCACCTCCATAAGCTGGTAAAATACTGCCAGACTAACCCGAAACT
CATCAACAAGCGCCCTGTCAACCTGAGTGAGCAGGTGGAGGAACATCTGG
GGCTCCCGTTGGAGAAGGCGGAAGATGTGAGGTGCAGTGATTGGACGGTA
TCTTTGAGTTATCGTCAGGTCCAATATGCTGCATCCGATTCTTACGCTTG
TATCTGCTTGTTTGATACTATGGATGCGAAACGAAAGGCTCTCGACCCTC
GACCTCCTTTGCCTGCTCATGCGGATTTGGATCTGCCGATTCGTATTGTG
CGAGAGCCGACCGTGACGACGGTCCCGGATGATGTCGAGGTGGTCAAGCC
TTAGATGGCTCTCCGCGAAGCAGCTATGTCTTGCTCATTCAATGGGTATT
TGTGCCTACCTTCTCTGCATAGCCGGGCTACCATGACAGCCACTCGCTCA
AGGTCGCTGCGCAGGCCGTGCGCCTTGGTTAAGCAAATGACGTTGAATAG
CTTAACGAGCAGGTTCTCTTCTACTTTGAATAGAAATTGCTGCTTTTCAC
GTTCCAGTTCGGGCAAAACTGGGAGCTGTGTTATACAGAGCCTGCCTAGA
ACACGGCATCTCTCATCCAGGATTGACATTTGGTCCTGCGAGCTTACACC
CCGGCCTTCACAGGCCAGCGACTCGATACATTGCTACCAGACCTCTCCAT
ATACTGGTCGCCAGATTGCCACTTCTCATAGTCGCAACCTTTCACATTAT
CTAGCTTCAGAACAAAAAAGATGTTATAGCTCGAGTACAGTTCCGCGACC
GATGATTGAGCATATAATCGACAGTAAAGATGTCGGAGAAATCCAGACCC
CAGAAACTCCAGTATTACTAGCCAAATCACACACCCTGGCTTCAAGCAAC
AATGACATAGACGAGCTTGCCCCGGAAAGCCACCCTCCAACAGAAGAGAC
AAAACCAGTCCTCTCACCAGCCGAGGACTCCCCAACACCCAAGTTCTGGA
GCCACACCATGCTCAAAAGCCCTGAAGGCAAAAACATTATCGTGCATTAC
TGCAAGACACTCAAAAGCAGCGAAGAAGTTGCGCAACTCTTCCTAAATGA
CAAAATTCTCGGCTTCGACATGGAATGGAAAGCCCAGGCCTCCGCCTGGA
ACAGCATCCAAGACAACGTATCTCTAATCCAAATCGCAAACAGAGAGCGA
ATCGCTCTCTTCCACGTTGCCCTTTTCAGACCAGGCAGAAAGATCAGCGA
CCTCGTCCCTCCATCGTTGAAACAAATCATCGAATCCCCAGACATCACAA
AGCTCGGTGTATCAATCAAAGCAGACTGCACGCGTCTCCGCAAGTACCTC
AAGGTCGATGCGCACGGGATCTTCGAGCTCAGCCACCTCCATAAGCTGGT
AAAATACTGCCAGACTAACCCGAAACTCATCAACAAGCGCCCTGTCAACC
TGAGTGAGCAGGTGGAGGAACATCTGGGGCTCCCGTTGGAGAAGGCGGAA
GATGTGAGGTGCAGTGATTGGACGGTATCTTTGAGTTATCGTCAGGTCCA
ATATGCTGCATCCGATTCTTACGCTTGTATCTGCTTGTTTGATACTATGG
ATGCGAAACGAAAGGCTCTCGACCCTCGACCTCCTTTGCCTGCTCATGCG
GATTTGGATCTGCCGATTCGTATTGTGCGAGAGCCGACCGTGACGACGGT
CCCGGATGATGTCGAGGTGGTCAAGCCTTAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006139 | nucleobase-containing compound metabolic process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008408 | 3'-5' exonuclease activity |
| GO:0003676 | nucleic acid binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_001861-T1.utr5p1 | KJC3_001861-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_001861-T1.utr3p1 | KJC3_001861-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR012337 |
| DBxref | InterPro:IPR036397 |
| DBxref | InterPro:IPR002562 |
| DBxref | PFAM:PF01612 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch2 | supercontig | ch2:903280..906665 + |
|
